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Cow genome map

           
Conread name:
           
Ss1.1-rret33_d17.5
        

               
Conread position:
               
43-505
               

               
Cow position:
               
chr4:10534031-10533566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
210, 399
               

               
Conread position:
               
58-547
               

               
Cow position:
               
chr4:42399766-42399267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
195, 385
               

               
Conread position:
               
86-548
               

               
Cow position:
               
chr4:23526209-23526683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
100-434
               

               
Cow position:
               
chr4:16814225-16813910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
105-504
               

               
Cow position:
               
chr4:22115123-22115547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
20, 121
               

               
Conread position:
               
106-505
               

               
Cow position:
               
chr4:962113-961721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
106-552
               

               
Cow position:
               
chr4:10055744-10056203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
108-562
               

               
Cow position:
               
chr4:27918956-27918489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 337
               

               
Conread position:
               
110-560
               

               
Cow position:
               
chr4:25889310-25888830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
111-255
               

               
Cow position:
               
chr4:19598138-19597993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
111-505
               

               
Cow position:
               
chr4:36971390-36971002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 160
               

               
Conread position:
               
112-568
               

               
Cow position:
               
chr4:14152617-14153105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 349
               

               
Conread position:
               
114-294
               

               
Cow position:
               
chr4:54334791-54334620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
114-442
               

               
Cow position:
               
chr4:23535797-23536130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
114-454
               

               
Cow position:
               
chr4:28138289-28137942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 96
               

               
Conread position:
               
114-471
               

               
Cow position:
               
chr4:18255412-18255761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 274
               

               
Conread position:
               
114-498
               

               
Cow position:
               
chr4:10026049-10026414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
208, 13
               

               
Conread position:
               
114-504
               

               
Cow position:
               
chr4:65891564-65891931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
114-574
               

               
Cow position:
               
chr4:65826320-65825828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 133
               

               
Conread position:
               
115-240
               

               
Cow position:
               
chr4:10411711-10411838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
115-292
               

               
Cow position:
               
chr4:43840475-43840296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
115-295
               

               
Cow position:
               
chr4:19410041-19410229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
115-296
               

               
Cow position:
               
chr4:2601706-2601892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 141
               

               
Conread position:
               
115-300
               

               
Cow position:
               
chr4:57721388-57721572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 163
               

               
Conread position:
               
115-392
               

               
Cow position:
               
chr4:23578501-23578769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
115-419
               

               
Cow position:
               
chr4:14754939-14754628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
115-448
               

               
Cow position:
               
chr4:10041578-10041923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
17, 301
               

               
Conread position:
               
115-456
               

               
Cow position:
               
chr4:55508869-55508523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 103
               

               
Conread position:
               
115-457
               

               
Cow position:
               
chr4:44450037-44449687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 163
               

               
Conread position:
               
115-483
               

               
Cow position:
               
chr4:10038831-10039202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
115-491
               

               
Cow position:
               
chr4:14927498-14927887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 246
               

               
Conread position:
               
115-498
               

               
Cow position:
               
chr4:9136827-9137211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
115-498
               

               
Cow position:
               
chr4:11201369-11201752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 169
               

               
Conread position:
               
115-502
               

               
Cow position:
               
chr4:14941862-14942258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
17, 124
               

               
Conread position:
               
115-505
               

               
Cow position:
               
chr4:7501435-7501808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 204
               

               
Conread position:
               
115-505
               

               
Cow position:
               
chr4:51783724-51784118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
115-531
               

               
Cow position:
               
chr4:61391650-61391238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
115-548
               

               
Cow position:
               
chr4:42480735-42481172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 164
               

               
Conread position:
               
115-560
               

               
Cow position:
               
chr4:19541672-19542140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
115-574
               

               
Cow position:
               
chr4:3850101-3850567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
115-574
               

               
Cow position:
               
chr4:44839334-44838876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
115-576
               

               
Cow position:
               
chr4:33097407-33096959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
116-300
               

               
Cow position:
               
chr4:44073264-44073076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
116-426
               

               
Cow position:
               
chr4:4487475-4487784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
137, 8
               

               
Conread position:
               
116-430
               

               
Cow position:
               
chr4:34202780-34203101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 54
               

               
Conread position:
               
