Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rret14_m21.5
        

               Conread position:
               1050-1283
               

               Cow position:
               chr9:48730487-48730251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               55, 77
               

               Conread position:
               1051-1288
               

               Cow position:
               chr9:42586504-42586730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               228, 15
               

               Conread position:
               1057-1283
               

               Cow position:
               chr9:8613162-8613389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               77, 120
               

               Conread position:
               1060-1277
               

               Cow position:
               chr9:12773734-12773524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               1060-1289
               

               Cow position:
               chr9:12129353-12129127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               24, 11
               

               Conread position:
               1061-1290
               

               Cow position:
               chr9:11123440-11123663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1061-1295
               

               Cow position:
               chr9:8992134-8992369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               121, 103
               

               Conread position:
               1065-1296
               

               Cow position:
               chr9:41644709-41644945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               133, 96
               

               Conread position:
               1067-1277
               

               Cow position:
               chr9:56453375-56453176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               1067-1279
               

               Cow position:
               chr9:57131534-57131326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               1067-1282
               

               Cow position:
               chr9:26344929-26345137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               1067-1283
               

               Cow position:
               chr9:36628157-36627947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               1067-1293
               

               Cow position:
               chr9:26394314-26394534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               1067-1296
               

               Cow position:
               chr9:33584646-33584875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               176
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               215, 111
               

               Conread position:
               1068-1203
               

               Cow position:
               chr9:7634309-7634176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               1068-1210
               

               Cow position:
               chr9:8562858-8562720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               1068-1210
               

               Cow position:
               chr9:55354649-55354509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               1068-1247
               

               Cow position:
               chr9:33119850-33120031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               1068-1261
               

               Cow position:
               chr9:29194986-29195186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               1068-1262
               

               Cow position:
               chr9:29006595-29006404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               1068-1265
               

               Cow position:
               chr9:22165675-22165875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               1068-1265
               

               Cow position:
               chr9:34958018-34958210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               1068-1277
               

               Cow position:
               chr9:41785248-41785051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               1068-1277
               

               Cow position:
               chr9:52267720-52267932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               124, 47
               

               Conread position:
               1068-1277
               

               Cow position:
               chr9:56032277-56032487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               92, 98
               

               Conread position:
               1068-1278
               

               Cow position:
               chr9:11098418-11098622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1068-1278
               

               Cow position:
               chr9:12337940-12337729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               1068-1278
               

               Cow position:
               chr9:33151780-33151578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               1068-1278
               

               Cow position:
               chr9:55256514-55256720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               1068-1279
               

               Cow position:
               chr9:43757579-43757372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               41, 114
               

               Conread position:
               1068-1279
               

               Cow position:
               chr9:45285497-45285711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               166
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               1068-1281
               

               Cow position:
               chr9:24887244-24887031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               160
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1068-1281
               

               Cow position:
               chr9:41283053-41282838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1068-1282
               

               Cow position:
               chr9:13670672-13670460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               26, 119
               

               Conread position:
               1068-1282
               

               Cow position:
               chr9:37199165-37198952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               141, 110
               

               Conread position:
               1068-1282
               

               Cow position:
               chr9:59997998-59998204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               201, 47
               

               Conread position:
               1068-1282
               

               Cow position:
               chr9:63361681-63361886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:4341121-4341332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               166
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:9311896-9311682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               208, 97
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:9460019-9459813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               53, 22
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:9552128-9551911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               186, 114
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:9595912-9596126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               48, 122
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:20318534-20318751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               121, 102
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:22440444-22440650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               105, 47
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:33218917-33219131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               133, 5
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:34283991-34283781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               137, 110
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:36490860-36491080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:52689573-52689791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               13, 5
               

               Conread position:
               1068-1283
               

               Cow position:
               chr9:55795793-55795582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               1068-1284
               

               Cow position:
               chr9:30012911-30012693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               106, 98
               

               Conread position:
               1068-1285
               

               Cow position:
               chr9:4241444-4241230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               90, 119
               

