Cow genome map
| Conread name: | Ss1.1-rret12_i15.5 |
| Conread position: | 161-349 |
| Cow position: | chr3:64079645-64079832 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 162-327 |
| Cow position: | chr3:39976972-39977130 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 162-347 |
| Cow position: | chr3:71500275-71500467 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 162-348 |
| Cow position: | chr3:15566525-15566341 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 61, 104 |
| Conread position: | 162-349 |
| Cow position: | chr3:44895741-44895931 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 114 |
| Conread position: | 162-349 |
| Cow position: | chr3:45635019-45634847 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 162-349 |
| Cow position: | chr3:59608712-59608901 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 162-349 |
| Cow position: | chr3:76960838-76961025 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 19, 111 |
| Conread position: | 163-348 |
| Cow position: | chr3:53193098-53192915 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 163-349 |
| Cow position: | chr3:73154943-73154739 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 55, 145 |
| Conread position: | 163-355 |
| Cow position: | chr3:74227752-74227556 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 163-355 |
| Cow position: | chr3:80294269-80294459 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 17, 63 |
| Conread position: | 166-348 |
| Cow position: | chr3:53245888-53246073 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 124 |
| Conread position: | 168-347 |
| Cow position: | chr3:69187232-69187050 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 107 |
| Conread position: | 173-338 |
| Cow position: | chr3:53132503-53132335 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 176-348 |
| Cow position: | chr3:73054990-73055165 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 201-349 |
| Cow position: | chr3:39251197-39251053 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 210-326 |
| Cow position: | chr3:947034-946920 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 210-349 |
| Cow position: | chr3:59676075-59676214 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 214-347 |
| Cow position: | chr3:75619024-75619152 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 55 |
| Conread position: | 225-347 |
| Cow position: | chr3:29553053-29553171 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 225-348 |
| Cow position: | chr3:19103591-19103472 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 118, 44 |
| Conread position: | 227-347 |
| Cow position: | chr3:65385484-65385602 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 227-349 |
| Cow position: | chr3:59811460-59811341 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 228-347 |
| Cow position: | chr3:25774461-25774347 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 228-349 |
| Cow position: | chr3:5415393-5415278 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 228-349 |
| Cow position: | chr3:28237125-28237240 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 229-349 |
| Cow position: | chr3:1416756-1416640 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 230-349 |
| Cow position: | chr3:67655221-67655334 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 241-348 |
| Cow position: | chr3:67190789-67190899 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.