Cow genome map
| Conread name: | Ss1.1-rpty638b_l2.5 |
| Conread position: | 2-430 |
| Cow position: | chr7:11600861-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 425, 0 |
| Conread position: | 2-655 |
| Cow position: | chr7:18390151-18390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 11-723 |
| Cow position: | chr7:11601189-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 549 |
| Conread position: | 11-724 |
| Cow position: | chr7:8324817-8325529 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 11-767 |
| Cow position: | chr7:42879193-42878437 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 545 |
| Conread position: | 15-359 |
| Cow position: | chr7:42878601-42878257 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 15-594 |
| Cow position: | chr7:11601016-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 459 |
| Conread position: | 15-594 |
| Cow position: | chr7:42878853-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 211 |
| Conread position: | 15-651 |
| Cow position: | chr7:1439639-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 126 |
| Conread position: | 15-723 |
| Cow position: | chr7:8243222-8243929 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 426 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 15-724 |
| Cow position: | chr7:8243054-8243762 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 427 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 128, 138 |
| Conread position: | 15-727 |
| Cow position: | chr7:1014774-1015488 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 41 |
| Conread position: | 15-730 |
| Cow position: | chr7:1439557-1440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 31 |
| Conread position: | 15-760 |
| Cow position: | chr7:42879021-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 628, 618 |
| Conread position: | 15-765 |
| Cow position: | chr7:8277683-8278433 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 37 |
| Conread position: | 15-766 |
| Cow position: | chr7:3180120-3180870 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 46 |
| Conread position: | 15-766 |
| Cow position: | chr7:42879105-42878354 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 46 |
| Conread position: | 15-767 |
| Cow position: | chr7:1014276-1015022 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 121 |
| Conread position: | 15-767 |
| Cow position: | chr7:3179868-3180620 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 120 |
| Conread position: | 15-767 |
| Cow position: | chr7:8277767-8278517 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 462 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 15-767 |
| Cow position: | chr7:8325324-8326076 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 15-767 |
| Cow position: | chr7:8325408-8326163 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 15-767 |
| Cow position: | chr7:42879272-42878521 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 8 |
| Conread position: | 16-724 |
| Cow position: | chr7:3179784-3180493 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 546 |
| Conread position: | 17-555 |
| Cow position: | chr7:11434811-11434280 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 34 |
| Conread position: | 17-723 |
| Cow position: | chr7:8325242-8325948 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 35 |
| Conread position: | 17-724 |
| Cow position: | chr7:8242804-8243510 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 430 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 17-724 |
| Cow position: | chr7:8277853-8278558 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 442 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 17-762 |
| Cow position: | chr7:18389999-18390744 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 148 |
| Conread position: | 18-767 |
| Cow position: | chr7:8277516-8278267 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 23-548 |
| Cow position: | chr7:1438178-1438702 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 114, 11 |
| Conread position: | 26-731 |
| Cow position: | chr7:1439484-1440188 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 104 |
| Conread position: | 27-767 |
| Cow position: | chr7:3180048-3180788 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 282 |
| Conread position: | 33-576 |
| Cow position: | chr7:18390267-18390810 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 42 |
| Conread position: | 33-716 |
| Cow position: | chr7:1438023-1438701 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 412 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 160, 24 |
| Conread position: | 33-727 |
| Cow position: | chr7:8277365-8278059 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 34-385 |
| Cow position: | chr7:1438355-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 36-767 |
| Cow position: | chr7:3179721-3180452 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 95 |
| Conread position: | 42-469 |
| Cow position: | chr7:1438279-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 73-767 |
| Cow position: | chr7:18389971-18390665 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 78 |
| Conread position: | 75-724 |
| Cow position: | chr7:8324964-8325613 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 58 |
| Conread position: | 75-765 |
| Cow position: | chr7:1014750-1015440 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 75-767 |
| Cow position: | chr7:8277659-8278351 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 76-767 |
| Cow position: | chr7:42879296-42878605 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 77-767 |
| Cow position: | chr7:1014668-1015358 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 503, 480 |
| Conread position: | 79-514 |
| Cow position: | chr7:11600868-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 0 |
| Conread position: | 79-717 |
| Cow position: | chr7:11601204-11600566 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 83 |
| Conread position: | 81-729 |
| Cow position: | chr7:18390147-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-767 |
| Cow position: | chr7:1014267-1014938 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 488, 367 |
| Conread position: | 93-722 |
| Cow position: | chr7:8243383-8244010 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 395 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 111-767 |
| Cow position: | chr7:3179712-3180368 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 153-766 |
| Cow position: | chr7:1439443-1440056 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 145 |
| Conread position: | 157-766 |
| Cow position: | chr7:11601210-11600601 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 363 |
| Conread position: | 172-724 |
| Cow position: | chr7:8277253-8277804 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 334 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 132, 5 |
| Conread position: | 178-767 |
| Cow position: | chr7:11601272-11600684 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 570, 37 |
| Conread position: | 189-766 |
| Cow position: | chr7:1438092-1438667 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 352 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 138, 94 |
| Conread position: | 200-767 |
| Cow position: | chr7:42879424-42878857 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 204-724 |
| Cow position: | chr7:28846447-28846967 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 210-766 |
| Cow position: | chr7:42879331-42878774 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 439 |
| Conread position: | 235-767 |
| Cow position: | chr7:1014244-1014770 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 329 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 168, 158 |
| Conread position: | 240-754 |
| Cow position: | chr7:1437980-1438487 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 413, 32 |
| Conread position: | 253-760 |
| Cow position: | chr7:1014096-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 105, 29 |
| Conread position: | 272-721 |
| Cow position: | chr7:1438091-1438538 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 272 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 134, 110 |
| Conread position: | 435-724 |
| Cow position: | chr7:8324736-8325025 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 145, 123 |
| Conread position: | 441-767 |
| Cow position: | chr7:1438092-1438416 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 52 |
Show alignments to all cow chromosomes.