Cow genome map

Conread name: Ss1.1-rpty638b_l2.5

Conread position: 5-766
Cow position: chr22:12432081-12431321 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 13

Conread position: 11-520
Cow position: chr22:12499458-12499967 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 128

Conread position: 11-767
Cow position: chr22:12385668-12384910 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 46

Conread position: 12-693
Cow position: chr22:12475968-12475287 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 131

Conread position: 12-693
Cow position: chr22:12499291-12499972 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 129

Conread position: 13-376
Cow position: chr22:12385244-12384882 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 232
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 346, 0

Conread position: 13-767
Cow position: chr22:14429648-14430402 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 446
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 387, 371

Conread position: 13-767
Cow position: chr22:46654015-46654769 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 43

Conread position: 15-335
Cow position: chr22:12418771-12418451 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 210
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 37, 42

Conread position: 15-353
Cow position: chr22:12399084-12398746 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 222
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 15-424
Cow position: chr22:12418855-12418446 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 251
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 15-434
Cow position: chr22:12385326-12384907 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 273
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 37, 42

Conread position: 15-605
Cow position: chr22:12458351-12457762 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 7

Conread position: 15-608
Cow position: chr22:11640862-11641455 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 363
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 146, 133

Conread position: 15-609
Cow position: chr22:12499378-12499972 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 41

Conread position: 15-641
Cow position: chr22:12544669-12545296 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 376
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 57, 61

Conread position: 15-668
Cow position: chr22:12431232-12430578 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 304

Conread position: 15-705
Cow position: chr22:14430238-14430928 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 403
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 80, 45

Conread position: 15-724
Cow position: chr22:14430154-14430863 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 421
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 61, 44

Conread position: 15-725
Cow position: chr22:14468063-14468763 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 432
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 210, 230

Conread position: 15-729
Cow position: chr22:12431316-12430602 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-733
Cow position: chr22:14467980-14468696 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 433
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 37, 7

Conread position: 15-753
Cow position: chr22:46653933-46654673 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 45

Conread position: 15-755
Cow position: chr22:12458520-12457780 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 43

Conread position: 15-763
Cow position: chr22:12431904-12431156 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 41

Conread position: 15-765
Cow position: chr22:12399504-12398754 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 386

Conread position: 15-766
Cow position: chr22:12399588-12398837 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 42

Conread position: 15-766
Cow position: chr22:12399672-12398921 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 136

Conread position: 15-766
Cow position: chr22:12419292-12418524 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 125

Conread position: 15-766
Cow position: chr22:12431988-12431237 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 198

Conread position: 15-766
Cow position: chr22:12432240-12431489 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 136

Conread position: 15-766
Cow position: chr22:12432408-12431657 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 125

Conread position: 15-766
Cow position: chr22:12476217-12475466 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 43

Conread position: 15-766
Cow position: chr22:12476301-12475550 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 111

Conread position: 15-766
Cow position: chr22:12498958-12499709 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 111

Conread position: 15-767
Cow position: chr22:12431484-12430732 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 536, 553

Conread position: 15-767
Cow position: chr22:12431652-12430900 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 152

Conread position: 15-767
Cow position: chr22:12431736-12430984 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 358

Conread position: 15-767
Cow position: chr22:12432324-12431572 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 150

Conread position: 15-767
Cow position: chr22:12476049-12475297 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 380

Conread position: 15-767
Cow position: chr22:12476133-12475381 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-767
Cow position: chr22:12499126-12499878 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-767
Cow position: chr22:12499210-12499962 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 42

Conread position: 16-766
Cow position: chr22:12431568-12430817 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 635

Conread position: 17-417
Cow position: chr22:11701275-11701675 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 253
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 41

Conread position: 17-723
Cow position: chr22:12432154-12431448 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 291

Conread position: 22-355
Cow position: chr22:46654528-46654863 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 221
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 36

Conread position: 22-602
Cow position: chr22:12419016-12418434 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 124