               Conread position:
               1068-1285
               

               Cow position:
               chr9:61303038-61302826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1068-1287
               

               Cow position:
               chr9:48628066-48627844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               141, 110
               

               Conread position:
               1068-1288
               

               Cow position:
               chr9:23955942-23956158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               1068-1288
               

               Cow position:
               chr9:39011431-39011646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               174, 0
               

               Conread position:
               1068-1288
               

               Cow position:
               chr9:59013304-59013518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               146, 46
               

               Conread position:
               1068-1288
               

               Cow position:
               chr9:59699509-59699733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               106, 182
               

               Conread position:
               1068-1289
               

               Cow position:
               chr9:6338831-6338608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               85, 119
               

               Conread position:
               1068-1289
               

               Cow position:
               chr9:47590943-47591169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               106, 98
               

               Conread position:
               1068-1292
               

               Cow position:
               chr9:15805885-15806113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               87, 125
               

               Conread position:
               1068-1294
               

               Cow position:
               chr9:26279131-26279359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               124, 205
               

               Conread position:
               1068-1294
               

               Cow position:
               chr9:54411120-54411353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               88, 119
               

               Conread position:
               1068-1295
               

               Cow position:
               chr9:53762734-53762511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               31, 122
               

               Conread position:
               1068-1296
               

               Cow position:
               chr9:5327296-5327072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               212, 114
               

               Conread position:
               1068-1296
               

               Cow position:
               chr9:28747482-28747705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               1068-1296
               

               Cow position:
               chr9:31346987-31346757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               210, 34
               

               Conread position:
               1068-1296
               

               Cow position:
               chr9:32387946-32388175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               92, 133
               

               Conread position:
               1068-1296
               

               Cow position:
               chr9:34286837-34286611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               171
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               207, 0
               

               Conread position:
               1068-1296
               

               Cow position:
               chr9:45141562-45141785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               1068-1296
               

               Cow position:
               chr9:58131915-58132139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               206, 89
               

               Conread position:
               1069-1210
               

               Cow position:
               chr9:4267944-4268086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               1069-1260
               

               Cow position:
               chr9:54493172-54492985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1069-1264
               

               Cow position:
               chr9:64105936-64105746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               1069-1266
               

               Cow position:
               chr9:33823155-33822958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               105, 182
               

               Conread position:
               1069-1277
               

               Cow position:
               chr9:13743893-13744104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               122, 86
               

               Conread position:
               1069-1277
               

               Cow position:
               chr9:52518785-52518991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               7, 92
               

               Conread position:
               1069-1280
               

               Cow position:
               chr9:8628881-8629085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               1069-1283
               

               Cow position:
               chr9:5104366-5104586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               122, 58
               

               Conread position:
               1069-1283
               

               Cow position:
               chr9:5342211-5342422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               1069-1283
               

               Cow position:
               chr9:17799663-17799460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               61, 83
               

               Conread position:
               1069-1283
               

               Cow position:
               chr9:41416370-41416153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               91, 111
               

               Conread position:
               1069-1285
               

               Cow position:
               chr9:28726687-28726906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               88, 205
               

               Conread position:
               1069-1287
               

               Cow position:
               chr9:52763723-52763934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               206, 95
               

               Conread position:
               1069-1288
               

               Cow position:
               chr9:6189328-6189543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               168
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               1069-1288
               

               Cow position:
               chr9:18380899-18380686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               214, 46
               

               Conread position:
               1069-1288
               

               Cow position:
               chr9:21292370-21292588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               30, 110
               

               Conread position:
               1069-1291
               

               Cow position:
               chr9:34410359-34410577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               1069-1294
               

               Cow position:
               chr9:9723842-9724067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               94, 46
               

               Conread position:
               1069-1295
               

               Cow position:
               chr9:9686377-9686607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               137, 30
               

               Conread position:
               1069-1296
               

               Cow position:
               chr9:6397746-6397974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               45, 96
               

               Conread position:
               1069-1296
               

               Cow position:
               chr9:6954212-6954442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               81, 102
               

