Cow genome map
| Conread name: | Ss1.1-rret12_i15.5 |
| Conread position: | 162-347 |
| Cow position: | chr2:33012589-33012399 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 118 |
| Conread position: | 162-349 |
| Cow position: | chr2:1148641-1148458 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 36 |
| Conread position: | 162-349 |
| Cow position: | chr2:10798324-10798510 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 77 |
| Conread position: | 162-349 |
| Cow position: | chr2:75845497-75845686 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 61, 100 |
| Conread position: | 162-350 |
| Cow position: | chr2:6588690-6588497 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 111 |
| Conread position: | 163-345 |
| Cow position: | chr2:63775965-63776146 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 127 |
| Conread position: | 163-347 |
| Cow position: | chr2:38964959-38965144 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 163-348 |
| Cow position: | chr2:2876586-2876417 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 163-349 |
| Cow position: | chr2:1222313-1222496 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 163-349 |
| Cow position: | chr2:6954121-6953926 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 163-349 |
| Cow position: | chr2:14604495-14604314 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 164-349 |
| Cow position: | chr2:58682725-58682922 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 167-350 |
| Cow position: | chr2:83939928-83939747 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 76 |
| Conread position: | 168-345 |
| Cow position: | chr2:10245456-10245282 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 31, 111 |
| Conread position: | 181-347 |
| Cow position: | chr2:69872084-69871920 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 48, 104 |
| Conread position: | 193-347 |
| Cow position: | chr2:40475339-40475181 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 58 |
| Conread position: | 222-355 |
| Cow position: | chr2:62252107-62252237 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 129, 5 |
| Conread position: | 225-348 |
| Cow position: | chr2:26511871-26511746 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 225-349 |
| Cow position: | chr2:16140766-16140884 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 227-330 |
| Cow position: | chr2:8997060-8996957 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-330 |
| Cow position: | chr2:9301369-9301472 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-345 |
| Cow position: | chr2:31378832-31378951 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 87, 57 |
| Conread position: | 227-345 |
| Cow position: | chr2:36320811-36320699 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 227-346 |
| Cow position: | chr2:65421916-65421800 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 227-349 |
| Cow position: | chr2:9328795-9328676 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 227-349 |
| Cow position: | chr2:33830667-33830548 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 227-349 |
| Cow position: | chr2:53351405-53351289 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 228-365 |
| Cow position: | chr2:79447114-79446976 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 229-347 |
| Cow position: | chr2:39650044-39649929 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 230-349 |
| Cow position: | chr2:42305348-42305237 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 249-347 |
| Cow position: | chr2:28011888-28011982 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.