Cow genome map

Conread name: Ss1.1-rret14_m21.5

Conread position: 1053-1295
Cow position: chr26:19636285-19636522 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 77, 124

Conread position: 1061-1288
Cow position: chr26:34060334-34060562 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 148
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 143, 0

Conread position: 1067-1278
Cow position: chr26:34724864-34724658 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 33, 0

Conread position: 1067-1283
Cow position: chr26:12940407-12940628 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 125, 187

Conread position: 1067-1283
Cow position: chr26:30861741-30861526 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 6

Conread position: 1067-1284
Cow position: chr26:32517449-32517245 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 1067-1292
Cow position: chr26:20825108-20824894 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 1068-1210
Cow position: chr26:33241897-33242039 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1068-1261
Cow position: chr26:27491490-27491296 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 127, 47

Conread position: 1068-1264
Cow position: chr26:13802121-13802311 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 1068-1266
Cow position: chr26:16783832-16784029 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 52

Conread position: 1068-1276
Cow position: chr26:11875213-11875010 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 118, 0

Conread position: 1068-1277
Cow position: chr26:20769859-20770066 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 110, 0

Conread position: 1068-1277
Cow position: chr26:22892437-22892232 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 111, 0

Conread position: 1068-1282
Cow position: chr26:23924858-23925063 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 110, 0

Conread position: 1068-1282
Cow position: chr26:31137456-31137245 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 86, 47

Conread position: 1068-1283
Cow position: chr26:7314630-7314849 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 125, 207

Conread position: 1068-1283
Cow position: chr26:12145110-12144894 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 199, 0

Conread position: 1068-1284
Cow position: chr26:16435648-16435428 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 106, 117

Conread position: 1068-1285
Cow position: chr26:20291684-20291470 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 110, 0

Conread position: 1068-1288
Cow position: chr26:19591491-19591704 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 110, 0

Conread position: 1068-1289
Cow position: chr26:28423295-28423513 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 33, 0

Conread position: 1068-1294
Cow position: chr26:8811135-8811366 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 106, 92

Conread position: 1068-1294
Cow position: chr26:9535526-9535747 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 211, 79

Conread position: 1068-1295
Cow position: chr26:11964120-11964352 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 5

Conread position: 1068-1295
Cow position: chr26:33253308-33253083 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 1068-1296
Cow position: chr26:34611173-34610952 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 118, 0

Conread position: 1069-1267
Cow position: chr26:29889502-29889309 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 135
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 1069-1279
Cow position: chr26:7148296-7148083 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 142
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 125, 0

Conread position: 1069-1282
Cow position: chr26:24240689-24240900 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 123, 43

Conread position: 1069-1284
Cow position: chr26:7687236-7687019 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 133, 117

Conread position: 1069-1284
Cow position: chr26:25526258-25526469 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 1069-1289
Cow position: chr26:28251162-28251383 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 26, 112

Conread position: 1069-1294
Cow position: chr26:647715-647488 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 7, 26

Conread position: 1069-1296
Cow position: chr26:5666057-5666275 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 84, 110

Conread position: 1069-1296
Cow position: chr26:23142095-23141867 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 105, 97

Conread position: 1069-1296
Cow position: chr26:33202061-33201837 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 109, 0

Conread position: 1070-1278
Cow position: chr26:19446144-19446354 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 122, 20

Conread position: 1071-1288
Cow position: chr26:33038212-33038000 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 108, 0

Conread position: 1072-1290
Cow position: chr26:10700891-10700675 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 9, 25

Conread position: 1073-1296
Cow position: chr26:8307515-8307296 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 209, 171

Conread position: 1075-1278
Cow position: chr26:4585195-4584995 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 1076-1278
Cow position: chr26:15132653-15132857 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 90, 99

Conread position: 1078-1287
Cow position: chr26:1328838-1328642 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 1078-1295
Cow position: chr26:26888115-26887902 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 96, 75

Conread position: 1079-1288
Cow position: chr26:12028218-12028009 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 96, 86

Conread position: 1079-1295
Cow position: chr26:9596084-9595862 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 76, 117

Conread position: 1080-1273
Cow position: chr26:6823179-6823371 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 126, 46

Conread position: 1080-1283
Cow position: chr26:29901047-29900839 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 114

Conread position: 1080-1287
Cow position: chr26:18825263-18825058 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 77, 82

Conread position: 1080-1294
Cow position: chr26:218438-218221 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 94, 85

Conread position: 1080-1296
Cow position: chr26:32029442-32029661 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 62

Conread position: 1083-1277
Cow position: chr26:34114285-34114480 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 79

Conread position: 1083-1285
Cow position: chr26:16585458-16585650 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 136, 82

Conread position: 1083-1287
Cow position: chr26:12893404-12893202 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 191, 78

Conread position: 1083-1295
Cow position: chr26:4854568-4854778 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 205, 61

Conread position: 1083-1296
Cow position: chr26:586856-586639 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 72, 48

Conread position: 1084-1283
Cow position: chr26:23481227-23481029 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 191, 72

Conread position: 1084-1294
Cow position: chr26:9099508-9099300 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 71, 79

Conread position: 1084-1296
Cow position: chr26:16796182-16795981 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 1085-1283
Cow position: chr26:7525178-7524985 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 157, 30

Conread position: 1085-1288
Cow position: chr26:6487766-6487564 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 183, 94

Conread position: 1085-1292
Cow position: chr26:13863009-13862809 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 30, 0

Conread position: 1086-1288
Cow position: chr26:9491951-9492146 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 194, 29

Conread position: 1086-1296
Cow position: chr26:27482537-27482326 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 70, 18

Conread position: 1087-1295
Cow position: chr26:35553438-35553649 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 95, 78

Conread position: 1088-1278
Cow position: chr26:8811500-8811691 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 132
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 79, 43

Conread position: 1088-1294
Cow position: chr26:32566039-32566243 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 201, 90

Conread position: 1090-1276
Cow position: chr26:5836790-5836603 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 103, 0

Conread position: 1090-1295
Cow position: chr26:19459723-19459930 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 154, 75

Conread position: 1092-1276
Cow position: chr26:31888764-31888944 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 1092-1296
Cow position: chr26:3930502-3930296 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 1096-1277
Cow position: chr26:33112350-33112171 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 72, 83

Conread position: 1096-1282
Cow position: chr26:13705741-13705548 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 117, 82

Conread position: 1102-1281
Cow position: chr26:34560129-34559952 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 77, 0

Conread position: 1102-1285
Cow position: chr26:34026995-34026809 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 73

Conread position: 1107-1288
Cow position: chr26:10502776-10502952 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 72

Conread position: 1108-1260
Cow position: chr26:29897235-29897382 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 1108-1283
Cow position: chr26:31712020-31711842 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 1112-1295
Cow position: chr26:21319998-21320180 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 166, 67

Conread position: 1117-1295
Cow position: chr26:5168450-5168625 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 1133-1296
Cow position: chr26:13292744-13292908 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 121

Conread position: 1134-1282
Cow position: chr26:13022536-13022683 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 1140-1283
Cow position: chr26:5307196-5307339 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 131

Show alignments to all cow chromosomes.