Cow genome map
| Conread name: | Ss1.1-rret01_o2.5 |
| Conread position: | 1-232 |
| Cow position: | chr19:23613984-23614217 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-309 |
| Cow position: | chr19:23614321-23614631 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 213, 282 |
| Conread position: | 2-200 |
| Cow position: | chr19:23614574-23614772 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-213 |
| Cow position: | chr19:23614910-23615119 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 176, 172 |
| Conread position: | 2-242 |
| Cow position: | chr19:20678337-20678579 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 219, 0 |
| Conread position: | 3-159 |
| Cow position: | chr19:20677834-20677990 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-199 |
| Cow position: | chr19:14940039-14940235 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-199 |
| Cow position: | chr19:14940795-14940991 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-208 |
| Cow position: | chr19:14940207-14940412 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-212 |
| Cow position: | chr19:14959518-14959309 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 95 |
| Conread position: | 3-242 |
| Cow position: | chr19:14940375-14940616 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 3-298 |
| Cow position: | chr19:14948415-14948119 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 210, 15 |
| Conread position: | 4-192 |
| Cow position: | chr19:23649606-23649794 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-202 |
| Cow position: | chr19:14948247-14948049 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-212 |
| Cow position: | chr19:23649858-23650066 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-292 |
| Cow position: | chr19:23650111-23650400 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 6-212 |
| Cow position: | chr19:14948499-14948291 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 95 |
| Conread position: | 7-309 |
| Cow position: | chr19:14940547-14940851 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 9-195 |
| Cow position: | chr19:14959596-14959410 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-209 |
| Cow position: | chr19:14940465-14940665 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-209 |
| Cow position: | chr19:14960334-14960136 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 9-212 |
| Cow position: | chr19:23597254-23597457 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-215 |
| Cow position: | chr19:23649695-23649901 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 94, 89 |
| Conread position: | 9-238 |
| Cow position: | chr19:14940297-14940527 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-295 |
| Cow position: | chr19:23614161-23614449 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-305 |
| Cow position: | chr19:23613405-23613703 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 159, 142 |
| Conread position: | 9-305 |
| Cow position: | chr19:23614497-23614795 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 204, 259 |
| Conread position: | 9-308 |
| Cow position: | chr19:23649443-23649744 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-309 |
| Cow position: | chr19:23613573-23613875 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 205, 266 |
| Conread position: | 9-309 |
| Cow position: | chr19:23613825-23614127 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 10-305 |
| Cow position: | chr19:23614078-23614375 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 204, 265 |
| Conread position: | 12-232 |
| Cow position: | chr19:43570164-43569943 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 161, 155 |
| Conread position: | 14-212 |
| Cow position: | chr19:14960413-14960215 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-192 |
| Cow position: | chr19:43569907-43569732 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-200 |
| Cow position: | chr19:23597346-23597529 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 17-209 |
| Cow position: | chr19:23614757-23614949 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 62 |
| Conread position: | 17-212 |
| Cow position: | chr19:14959099-14958904 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-212 |
| Cow position: | chr19:43569991-43569796 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-232 |
| Cow position: | chr19:23613749-23613965 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 159, 142 |
| Conread position: | 17-242 |
| Cow position: | chr19:23614421-23614647 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 17-308 |
| Cow position: | chr19:14959670-14959379 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 19 |
| Conread position: | 18-161 |
| Cow position: | chr19:23597179-23597322 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-212 |
| Cow position: | chr19:14960075-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 154, 135 |
| Conread position: | 18-212 |
| Cow position: | chr19:23597431-23597625 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-309 |
| Cow position: | chr19:14940138-14940431 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 18-309 |
| Cow position: | chr19:23613666-23613959 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 196, 217 |
| Conread position: | 18-309 |
| Cow position: | chr19:43570242-43569949 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 181, 194 |
| Conread position: | 23-255 |
| Cow position: | chr19:14960154-14959920 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 80, 74 |
| Conread position: | 34-305 |
| Cow position: | chr19:14960477-14960204 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 138, 125 |
Show alignments to all cow chromosomes.