116-472
               

               
Cow position:
               
chr4:13142971-13142635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
116-503
               

               
Cow position:
               
chr4:24119361-24118969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 330
               

               
Conread position:
               
116-504
               

               
Cow position:
               
chr4:34197726-34198128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
116-506
               

               
Cow position:
               
chr4:27292409-27292015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 144
               

               
Conread position:
               
116-530
               

               
Cow position:
               
chr4:17877469-17877889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 8
               

               
Conread position:
               
116-558
               

               
Cow position:
               
chr4:15904658-15905098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
116-560
               

               
Cow position:
               
chr4:53125682-53126116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 12
               

               
Conread position:
               
116-568
               

               
Cow position:
               
chr4:66173247-66172786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 166
               

               
Conread position:
               
116-574
               

               
Cow position:
               
chr4:34383800-34383325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
117-425
               

               
Cow position:
               
chr4:48409997-48409690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 119
               

               
Conread position:
               
117-484
               

               
Cow position:
               
chr4:10036080-10036445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
117-487
               

               
Cow position:
               
chr4:23555642-23556011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
117-498
               

               
Cow position:
               
chr4:21058840-21058450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 357
               

               
Conread position:
               
117-505
               

               
Cow position:
               
chr4:10036965-10037354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
118-472
               

               
Cow position:
               
chr4:22259873-22259519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
118-502
               

               
Cow position:
               
chr4:26549006-26549397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
118-551
               

               
Cow position:
               
chr4:37470124-37470537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
136, 31
               

               
Conread position:
               
118-552
               

               
Cow position:
               
chr4:14919564-14919987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
11, 110
               

               
Conread position:
               
118-574
               

               
Cow position:
               
chr4:12003777-12004234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 73
               

               
Conread position:
               
119-328
               

               
Cow position:
               
chr4:6414261-6414475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
119-328
               

               
Cow position:
               
chr4:6446265-6446479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
119-505
               

               
Cow position:
               
chr4:26398883-26399277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
9, 327
               

               
Conread position:
               
120-272
               

               
Cow position:
               
chr4:23508832-23508986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
120-284
               

               
Cow position:
               
chr4:33357415-33357584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
120-298
               

               
Cow position:
               
chr4:6856609-6856788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
120-298
               

               
Cow position:
               
chr4:41866762-41866945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
120-300
               

               
Cow position:
               
chr4:46370407-46370222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
120-308
               

               
Cow position:
               
chr4:16092064-16091876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
120-367
               

               
Cow position:
               
chr4:10837810-10837551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
120-402
               

               
Cow position:
               
chr4:33090201-33089906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
120-437
               

               
Cow position:
               
chr4:26008998-26009324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
120-437
               

               
Cow position:
               
chr4:49698141-49698477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
120-442
               

               
Cow position:
               
chr4:49409018-49409348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
120-494
               

               
Cow position:
               
chr4:37620341-37619958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 207
               

               
Conread position:
               
120-500
               

               
Cow position:
               
chr4:38181241-38181614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
8, 180
               

               
Conread position:
               
120-505
               

               
Cow position:
               
chr4:17473974-17474379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 225
               

               
Conread position:
               
120-505
               

               
Cow position:
               
chr4:23647282-23646906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
120-541
               

               
Cow position:
               
chr4:16602502-16602069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
120-552
               

               
Cow position:
               
chr4:10017027-10016610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
120-574
               

               
Cow position:
               
chr4:5623643-5623187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 10
               

               
Conread position:
               
120-574
               

               
Cow position:
               
chr4:41441117-41441583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 328
               

               
Conread position:
               
120-574
               

               
Cow position:
               
chr4:61972923-61972447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 186
               

               
Conread position:
               
122-504
               

               
Cow position:
               
chr4:57931455-57931852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 273
               

               
Conread position:
               
124-283
               

               
Cow position:
               
chr4:35981484-35981643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
129, 137
               

               
Conread position:
               
124-571
               

               
Cow position:
               
chr4:10403845-10404303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 319
               

               
Conread position:
               
126-326
               

               
Cow position:
               
chr4:4283362-4283162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
127-305
               

               
Cow position:
               
chr4:45712063-45711884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
127-311
               

