Cow genome map
| Conread name: | Ss1.1-rpty638b_l2.5 |
| Conread position: | 1-448 |
| Cow position: | chrX:25310131-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 1-611 |
| Cow position: | chrX:29045271-29044661 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 2-767 |
| Cow position: | chrX:29045753-29045009 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 142 |
| Conread position: | 3-767 |
| Cow position: | chrX:25309715-25310477 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 19 |
| Conread position: | 4-712 |
| Cow position: | chrX:14181649-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 414 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 4-767 |
| Cow position: | chrX:25325848-25325084 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 222 |
| Conread position: | 15-452 |
| Cow position: | chrX:29045089-29044652 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-471 |
| Cow position: | chrX:13826693-13826237 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 15-535 |
| Cow position: | chrX:25310061-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 15-585 |
| Cow position: | chrX:25324744-25324178 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 383 |
| Conread position: | 15-637 |
| Cow position: | chrX:12627442-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 389 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 62, 36 |
| Conread position: | 15-690 |
| Cow position: | chrX:25324912-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 130 |
| Conread position: | 15-765 |
| Cow position: | chrX:25324996-25324246 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 447 |
| Conread position: | 15-767 |
| Cow position: | chrX:25325164-25324412 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 58 |
| Conread position: | 15-767 |
| Cow position: | chrX:25325248-25324496 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 229 |
| Conread position: | 15-767 |
| Cow position: | chrX:25325332-25324580 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 15-767 |
| Cow position: | chrX:25325416-25324664 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 640, 635 |
| Conread position: | 15-767 |
| Cow position: | chrX:25325500-25324748 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 204 |
| Conread position: | 15-767 |
| Cow position: | chrX:25325584-25324832 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 122 |
| Conread position: | 15-767 |
| Cow position: | chrX:25325668-25324916 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-767 |
| Cow position: | chrX:25325752-25325000 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 142 |
| Conread position: | 15-768 |
| Cow position: | chrX:25325080-25324327 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 389 |
| Conread position: | 17-619 |
| Cow position: | chrX:25309979-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 217 |
| Conread position: | 17-767 |
| Cow position: | chrX:25309811-25310561 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 23-690 |
| Cow position: | chrX:25309901-25310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 132 |
| Conread position: | 27-694 |
| Cow position: | chrX:29045329-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 262 |
| Conread position: | 32-463 |
| Cow position: | chrX:29045807-29045376 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 277 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 34-767 |
| Cow position: | chrX:25309660-25310393 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 73 |
| Conread position: | 36-727 |
| Cow position: | chrX:13826924-13826233 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 57-767 |
| Cow position: | chrX:29045377-29044673 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 73-763 |
| Cow position: | chrX:29045850-29045181 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 75-767 |
| Cow position: | chrX:12627334-12628024 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 403 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 79 |
| Conread position: | 86-721 |
| Cow position: | chrX:12627429-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 378 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 242, 68 |
| Conread position: | 92-768 |
| Cow position: | chrX:14181647-14180970 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 405 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 121 |
| Conread position: | 160-767 |
| Cow position: | chrX:25325859-25325252 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 249 |
| Conread position: | 264-723 |
| Cow position: | chrX:13826948-13826489 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 130, 118 |
| Conread position: | 281-766 |
| Cow position: | chrX:25309655-25310140 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 323-717 |
| Cow position: | chrX:29045852-29045458 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 421-767 |
| Cow position: | chrX:29045838-29045492 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 227 |
| Conread position: | 501-766 |
| Cow position: | chrX:29045842-29045577 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.