Cow genome map
| Conread name: | Ss1.1-rret01_o2.5 |
| Conread position: | 1-259 |
| Cow position: | chr7:3180581-3180841 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 10, 211 |
| Conread position: | 1-275 |
| Cow position: | chr7:42878558-42878280 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 1-305 |
| Cow position: | chr7:42878978-42878672 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-309 |
| Cow position: | chr7:1439599-1439911 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 3-161 |
| Cow position: | chr7:1440106-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-212 |
| Cow position: | chr7:3180417-3180626 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 169, 155 |
| Conread position: | 3-229 |
| Cow position: | chr7:42878472-42878246 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 199, 204 |
| Conread position: | 3-255 |
| Cow position: | chr7:42878640-42878386 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 3-298 |
| Cow position: | chr7:42878808-42878511 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 3-305 |
| Cow position: | chr7:42879228-42878924 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 211, 272 |
| Conread position: | 4-240 |
| Cow position: | chr7:1015154-1015393 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 5-212 |
| Cow position: | chr7:42879142-42878935 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-243 |
| Cow position: | chr7:1439521-1439763 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 173, 63 |
| Conread position: | 6-256 |
| Cow position: | chr7:1438468-1438720 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 162, 151 |
| Conread position: | 6-309 |
| Cow position: | chr7:1439858-1440162 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 209, 113 |
| Conread position: | 9-204 |
| Cow position: | chr7:18390216-18390411 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 9-232 |
| Cow position: | chr7:18390300-18390524 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 9-242 |
| Cow position: | chr7:1014993-1015228 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-242 |
| Cow position: | chr7:1015077-1015312 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 164, 148 |
| Conread position: | 9-245 |
| Cow position: | chr7:1440028-1440267 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 181, 149 |
| Conread position: | 9-295 |
| Cow position: | chr7:42878718-42878430 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 272 |
| Conread position: | 9-305 |
| Cow position: | chr7:1438387-1438685 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 204, 266 |
| Conread position: | 9-305 |
| Cow position: | chr7:42879054-42878756 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 9-309 |
| Cow position: | chr7:3179919-3180221 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 9-309 |
| Cow position: | chr7:3180087-3180389 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 205, 266 |
| Conread position: | 9-309 |
| Cow position: | chr7:3180255-3180557 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 205, 257 |
| Conread position: | 12-295 |
| Cow position: | chr7:42879303-42879018 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 202, 263 |
| Conread position: | 14-309 |
| Cow position: | chr7:1439950-1440246 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 200, 22 |
| Conread position: | 17-211 |
| Cow position: | chr7:1015253-1015447 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-305 |
| Cow position: | chr7:1439448-1439741 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 220, 140 |
| Conread position: | 17-309 |
| Cow position: | chr7:1014833-1015127 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 157, 161 |
| Conread position: | 17-309 |
| Cow position: | chr7:3179759-3180053 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 18-204 |
| Cow position: | chr7:3180516-3180702 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-308 |
| Cow position: | chr7:1014750-1015042 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 18-311 |
| Cow position: | chr7:3179844-3180139 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 195, 228 |
| Conread position: | 22-232 |
| Cow position: | chr7:11600868-11600657 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 192, 0 |
Show alignments to all cow chromosomes.