Conread position: 22-729
Cow position: chr22:12458597-12457890 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 40

Conread position: 26-504
Cow position: chr22:11666462-11666940 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 300
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 86, 79

Conread position: 26-604
Cow position: chr22:11701116-11701694 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 349
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 86, 73

Conread position: 26-763
Cow position: chr22:11640705-11641442 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 470, 461

Conread position: 27-520
Cow position: chr22:11701201-11701694 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 308
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 25, 42

Conread position: 27-711
Cow position: chr22:12544597-12545281 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 425
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 25, 31

Conread position: 32-766
Cow position: chr22:11640627-11641361 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 548, 514

Conread position: 32-766
Cow position: chr22:12476368-12475634 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 619, 632

Conread position: 32-766
Cow position: chr22:12498891-12499625 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 345

Conread position: 33-521
Cow position: chr22:11640964-11641452 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 366

Conread position: 33-763
Cow position: chr22:12431382-12430652 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 199

Conread position: 33-767
Cow position: chr22:12399822-12399088 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 25

Conread position: 34-766
Cow position: chr22:12431801-12431069 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 117

Conread position: 35-723
Cow position: chr22:14429754-14430442 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 85

Conread position: 36-723
Cow position: chr22:46654122-46654809 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 30

Conread position: 55-767
Cow position: chr22:12385708-12384994 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 38

Conread position: 60-754
Cow position: chr22:12432447-12431753 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 75

Conread position: 72-767
Cow position: chr22:12476412-12475717 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 425, 408

Conread position: 75-721
Cow position: chr22:14441940-14442585 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 380
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 78, 95

Conread position: 75-724
Cow position: chr22:14467955-14468604 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 381
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 326, 309

Conread position: 75-767
Cow position: chr22:12399696-12399004 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 673, 668

Conread position: 75-767
Cow position: chr22:12498850-12499542 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 316

Conread position: 76-767
Cow position: chr22:12458627-12457936 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 64

Conread position: 92-768
Cow position: chr22:12432499-12431823 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 164

Conread position: 106-686
Cow position: chr22:12419016-12418434 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 572, 0

Conread position: 110-688
Cow position: chr22:11701116-11701694 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 144-766
Cow position: chr22:12476424-12475802 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 250

Conread position: 144-766
Cow position: chr22:12498835-12499457 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 249

Conread position: 151-724
Cow position: chr22:14467948-14468520 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 345
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 16, 8

Conread position: 170-766
Cow position: chr22:11640597-11641193 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 249

Conread position: 177-739
Cow position: chr22:14441958-14442520 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 330
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 232, 211

Conread position: 194-765
Cow position: chr22:11701116-11701687 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 19

Conread position: 200-767
Cow position: chr22:12399901-12399340 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 41

Conread position: 243-766
Cow position: chr22:14441940-14442463 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 303
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 157, 142

Conread position: 244-765
Cow position: chr22:12419315-12418777 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 154

Conread position: 246-725
Cow position: chr22:14429548-14430024 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 297
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 88, 65

Conread position: 254-767
Cow position: chr22:46654004-46654517 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 54

Conread position: 257-724
Cow position: chr22:14429640-14430107 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 277
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 398, 388

Conread position: 266-767
Cow position: chr22:11701104-11701605 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 325
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 98, 91

Conread position: 279-767
Cow position: chr22:11640622-11641110 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 304
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 469, 465

Conread position: 302-767
Cow position: chr22:12385713-12385246 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 42

Conread position: 394-645
Cow position: chr22:12419334-12419082 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 401-767
Cow position: chr22:11666501-11666867 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 238
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 92, 80

Conread position: 445-766
Cow position: chr22:11666461-11666782 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 207
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 112, 119

Conread position: 577-767
Cow position: chr22:12458630-12458440 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 580-767
Cow position: chr22:12419315-12419128 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 122, 126

Show alignments to all cow chromosomes.