Cow genome map
| Conread name: | Ss1.1-rpty638b_l2.5 |
| Conread position: | 1-281 |
| Cow position: | chr28:7810664-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 1-764 |
| Cow position: | chr28:11334232-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 1-766 |
| Cow position: | chr28:7757405-7758170 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 7-458 |
| Cow position: | chr28:7758404-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 15 |
| Conread position: | 10-731 |
| Cow position: | chr28:9289916-9290633 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 35 |
| Conread position: | 13-766 |
| Cow position: | chr28:7757921-7758658 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 129 |
| Conread position: | 15-505 |
| Cow position: | chr28:9299225-9299711 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 122, 7 |
| Conread position: | 15-616 |
| Cow position: | chr28:7810352-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 15-722 |
| Cow position: | chr28:11334050-11333349 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 15-727 |
| Cow position: | chr28:9252938-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 638, 631 |
| Conread position: | 15-754 |
| Cow position: | chr28:7758175-7758898 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 15-762 |
| Cow position: | chr28:7757587-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 56 |
| Conread position: | 15-767 |
| Cow position: | chr28:7758007-7758743 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 187 |
| Conread position: | 15-768 |
| Cow position: | chr28:11334134-11333388 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 293 |
| Conread position: | 18-766 |
| Cow position: | chr28:9252775-9253521 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 119 |
| Conread position: | 18-767 |
| Cow position: | chr28:9298823-9299556 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 22-588 |
| Cow position: | chr28:34673365-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 339 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 108, 129 |
| Conread position: | 22-691 |
| Cow position: | chr28:9299077-9299727 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 108 |
| Conread position: | 26-550 |
| Cow position: | chr28:11333703-11333179 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 315 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 119 |
| Conread position: | 26-762 |
| Cow position: | chr28:34695842-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 144 |
| Conread position: | 26-766 |
| Cow position: | chr28:7757514-7758254 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 628, 619 |
| Conread position: | 27-767 |
| Cow position: | chr28:9298666-9299388 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 10 |
| Conread position: | 32-510 |
| Cow position: | chr28:34679540-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 116, 103 |
| Conread position: | 32-700 |
| Cow position: | chr28:7810284-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 253 |
| Conread position: | 32-766 |
| Cow position: | chr28:7757274-7758002 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 32-767 |
| Cow position: | chr28:7757190-7757919 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 145 |
| Conread position: | 32-767 |
| Cow position: | chr28:7757352-7758087 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 621, 613 |
| Conread position: | 33-350 |
| Cow position: | chr28:33210333-33210653 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 109 |
| Conread position: | 34-768 |
| Cow position: | chr28:9299006-9299720 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 35-632 |
| Cow position: | chr28:9298590-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 77 |
| Conread position: | 56-644 |
| Cow position: | chr28:9290132-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 76 |
| Conread position: | 57-763 |
| Cow position: | chr28:9252895-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 108 |
| Conread position: | 67-766 |
| Cow position: | chr28:34695716-34696414 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 6 |
| Conread position: | 70-767 |
| Cow position: | chr28:9252743-9253438 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 151 |
| Conread position: | 74-562 |
| Cow position: | chr28:34679580-34679102 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 75-642 |
| Cow position: | chr28:11333906-11333345 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 350 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 307, 322 |
| Conread position: | 75-766 |
| Cow position: | chr28:7810252-7810925 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 85-716 |
| Cow position: | chr28:9298556-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 86-767 |
| Cow position: | chr28:9289746-9290418 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 88-767 |
| Cow position: | chr28:9289910-9290585 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 41 |
| Conread position: | 95-683 |
| Cow position: | chr28:7758323-7758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 512, 457 |
| Conread position: | 96-489 |
| Cow position: | chr28:33210228-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 106-672 |
| Cow position: | chr28:34673365-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 350 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 103, 129 |
| Conread position: | 159-767 |
| Cow position: | chr28:34695891-34696499 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 177-767 |
| Cow position: | chr28:9298564-9299150 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 180-561 |
| Cow position: | chr28:33210228-33210610 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 189-729 |
| Cow position: | chr28:34673364-34673904 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 328 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 193, 211 |
| Conread position: | 243-766 |
| Cow position: | chr28:11334242-11333719 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 244-767 |
| Cow position: | chr28:9252584-9253102 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 258-766 |
| Cow position: | chr28:9298561-9299065 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 106 |
| Conread position: | 262-722 |
| Cow position: | chr28:34673353-34673813 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 114, 136 |
| Conread position: | 348-729 |
| Cow position: | chr28:33210228-33210610 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 37 |
| Conread position: | 407-700 |
| Cow position: | chr28:7810248-7810532 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 247, 43 |
| Conread position: | 408-724 |
| Cow position: | chr28:34679500-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 66 |
| Conread position: | 410-766 |
| Cow position: | chr28:34673417-34673773 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 432-766 |
| Cow position: | chr28:33210228-33210562 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 92, 105 |
| Conread position: | 516-767 |
| Cow position: | chr28:33210228-33210479 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 198, 205 |
| Conread position: | 525-767 |
| Cow position: | chr28:34673364-34673606 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 212, 204 |
Show alignments to all cow chromosomes.