Cow genome map

Conread name: Ss1.1-rpty638b_l2.5

Conread position: 2-203
Cow position: chr23:24626551-24626750 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 137
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 69, 74

Conread position: 7-689
Cow position: chr23:24547333-24546653 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 8

Conread position: 12-386
Cow position: chr23:24535792-24535417 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 232
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 46

Conread position: 13-689
Cow position: chr23:25626368-25627041 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 44

Conread position: 15-307
Cow position: chr23:24522480-24522187 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 192
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 290, 0

Conread position: 15-349
Cow position: chr23:24654121-24654455 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 210
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 136, 124

Conread position: 15-386
Cow position: chr23:24522564-24522193 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 243
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 136, 129

Conread position: 15-438
Cow position: chr23:25660323-25660746 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 267
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 37, 50

Conread position: 15-470
Cow position: chr23:25660239-25660694 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 147

Conread position: 15-560
Cow position: chr23:24535957-24535411 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 339
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 78, 92

Conread position: 15-592
Cow position: chr23:25698652-25698075 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 36

Conread position: 15-611
Cow position: chr23:25724039-25723445 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 366
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 52, 41

Conread position: 15-693
Cow position: chr23:24639388-24640066 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 116

Conread position: 15-754
Cow position: chr23:24560802-24560063 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 639, 631

Conread position: 15-767
Cow position: chr23:25626034-25626783 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 46

Conread position: 17-341
Cow position: chr23:24521972-24521653 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 209
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 40

Conread position: 17-352
Cow position: chr23:24626398-24626733 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 217
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 21-767
Cow position: chr23:24560880-24560134 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 36

Conread position: 26-761
Cow position: chr23:25698794-25698074 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 449
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 78, 53

Conread position: 26-766
Cow position: chr23:25626129-25626866 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 40

Conread position: 27-448
Cow position: chr23:24639652-24640073 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 272
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 25, 29

Conread position: 27-606
Cow position: chr23:25660167-25660746 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 29

Conread position: 27-689
Cow position: chr23:25724111-25723453 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 397
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 133, 127

Conread position: 27-753
Cow position: chr23:25626298-25627021 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 138

Conread position: 27-760
Cow position: chr23:25626214-25626944 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 49

Conread position: 27-765
Cow position: chr23:24639316-24640054 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 73

Conread position: 32-767
Cow position: chr23:24639237-24639972 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 26

Conread position: 33-523
Cow position: chr23:25626556-25627043 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 33-605
Cow position: chr23:24560700-24560128 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 25

Conread position: 33-644
Cow position: chr23:24536023-24535411 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 151

Conread position: 35-539
Cow position: chr23:24626251-24626750 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 10

Conread position: 37-639
Cow position: chr23:24522791-24522192 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 25

Conread position: 75-766
Cow position: chr23:24560910-24560219 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 65

Conread position: 85-727
Cow position: chr23:24522825-24522188 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 12

Conread position: 89-690
Cow position: chr23:25660145-25660746 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 50

Conread position: 89-728
Cow position: chr23:24536051-24535411 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 221

Conread position: 89-767
Cow position: chr23:24639212-24639888 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 25

Conread position: 91-722
Cow position: chr23:24547334-24546703 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 49

Conread position: 111-508
Cow position: chr23:25724111-25723714 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 261
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 41, 15

Conread position: 119-623
Cow position: chr23:24626251-24626750 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 10

Conread position: 120-464
Cow position: chr23:24654058-24654402 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 223
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 32, 20

Conread position: 155-767
Cow position: chr23:25626006-25626615 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 405

Conread position: 176-767
Cow position: chr23:24547333-24546742 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 386

Conread position: 177-765
Cow position: chr23:25660149-25660737 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 48

Conread position: 179-767
Cow position: chr23:24560890-24560302 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 46

Conread position: 181-672
Cow position: chr23:24654034-24654520 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 310
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 5, 203

Conread position: 195-592
Cow position: chr23:25724111-25723714 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 258
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 118, 113

Conread position: 201-754
Cow position: chr23:24536023-24535470 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 361

Conread position: 205-766
Cow position: chr23:24522791-24522233 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 108

Conread position: 243-762
Cow position: chr23:25698676-25698157 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 320
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 65, 60

Conread position: 247-667
Cow position: chr23:25724143-25723723 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 267
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 61, 50

Conread position: 257-707
Cow position: chr23:24626302-24626750 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 130

Conread position: 259-767
Cow position: chr23:24547334-24546826 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 50

Conread position: 279-766
Cow position: chr23:24536029-24535542 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 282

Conread position: 283-767
Cow position: chr23:25660171-25660655 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 191

Conread position: 285-762
Cow position: chr23:25698787-25698325 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 302
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 66, 46

Conread position: 304-762
Cow position: chr23:24626265-24626723 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 32

Conread position: 327-767
Cow position: chr23:25698676-25698236 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 269
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 84, 60

Conread position: 337-767
Cow position: chr23:24522825-24522400 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 265
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 53, 33

Conread position: 341-766
Cow position: chr23:25660145-25660570 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 278
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 41, 53

Conread position: 341-767
Cow position: chr23:24536051-24535625 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 304

Conread position: 353-636
Cow position: chr23:24521972-24521689 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 182
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 201, 210

Conread position: 385-767
Cow position: chr23:24626261-24626644 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 254
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 5, 33

Conread position: 394-761
Cow position: chr23:25724081-25723713 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 240
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 10, 81

Conread position: 412-763
Cow position: chr23:24639197-24639548 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 225
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 29

Conread position: 415-766
Cow position: chr23:25724143-25723792 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 231
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 62, 47

Conread position: 426-767
Cow position: chr23:25660146-25660487 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 237
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 40, 52

Conread position: 441-768
Cow position: chr23:24654043-24654370 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 210
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 128, 120

Conread position: 476-767
Cow position: chr23:25625991-25626282 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 188
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 259, 270

Conread position: 511-762
Cow position: chr23:24521982-24521730 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 211, 0

Conread position: 537-768
Cow position: chr23:24536023-24535792 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 26

Show alignments to all cow chromosomes.