Cow genome map
| Conread name: | Ss1.1-rret01_o2.5 |
| Conread position: | 1-304 |
| Cow position: | chr25:33305273-33304971 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 212, 156 |
| Conread position: | 3-199 |
| Cow position: | chr25:34447406-34447602 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-212 |
| Cow position: | chr25:33157341-33157132 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-237 |
| Cow position: | chr25:34447322-34447557 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 3-238 |
| Cow position: | chr25:36801675-36801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 3-251 |
| Cow position: | chr25:33305354-33305108 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 210, 37 |
| Conread position: | 3-292 |
| Cow position: | chr25:36801339-36801630 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 3-293 |
| Cow position: | chr25:33157005-33156714 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 234, 247 |
| Conread position: | 4-159 |
| Cow position: | chr25:34433067-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 4-237 |
| Cow position: | chr25:34770077-34769841 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 5-209 |
| Cow position: | chr25:36801015-36801221 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 5-238 |
| Cow position: | chr25:34769572-34769336 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 5-308 |
| Cow position: | chr25:33299367-33299674 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 14, 272 |
| Conread position: | 6-255 |
| Cow position: | chr25:36800934-36801185 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 6-292 |
| Cow position: | chr25:33298782-33299070 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 6-292 |
| Cow position: | chr25:36800850-36801138 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 6-309 |
| Cow position: | chr25:23420434-23420739 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 7-209 |
| Cow position: | chr25:33298615-33298817 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-237 |
| Cow position: | chr25:34769903-34769673 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 90 |
| Conread position: | 8-295 |
| Cow position: | chr25:34714171-34714460 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 90, 95 |
| Conread position: | 9-190 |
| Cow position: | chr25:34714088-34714269 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-193 |
| Cow position: | chr25:33157251-33157067 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-193 |
| Cow position: | chr25:33157419-33157235 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-195 |
| Cow position: | chr25:33127856-33128042 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-199 |
| Cow position: | chr25:33127940-33128130 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-199 |
| Cow position: | chr25:36801765-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-204 |
| Cow position: | chr25:33299121-33299316 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-209 |
| Cow position: | chr25:33299205-33299405 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-209 |
| Cow position: | chr25:33299289-33299489 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-212 |
| Cow position: | chr25:33127772-33127975 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 88 |
| Conread position: | 9-237 |
| Cow position: | chr25:33305828-33305603 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 206, 105 |
| Conread position: | 9-237 |
| Cow position: | chr25:34769818-34769589 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 9-238 |
| Cow position: | chr25:23420605-23420835 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-242 |
| Cow position: | chr25:34769482-34769247 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 9-255 |
| Cow position: | chr25:33299625-33299866 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 9-294 |
| Cow position: | chr25:33145152-33145439 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 102 |
| Conread position: | 9-305 |
| Cow position: | chr25:33298533-33298831 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 162, 168 |
| Conread position: | 9-305 |
| Cow position: | chr25:33299457-33299755 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 212, 272 |
| Conread position: | 9-308 |
| Cow position: | chr25:33298701-33299002 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 9-308 |
| Cow position: | chr25:34769734-34769433 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 205, 241 |
| Conread position: | 9-309 |
| Cow position: | chr25:33298953-33299255 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 9-309 |
| Cow position: | chr25:36800769-36801071 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 9-371 |
| Cow position: | chr25:33305664-33305291 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 173, 345 |
| Conread position: | 10-262 |
| Cow position: | chr25:36800686-36800940 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 12-242 |
| Cow position: | chr25:34770151-34769919 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 12-255 |
| Cow position: | chr25:33305989-33305748 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 12 |
| Conread position: | 16-309 |
| Cow position: | chr25:36801520-36801815 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 17-209 |
| Cow position: | chr25:23420361-23420553 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-247 |
| Cow position: | chr25:33299045-33299275 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 196, 218 |
| Conread position: | 17-255 |
| Cow position: | chr25:36801605-36801845 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 17-305 |
| Cow position: | chr25:34447252-34447542 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 194, 258 |
| Conread position: | 17-312 |
| Cow position: | chr25:34769642-34769345 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 197, 260 |
| Conread position: | 18-199 |
| Cow position: | chr25:327070-327251 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 135, 141 |
| Conread position: | 30-212 |
| Cow position: | chr25:33298470-33298652 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 34-256 |
| Cow position: | chr25:33305723-33305499 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 41-253 |
| Cow position: | chr25:36800633-36800847 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 173, 0 |
Show alignments to all cow chromosomes.