Cow genome map
| Conread name: | Ss1.1-rret01_o2.5 |
| Conread position: | 1-187 |
| Cow position: | chr17:22589970-22589784 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-237 |
| Cow position: | chr17:22552552-22552315 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 185, 180 |
| Conread position: | 1-238 |
| Cow position: | chr17:22590222-22589984 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-256 |
| Cow position: | chr17:22552300-22552043 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-262 |
| Cow position: | chr17:22552384-22552121 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-298 |
| Cow position: | chr17:22590306-22590007 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 1-305 |
| Cow position: | chr17:22551880-22551574 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 2-311 |
| Cow position: | chr17:22452080-22451769 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 212, 298 |
| Conread position: | 3-149 |
| Cow position: | chr17:22551626-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-199 |
| Cow position: | chr17:22452247-22452051 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-201 |
| Cow position: | chr17:22451995-22451797 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-213 |
| Cow position: | chr17:22551710-22551500 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-219 |
| Cow position: | chr17:22552886-22552670 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-237 |
| Cow position: | chr17:22452331-22452096 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 200, 211 |
| Conread position: | 3-238 |
| Cow position: | chr17:22473552-22473788 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 76, 104 |
| Conread position: | 3-238 |
| Cow position: | chr17:22590052-22589816 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 3-251 |
| Cow position: | chr17:22552634-22552383 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 3-255 |
| Cow position: | chr17:22553138-22552884 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 3-295 |
| Cow position: | chr17:22551962-22551668 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 218, 272 |
| Conread position: | 3-305 |
| Cow position: | chr17:22552130-22551826 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 211, 272 |
| Conread position: | 3-305 |
| Cow position: | chr17:22552802-22552498 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 202, 272 |
| Conread position: | 3-305 |
| Cow position: | chr17:22552970-22552666 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 5-242 |
| Cow position: | chr17:22452413-22452174 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 167, 148 |
| Conread position: | 6-209 |
| Cow position: | chr17:22452160-22451957 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-255 |
| Cow position: | chr17:22589713-22589462 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 6-305 |
| Cow position: | chr17:22589629-22589328 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 79, 75 |
| Conread position: | 9-212 |
| Cow position: | chr17:22589794-22589591 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-232 |
| Cow position: | chr17:22499171-22498947 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-238 |
| Cow position: | chr17:22590130-22589900 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-262 |
| Cow position: | chr17:22553048-22552793 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-295 |
| Cow position: | chr17:22552460-22552172 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-310 |
| Cow position: | chr17:22552208-22551905 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 13-305 |
| Cow position: | chr17:22589874-22589580 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 16-213 |
| Cow position: | chr17:22589367-22589172 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 16-301 |
| Cow position: | chr17:22499332-22499043 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 17-162 |
| Cow position: | chr17:22473818-22473964 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 17-209 |
| Cow position: | chr17:22498827-22498635 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-237 |
| Cow position: | chr17:22499247-22499026 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 17-305 |
| Cow position: | chr17:22473398-22473688 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 199, 218 |
| Conread position: | 18-199 |
| Cow position: | chr17:22473735-22473916 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-238 |
| Cow position: | chr17:22499394-22499193 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 59 |
Show alignments to all cow chromosomes.