               Conread position:
               1070-1265
               

               Cow position:
               chr9:52578502-52578696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               112, 89
               

               Conread position:
               1070-1276
               

               Cow position:
               chr9:17872074-17872276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               1070-1279
               

               Cow position:
               chr9:21460118-21460325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               130, 45
               

               Conread position:
               1070-1283
               

               Cow position:
               chr9:8636703-8636502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               1070-1287
               

               Cow position:
               chr9:41728294-41728080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               168
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               1070-1288
               

               Cow position:
               chr9:53109286-53109069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               106, 42
               

               Conread position:
               1070-1288
               

               Cow position:
               chr9:60395012-60395230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1070-1295
               

               Cow position:
               chr9:37950862-37951089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               106, 24
               

               Conread position:
               1070-1296
               

               Cow position:
               chr9:14974883-14975122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               44, 39
               

               Conread position:
               1070-1296
               

               Cow position:
               chr9:38793052-38792828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               75, 119
               

               Conread position:
               1071-1283
               

               Cow position:
               chr9:51620477-51620268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               142, 44
               

               Conread position:
               1071-1286
               

               Cow position:
               chr9:6192424-6192636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               53, 108
               

               Conread position:
               1071-1296
               

               Cow position:
               chr9:43202369-43202148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               1072-1296
               

               Cow position:
               chr9:7543227-7543446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               61, 16
               

               Conread position:
               1072-1296
               

               Cow position:
               chr9:11380611-11380836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               23, 108
               

               Conread position:
               1074-1278
               

               Cow position:
               chr9:17840646-17840850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1075-1273
               

               Cow position:
               chr9:43159784-43159589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               19, 101
               

               Conread position:
               1075-1276
               

               Cow position:
               chr9:44758900-44759096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               80, 51
               

               Conread position:
               1075-1282
               

               Cow position:
               chr9:45484142-45483933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               114, 92
               

               Conread position:
               1075-1287
               

               Cow position:
               chr9:5263529-5263322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               200, 45
               

               Conread position:
               1080-1210
               

               Cow position:
               chr9:6293621-6293492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               1080-1265
               

               Cow position:
               chr9:44944452-44944631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               1080-1275
               

               Cow position:
               chr9:34707286-34707479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               186, 60
               

               Conread position:
               1080-1277
               

               Cow position:
               chr9:27345558-27345759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               1080-1282
               

               Cow position:
               chr9:42508858-42508653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               58, 109
               

               Conread position:
               1080-1284
               

               Cow position:
               chr9:32815678-32815474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               94, 82
               

               Conread position:
               1080-1285
               

               Cow position:
               chr9:34374898-34375105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               1080-1296
               

               Cow position:
               chr9:12910375-12910587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               1080-1296
               

               Cow position:
               chr9:13169637-13169853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               121, 98
               

               Conread position:
               1082-1264
               

               Cow position:
               chr9:17740918-17741096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               1082-1283
               

               Cow position:
               chr9:35547292-35547088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               72, 104
               

               Conread position:
               1083-1258
               

               Cow position:
               chr9:20637396-20637224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               1083-1277
               

               Cow position:
               chr9:40603691-40603497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1083-1279
               

               Cow position:
               chr9:151891-151694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               72, 45
               

               Conread position:
               1083-1281
               

               Cow position:
               chr9:31359628-31359430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               23, 79
               

               Conread position:
               1083-1283
               

               Cow position:
               chr9:59586334-59586138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               143, 82
               

               Conread position:
               1083-1288
               

               Cow position:
               chr9:14738272-14738071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               1083-1296
               

               Cow position:
               chr9:8998372-8998162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               93, 82
               

               Conread position:
               1083-1296
               

               Cow position:
               chr9:41470075-41470289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               86, 81
               

               Conread position:
               1083-1296
               

               Cow position:
               chr9:43680143-43679932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               206, 88
               

               Conread position:
               1084-1283
               

               Cow position:
               chr9:36458021-36457820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               115, 87
               

