Cow genome map
| Conread name: | Ss1.1-rret01_o2.5 |
| Conread position: | 1-155 |
| Cow position: | chr28:7758622-7758776 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-199 |
| Cow position: | chr28:9253401-9253599 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-256 |
| Cow position: | chr28:7810637-7810894 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-305 |
| Cow position: | chr28:7757546-7757852 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 204, 280 |
| Conread position: | 3-199 |
| Cow position: | chr28:33210360-33210556 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-209 |
| Cow position: | chr28:9290383-9290588 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 3-238 |
| Cow position: | chr28:11333921-11333685 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 3-255 |
| Cow position: | chr28:7757464-7757718 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 3-281 |
| Cow position: | chr28:7758052-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 138, 142 |
| Conread position: | 3-295 |
| Cow position: | chr28:7757800-7758094 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 211, 278 |
| Conread position: | 3-309 |
| Cow position: | chr28:9252983-9253291 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 211, 272 |
| Conread position: | 5-139 |
| Cow position: | chr28:7810807-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 9-160 |
| Cow position: | chr28:9253493-9253645 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 9-199 |
| Cow position: | chr28:9298704-9298893 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 9-209 |
| Cow position: | chr28:7810561-7810761 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 9-212 |
| Cow position: | chr28:7810729-7810932 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-245 |
| Cow position: | chr28:9298955-9299189 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 205, 39 |
| Conread position: | 9-254 |
| Cow position: | chr28:9290224-9290467 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 206, 18 |
| Conread position: | 9-284 |
| Cow position: | chr28:9253325-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-305 |
| Cow position: | chr28:7757722-7758020 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-305 |
| Cow position: | chr28:7810402-7810691 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 204, 123 |
| Conread position: | 9-305 |
| Cow position: | chr28:9298622-9298917 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 187, 45 |
| Conread position: | 9-307 |
| Cow position: | chr28:7758462-7758762 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 204, 280 |
| Conread position: | 9-309 |
| Cow position: | chr28:9253241-9253543 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-311 |
| Cow position: | chr28:9252904-9253209 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 10-212 |
| Cow position: | chr28:9299276-9299478 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-203 |
| Cow position: | chr28:9290476-9290666 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 14-212 |
| Cow position: | chr28:7810248-7810437 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 14-305 |
| Cow position: | chr28:9298876-9299167 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 197, 113 |
| Conread position: | 15-209 |
| Cow position: | chr28:9299365-9299559 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-199 |
| Cow position: | chr28:7758150-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-212 |
| Cow position: | chr28:7810326-7810521 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-302 |
| Cow position: | chr28:9299202-9299486 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 196, 15 |
| Conread position: | 17-305 |
| Cow position: | chr28:9290066-9290352 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 156, 142 |
| Conread position: | 17-305 |
| Cow position: | chr28:9298796-9299083 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 18-212 |
| Cow position: | chr28:7757983-7758177 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-242 |
| Cow position: | chr28:7758387-7758612 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 18-309 |
| Cow position: | chr28:9253166-9253459 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 196, 257 |
| Conread position: | 20-309 |
| Cow position: | chr28:7757397-7757688 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 41-305 |
| Cow position: | chr28:7757334-7757600 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 64 |
Show alignments to all cow chromosomes.