Cow genome map

Conread name: Ss1.1-rret12_i15.5

Conread position: 126-349
Cow position: chr11:7558324-7558530 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 162-347
Cow position: chr11:47644756-47644579 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 73

Conread position: 162-349
Cow position: chr11:3754833-3754648 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 112

Conread position: 162-349
Cow position: chr11:5045294-5045104 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 61, 113

Conread position: 162-349
Cow position: chr11:34809097-34809294 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 72, 14

Conread position: 162-349
Cow position: chr11:35467025-35466846 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 162-349
Cow position: chr11:75270153-75270342 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 65, 126

Conread position: 163-329
Cow position: chr11:42237810-42237650 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 163-346
Cow position: chr11:49706987-49707174 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 66, 116

Conread position: 163-349
Cow position: chr11:48751848-48752037 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 36, 13

Conread position: 163-349
Cow position: chr11:68872340-68872530 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 125

Conread position: 164-348
Cow position: chr11:32253711-32253525 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 65, 12

Conread position: 165-345
Cow position: chr11:1886353-1886183 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 21, 29

Conread position: 167-349
Cow position: chr11:3258134-3258319 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 62, 107

Conread position: 167-349
Cow position: chr11:86396960-86397129 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 168-344
Cow position: chr11:82800922-82800752 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 10, 23

Conread position: 168-347
Cow position: chr11:38845964-38846141 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 8

Conread position: 176-349
Cow position: chr11:37632432-37632608 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 56, 99

Conread position: 176-349
Cow position: chr11:73360304-73360481 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 25, 100

Conread position: 176-351
Cow position: chr11:32362584-32362419 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 186-347
Cow position: chr11:58556930-58557088 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 205-346
Cow position: chr11:17873400-17873534 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 214-343
Cow position: chr11:3392913-3392787 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 214-349
Cow position: chr11:33204588-33204456 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 214-349
Cow position: chr11:80930284-80930154 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 221-349
Cow position: chr11:13972698-13972821 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 224-348
Cow position: chr11:70095641-70095522 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 225-330
Cow position: chr11:60674251-60674148 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 91
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 225-349
Cow position: chr11:65574181-65574063 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 227-346
Cow position: chr11:36633221-36633337 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 227-347
Cow position: chr11:35277727-35277613 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 227-349
Cow position: chr11:12160649-12160767 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 227-349
Cow position: chr11:64459781-64459901 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 110
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 5, 43

Conread position: 227-350
Cow position: chr11:24655499-24655618 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 227-350
Cow position: chr11:75396847-75396727 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 227-383
Cow position: chr11:52481269-52481422 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 227-418
Cow position: chr11:84169993-84170186 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 162
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 124, 42

Conread position: 228-346
Cow position: chr11:67856025-67856140 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 228-349
Cow position: chr11:81578033-81577915 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 228-352
Cow position: chr11:63173508-63173388 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 229-349
Cow position: chr11:41402856-41402970 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 244-350
Cow position: chr11:21852126-21852022 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 29

Conread position: 249-349
Cow position: chr11:30366817-30366720 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 0

Show alignments to all cow chromosomes.