               Conread position:
               1084-1285
               

               Cow position:
               chr9:15215665-15215868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               32, 28
               

               Conread position:
               1084-1296
               

               Cow position:
               chr9:5186845-5187048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               1084-1296
               

               Cow position:
               chr9:13993787-13993573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               113, 81
               

               Conread position:
               1084-1296
               

               Cow position:
               chr9:35295712-35295505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               192, 110
               

               Conread position:
               1085-1265
               

               Cow position:
               chr9:64310758-64310937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               133, 30
               

               Conread position:
               1085-1283
               

               Cow position:
               chr9:59897610-59897420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               1085-1288
               

               Cow position:
               chr9:26477237-26477029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               113, 80
               

               Conread position:
               1086-1265
               

               Cow position:
               chr9:1712686-1712866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               106, 97
               

               Conread position:
               1086-1288
               

               Cow position:
               chr9:19718320-19718515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               1086-1293
               

               Cow position:
               chr9:34024719-34024514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               119, 92
               

               Conread position:
               1086-1296
               

               Cow position:
               chr9:23840374-23840593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               106, 204
               

               Conread position:
               1087-1296
               

               Cow position:
               chr9:24079321-24079112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               182, 99
               

               Conread position:
               1088-1265
               

               Cow position:
               chr9:52998362-52998536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1088-1278
               

               Cow position:
               chr9:40984523-40984333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               125, 91
               

               Conread position:
               1088-1282
               

               Cow position:
               chr9:55807649-55807459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               1089-1289
               

               Cow position:
               chr9:5068858-5068654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               1089-1293
               

               Cow position:
               chr9:32052293-32052088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               142, 97
               

               Conread position:
               1090-1266
               

               Cow position:
               chr9:32773229-32773063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               1090-1288
               

               Cow position:
               chr9:19771378-19771179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               162, 151
               

               Conread position:
               1090-1296
               

               Cow position:
               chr9:32662015-32662226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               1093-1288
               

               Cow position:
               chr9:17027210-17027013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               156, 72
               

               Conread position:
               1093-1291
               

               Cow position:
               chr9:12786460-12786659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               29, 24
               

               Conread position:
               1094-1288
               

               Cow position:
               chr9:8834115-8834312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               75, 70
               

               Conread position:
               1094-1295
               

               Cow position:
               chr9:28315441-28315238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               70, 81
               

               Conread position:
               1096-1296
               

               Cow position:
               chr9:48900826-48901026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               102, 148
               

               Conread position:
               1099-1279
               

               Cow position:
               chr9:61022630-61022447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               1099-1283
               

               Cow position:
               chr9:34423629-34423442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               17, 73
               

               Conread position:
               1100-1268
               

               Cow position:
               chr9:30123932-30123769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               113, 15
               

               Conread position:
               1101-1296
               

               Cow position:
               chr9:61300972-61301168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               173, 87
               

               Conread position:
               1102-1285
               

               Cow position:
               chr9:33101111-33101282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               1103-1278
               

               Cow position:
               chr9:34666444-34666281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               1104-1288
               

               Cow position:
               chr9:44918279-44918457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               137, 8
               

               Conread position:
               1104-1296
               

               Cow position:
               chr9:55013330-55013533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               66, 22
               

               Conread position:
               1106-1288
               

               Cow position:
               chr9:26388208-26388035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               1106-1288
               

               Cow position:
               chr9:34760364-34760548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               59, 69
               

               Conread position:
               1106-1296
               

               Cow position:
               chr9:61019362-61019554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               49, 75
               

               Conread position:
               1107-1295
               

               Cow position:
               chr9:11447809-11447997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               168, 65
               

               Conread position:
               1116-1287
               

               Cow position:
               chr9:9495146-9494979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               1117-1279
               

               Cow position:
               chr9:28773128-28772969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1117-1281
               

               Cow position:
               chr9:2037430-2037262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               1117-1282
               

               Cow position:
               chr9:12269019-12268860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               1117-1288
               

               Cow position:
               chr9:53323795-53323968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               85, 62
               

