Cow genome map
| Conread name: | Ss1.1-rret01_o2.5 |
| Conread position: | 3-132 |
| Cow position: | chr22:12475416-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-200 |
| Cow position: | chr22:12476256-12476059 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 3-212 |
| Cow position: | chr22:12432447-12432238 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 110 |
| Conread position: | 3-212 |
| Cow position: | chr22:12499087-12499296 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 175, 166 |
| Conread position: | 3-232 |
| Cow position: | chr22:12475752-12475522 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 90, 84 |
| Conread position: | 3-232 |
| Cow position: | chr22:12499003-12499233 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 3-238 |
| Cow position: | chr22:12475584-12475348 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 3-242 |
| Cow position: | chr22:12385703-12385462 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 3-305 |
| Cow position: | chr22:12458391-12458087 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 211, 272 |
| Conread position: | 3-308 |
| Cow position: | chr22:11640823-11641130 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 3-308 |
| Cow position: | chr22:12399627-12399320 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 3-309 |
| Cow position: | chr22:12476172-12475864 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 175, 168 |
| Conread position: | 3-309 |
| Cow position: | chr22:12498919-12499227 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 4-194 |
| Cow position: | chr22:12431690-12431500 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-308 |
| Cow position: | chr22:12399540-12399236 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 82, 72 |
| Conread position: | 7-199 |
| Cow position: | chr22:12458135-12457943 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 73 |
| Conread position: | 8-238 |
| Cow position: | chr22:12385446-12385213 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 9-195 |
| Cow position: | chr22:12431013-12430827 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 85 |
| Conread position: | 9-195 |
| Cow position: | chr22:12458553-12458367 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-199 |
| Cow position: | chr22:12385191-12385001 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-199 |
| Cow position: | chr22:12399285-12399095 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 170, 150 |
| Conread position: | 9-199 |
| Cow position: | chr22:12431181-12430991 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-199 |
| Cow position: | chr22:12499765-12499955 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-200 |
| Cow position: | chr22:12418888-12418697 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-208 |
| Cow position: | chr22:12475830-12475631 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 169, 160 |
| Conread position: | 9-209 |
| Cow position: | chr22:12431265-12431065 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-209 |
| Cow position: | chr22:12475494-12475294 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-212 |
| Cow position: | chr22:12457965-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-219 |
| Cow position: | chr22:12475914-12475704 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 78 |
| Conread position: | 9-232 |
| Cow position: | chr22:12499177-12499401 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 105, 100 |
| Conread position: | 9-232 |
| Cow position: | chr22:12499681-12499905 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-237 |
| Cow position: | chr22:12458049-12457820 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-241 |
| Cow position: | chr22:12399033-12398801 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 204, 226 |
| Conread position: | 9-242 |
| Cow position: | chr22:12431853-12431619 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 9-293 |
| Cow position: | chr22:12458469-12458181 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 9-305 |
| Cow position: | chr22:12385359-12385061 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 204, 249 |
| Conread position: | 9-305 |
| Cow position: | chr22:12399201-12398903 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 204, 266 |
| Conread position: | 9-305 |
| Cow position: | chr22:12430929-12430631 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 205, 253 |
| Conread position: | 9-305 |
| Cow position: | chr22:12432021-12431723 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 169, 149 |
| Conread position: | 9-305 |
| Cow position: | chr22:12475662-12475364 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 9-305 |
| Cow position: | chr22:12499597-12499895 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 9-308 |
| Cow position: | chr22:12399789-12399488 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 12-197 |
| Cow position: | chr22:11641252-11641436 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 84 |
| Conread position: | 13-160 |
| Cow position: | chr22:12385103-12384956 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-238 |
| Cow position: | chr22:12431343-12431119 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 16-254 |
| Cow position: | chr22:12458630-12458390 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 189, 198 |
| Conread position: | 17-305 |
| Cow position: | chr22:12399445-12399155 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 197, 250 |
| Conread position: | 17-309 |
| Cow position: | chr22:12498849-12499143 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 18-305 |
| Cow position: | chr22:12385266-12384977 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 18-305 |
| Cow position: | chr22:12385604-12385313 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 196, 235 |
| Conread position: | 18-305 |
| Cow position: | chr22:12399696-12399407 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 196, 257 |
| Conread position: | 18-305 |
| Cow position: | chr22:12432264-12431975 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 196, 0 |
Show alignments to all cow chromosomes.