Cow genome map


           Conread name:
           Ss1.1-rpty638b_l2.5
        

               Conread position:
               2-430
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               266
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               425, 0
               

               Conread position:
               2-655
               

               Cow position:
               
               

               Alignm length:
               659
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 34
               

               Conread position:
               11-723
               

               Cow position:
               
               

               Alignm length:
               716
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 549
               

               Conread position:
               11-724
               

               Cow position:
               
               

               Alignm length:
               730
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 11
               

               Conread position:
               11-767
               

               Cow position:
               
               

               Alignm length:
               758
               

               Alignm identity:
               541
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               558, 545
               

               Conread position:
               15-359
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 42
               

               Conread position:
               15-594
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               475, 459
               

               Conread position:
               15-594
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 211
               

               Conread position:
               15-651
               

               Cow position:
               
               

               Alignm length:
               645
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 126
               

               Conread position:
               15-723
               

               Cow position:
               
               

               Alignm length:
               723
               

               Alignm identity:
               426
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               54, 61
               

               Conread position:
               15-724
               

               Cow position:
               
               

               Alignm length:
               719
               

               Alignm identity:
               427
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               128, 138
               

               Conread position:
               15-727
               

               Cow position:
               
               

               Alignm length:
               722
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 41
               

               Conread position:
               15-730
               

               Cow position:
               
               

               Alignm length:
               724
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 31
               

               Conread position:
               15-760
               

               Cow position:
               
               

               Alignm length:
               748
               

               Alignm identity:
               528
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               628, 618
               

               Conread position:
               15-765
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 37
               

               Conread position:
               15-766
               

               Cow position:
               
               

               Alignm length:
               758
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 46
               

               Conread position:
               15-766
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               541
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 46
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               755
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 121
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               759
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 120
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               765
               

               Alignm identity:
               462
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               64, 54
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               767
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 37
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               766
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 37
               

               Conread position:
               15-767
               

               Cow position:
               
               

               Alignm length:
               757
               

               Alignm identity:
               548
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 8
               

               Conread position:
               16-724
               

               Cow position:
               
               

               Alignm length:
               712
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 546
               

               Conread position:
               17-555
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               338
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               56, 34
               

               Conread position:
               17-723
               

               Cow position:
               
               

               Alignm length:
               721
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 35
               

               Conread position:
               17-724
               

               Cow position:
               
               

               Alignm length:
               719
               

               Alignm identity:
               430
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               58, 34
               

               Conread position:
               17-724
               

               Cow position:
               
               

               Alignm length:
               722
               

               Alignm identity:
               442
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               37, 52
               

               Conread position:
               17-762
               

               Cow position:
               
               

               Alignm length:
               751
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 148
               

               Conread position:
               18-767
               

               Cow position:
               
               

               Alignm length:
               769
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 35
               

               Conread position:
               23-548
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               325
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               114, 11
               

               Conread position:
               26-731
               

               Cow position:
               
               

               Alignm length:
               714
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 104
               

               Conread position:
               27-767
               

               Cow position:
               
               

               Alignm length:
               746
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               297, 282
               

               Conread position:
               33-576
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 42
               

               Conread position:
               33-716
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               412
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               160, 24
               

               Conread position:
               33-727
               

               Cow position:
               
               

               Alignm length:
               702
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 26
               

               Conread position:
               34-385
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               19, 24
               

               Conread position:
               36-767
               

               Cow position:
               
               

               Alignm length:
               736
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 95
               

               Conread position:
               42-469
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               34, 29
               

               Conread position:
               73-767
               

               Cow position:
               
               

               Alignm length:
               700
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 78
               

               Conread position:
               75-724
               

               Cow position:
               
               

               Alignm length:
               659
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 58
               

               Conread position:
               75-765
               

               Cow position:
               
               

               Alignm length:
               695
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 71
               

               Conread position:
               75-767
               

               Cow position:
               
               

               Alignm length:
               704
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 78
               

               Conread position:
               76-767
               

               Cow position:
               
               

               Alignm length:
               696
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 25
               

               Conread position:
               77-767
               

               Cow position:
               
               

               Alignm length:
               694
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               503, 480
               

               Conread position:
               79-514
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               432, 0
               

               Conread position:
               79-717
               

               Cow position:
               
               

               Alignm length:
               644
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 83
               

               Conread position:
               81-729
               

               Cow position:
               
               

               Alignm length:
               649
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               90-767
               

               Cow position:
               
               

               Alignm length:
               680
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               488, 367
               

               Conread position:
               93-722
               

               Cow position:
               
               

               Alignm length:
               644
               

               Alignm identity:
               395
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               48, 60
               

               Conread position:
               111-767
               

               Cow position:
               
               

               Alignm length:
               660
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 25
               

               Conread position:
               153-766
               

               Cow position:
               
               

               Alignm length:
               621
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 145
               

               Conread position:
               157-766
               

               Cow position:
               
               

               Alignm length:
               616
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               369, 363
               

               Conread position:
               172-724
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               334
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               132, 5
               

               Conread position:
               178-767
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               570, 37
               

               Conread position:
               189-766
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               352
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               138, 94
               

               Conread position:
               200-767
               

               Cow position:
               
               

               Alignm length:
               572
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 28
               

               Conread position:
               204-724
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               210-766
               

               Cow position:
               
               

               Alignm length:
               559
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 439
               

               Conread position:
               235-767
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               329
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               168, 158
               

               Conread position:
               240-754
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               413, 32
               

               Conread position:
               253-760
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               323
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               105, 29
               

               Conread position:
               272-721
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               272
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               134, 110
               

               Conread position:
               435-724
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               145, 123
               

               Conread position:
               441-767
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               58, 52
               
Show alignments to all cow chromosomes.