               
Cow position:
               
chr4:55395046-55395228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
127-501
               

               
Cow position:
               
chr4:44051795-44052170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
127-505
               

               
Cow position:
               
chr4:10424997-10425380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
126, 316
               

               
Conread position:
               
127-547
               

               
Cow position:
               
chr4:10420761-10421191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
126, 316
               

               
Conread position:
               
127-571
               

               
Cow position:
               
chr4:9005839-9006294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
126, 333
               

               
Conread position:
               
127-571
               

               
Cow position:
               
chr4:29312498-29312952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
126, 151
               

               
Conread position:
               
128-295
               

               
Cow position:
               
chr4:27504513-27504684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
128-310
               

               
Cow position:
               
chr4:19493082-19493266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
128-326
               

               
Cow position:
               
chr4:59643142-59643343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
125, 63
               

               
Conread position:
               
128-377
               

               
Cow position:
               
chr4:48142344-48142594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
128-444
               

               
Cow position:
               
chr4:14812960-14812649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
128-451
               

               
Cow position:
               
chr4:1436153-1435836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 151
               

               
Conread position:
               
128-468
               

               
Cow position:
               
chr4:12018124-12018465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
200, 125
               

               
Conread position:
               
128-468
               

               
Cow position:
               
chr4:33366663-33366324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
125, 78
               

               
Conread position:
               
128-498
               

               
Cow position:
               
chr4:15813775-15813427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
125, 62
               

               
Conread position:
               
128-503
               

               
Cow position:
               
chr4:15872158-15871781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 138
               

               
Conread position:
               
128-505
               

               
Cow position:
               
chr4:26323305-26323677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 150
               

               
Conread position:
               
128-505
               

               
Cow position:
               
chr4:39422116-39422498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 317
               

               
Conread position:
               
128-506
               

               
Cow position:
               
chr4:2263191-2262809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 316
               

               
Conread position:
               
128-530
               

               
Cow position:
               
chr4:10136107-10136505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 62
               

               
Conread position:
               
128-534
               

               
Cow position:
               
chr4:27466258-27466666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
128-542
               

               
Cow position:
               
chr4:11924829-11924414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 311
               

               
Conread position:
               
128-550
               

               
Cow position:
               
chr4:46526563-46526986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 106
               

               
Conread position:
               
128-571
               

               
Cow position:
               
chr4:2591011-2590558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
125, 315
               

               
Conread position:
               
128-572
               

               
Cow position:
               
chr4:10916260-10915827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 86
               

               
Conread position:
               
128-576
               

               
Cow position:
               
chr4:19096860-19097306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 61
               

               
Conread position:
               
129-298
               

               
Cow position:
               
chr4:45073943-45073770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
37, 154
               

               
Conread position:
               
129-313
               

               
Cow position:
               
chr4:1864714-1864899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
129-319
               

               
Cow position:
               
chr4:652549-652740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
129-319
               

               
Cow position:
               
chr4:47894990-47894799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
129-320
               

               
Cow position:
               
chr4:13375139-13375331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
129-329
               

               
Cow position:
               
chr4:9375571-9375369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
129-329
               

               
Cow position:
               
chr4:31774797-31774595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
129-330
               

               
Cow position:
               
chr4:8414796-8414593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
129-336
               

               
Cow position:
               
chr4:31484192-31483984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
63, 47
               

               
Conread position:
               
129-397
               

               
Cow position:
               
chr4:54812064-54812334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
129-419
               

               
Cow position:
               
chr4:48959330-48959040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
124, 84
               

               
Conread position:
               
129-427
               

               
Cow position:
               
chr4:7260289-7259991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
124, 275
               

               
Conread position:
               
129-450
               

               
Cow position:
               
chr4:20025158-20025484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-450
               

               
Cow position:
               
chr4:50019027-50018701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-481
               

               
Cow position:
               
chr4:18331608-18331965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-496
               

               
Cow position:
               
chr4:3446675-3446301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
129-498
               