               Conread position:
               1118-1287
               

               Cow position:
               chr9:1917967-1917801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               160, 60
               

               Conread position:
               1121-1279
               

               Cow position:
               chr9:52754865-52755024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               80, 43
               

               Conread position:
               1123-1283
               

               Cow position:
               chr9:8537291-8537130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               43, 58
               

               Conread position:
               1124-1296
               

               Cow position:
               chr9:30194993-30194822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               55, 65
               

               Conread position:
               1135-1296
               

               Cow position:
               chr9:6237522-6237681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               147, 44
               

               Conread position:
               1140-1288
               

               Cow position:
               chr9:21816497-21816350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               1141-1282
               

               Cow position:
               chr9:9516788-9516922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               77, 38
               
Show alignments to all cow chromosomes.
Conread position:	1050-1283
Cow position:	chr9:48730487-48730251 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	163
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	55, 77
Conread position:	1051-1288
Cow position:	chr9:42586504-42586730 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	168
Alignm E-value:	5e-28
Alignm gaps (pig, cow):	228, 15
Conread position:	1057-1283
Cow position:	chr9:8613162-8613389 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	152
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	77, 120
Conread position:	1060-1277
Cow position:	chr9:12773734-12773524 (view UCSC Genome Browser custom track)
Alignm length:	218
Alignm identity:	165
Alignm E-value:	2e-38
Alignm gaps (pig, cow):	15, 0
Conread position:	1060-1289
Cow position:	chr9:12129353-12129127 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	157
Alignm E-value:	3e-23
Alignm gaps (pig, cow):	24, 11
Conread position:	1061-1290
Cow position:	chr9:11123440-11123663 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	156
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	69, 0
Conread position:	1061-1295
Cow position:	chr9:8992134-8992369 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	161
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	121, 103
Conread position:	1065-1296
Cow position:	chr9:41644709-41644945 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	164
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	133, 96
Conread position:	1067-1277
Cow position:	chr9:56453375-56453176 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	153
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	32, 0
Conread position:	1067-1279
Cow position:	chr9:57131534-57131326 (view UCSC Genome Browser custom track)
Alignm length:	213
Alignm identity:	158
Alignm E-value:	1e-36
Alignm gaps (pig, cow):	111, 0
Conread position:	1067-1282
Cow position:	chr9:26344929-26345137 (view UCSC Genome Browser custom track)
Alignm length:	216
Alignm identity:	154
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	98, 0
Conread position:	1067-1283
Cow position:	chr9:36628157-36627947 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	160
Alignm E-value:	4e-35
Alignm gaps (pig, cow):	111, 0
Conread position:	1067-1293
Cow position:	chr9:26394314-26394534 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	169
Alignm E-value:	2e-38
Alignm gaps (pig, cow):	13, 0
Conread position:	1067-1296
Cow position:	chr9:33584646-33584875 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	176
Alignm E-value:	9.80909e-45
Alignm gaps (pig, cow):	215, 111
Conread position:	1068-1203
Cow position:	chr9:7634309-7634176 (view UCSC Genome Browser custom track)
Alignm length:	136
Alignm identity:	102
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	110, 0
Conread position:	1068-1210
Cow position:	chr9:8562858-8562720 (view UCSC Genome Browser custom track)
Alignm length:	143
Alignm identity:	110
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	44, 0
Conread position:	1068-1247
Cow position:	chr9:33119850-33120031 (view UCSC Genome Browser custom track)
Alignm length:	182
Alignm identity:	131
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	136, 0
Conread position:	1068-1261
Cow position:	chr9:29194986-29195186 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	142
Alignm E-value:	4e-25
Alignm gaps (pig, cow):	106, 0
Conread position:	1068-1262
Cow position:	chr9:29006595-29006404 (view UCSC Genome Browser custom track)
Alignm length:	195
Alignm identity:	146
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	110, 0
Conread position:	1068-1265
Cow position:	chr9:22165675-22165875 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	144
Alignm E-value:	6e-29
Alignm gaps (pig, cow):	107, 0