               
Cow position:
               
chr4:32658312-32657938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-500
               

               
Cow position:
               
chr4:19025850-19025473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
120, 150
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:6395610-6395991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:7080411-7080792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:17235541-17235912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:29189071-29188690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:30541683-30542064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:38834592-38834211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:42381790-42381409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:42596762-42597144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
23, 315
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:42865529-42865906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 319
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:48411388-48411007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:58748167-58748548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:59838822-59839203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:60579608-60579227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:60677212-60676831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:62221843-62221460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
124, 316
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:63430993-63431374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-505
               

               
Cow position:
               
chr4:64156250-64156631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-531
               

               
Cow position:
               
chr4:10044247-10043835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 316
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr4:4772233-4772645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr4:7584635-7585047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr4:14967601-14968013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr4:18282326-18282738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr4:18599879-18599467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr4:25045534-25045122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr4:41429710-41429298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr4:46021112-46021524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr4:56191643-56191231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-535
               

               
Cow position:
               
chr4:65198279-65197867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-542
               

               
Cow position:
               
chr4:5882997-5883420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-542
               

               
Cow position:
               
chr4:9041469-9041892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 318
               

               
Conread position:
               
129-542
               

               
Cow position:
               
chr4:59383943-59383518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 251
               

               
Conread position:
               
129-547
               

               
Cow position:
               
chr4:17752331-17752759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-547
               

               
Cow position:
               
chr4:36350375-36350803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-554
               

               
Cow position:
               
chr4:24140397-24140843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
129-560
               

               
Cow position:
               
chr4:12560585-12561031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:6150874-6150430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:6231880-6232324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:7138844-7138400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:14047946-14048390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:15618216-15618660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:16765984-16765540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:18672746-18673190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:18684555-18684111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 149
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:21044642-21044198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:28855632-28856076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:29560007-29559563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:44700367-44699923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:45376981-45377425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 316
               

               
Conread position:
               
129-562
               

               
Cow position:
               
chr4:58577145-58576701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-566
               

               
Cow position:
               
chr4:29515503-29515952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-567
               

               
Cow position:
               
chr4:24094404-24093955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:14386753-14386301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:26131680-26132142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
124, 323
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:30474902-30475355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
125, 314
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:31535337-31535790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:33171661-33172115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
124, 248
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:37584346-37583893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:42616706-42617159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 331
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:44663161-44662706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 316
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:45105436-45104984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:46253954-46253501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:47116825-47117276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 61
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:48894095-48894548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-571
               

               
Cow position:
               
chr4:58292252-58292705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
124, 143
               

               
Conread position:
               
129-574
               

               
Cow position:
               
chr4:6547168-6546726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-574
               

               
Cow position:
               
chr4:26538186-26538628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-574
               

               
Cow position:
               
chr4:28456511-28456069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
129-576
               

               
Cow position:
               
chr4:57493765-57493321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 314
               

               
Conread position:
               
130-355
               

               
Cow position:
               
chr4:3421212-3421445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
130-450
               

               
Cow position:
               
chr4:28676647-28676325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
130-504
               

               
Cow position:
               
chr4:25972458-25972836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 224
               

               
Conread position:
               
130-536
               

               
Cow position:
               
chr4:7250002-7249598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
130-547
               

               
Cow position:
               
chr4:54962367-54962794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 313
               

               
Conread position:
               
130-571
               

               
Cow position:
               
chr4:31955980-31955532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 241
               

               
Conread position:
               
131-470
               

               
Cow position:
               
chr4:61721326-61720964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
131-518
               

               
Cow position:
               
chr4:1404606-1404997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
171, 124
               

               
Conread position:
               
131-548
               

               
Cow position:
               
chr4:25806466-25806888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 84
               

               
Conread position:
               
131-574
               

               
Cow position:
               
chr4:25369681-25370129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
132-500
               

               
Cow position:
               
chr4:62772370-62771990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 322
               

               
Conread position:
               
132-505
               

               
Cow position:
               
chr4:46708960-46708585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 146
               

               
Conread position:
               
133-259
               

               
Cow position:
               
chr4:36724554-36724682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
133-262
               

               
Cow position:
               
chr4:39458194-39458324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
133-270
               

               
Cow position:
               
chr4:11309171-11309309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
133-271
               

               
Cow position:
               
chr4:63096800-63096939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
133-274
               

               
Cow position:
               
chr4:43898370-43898230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
119, 56
               

               
Conread position:
               
133-280
               

               
Cow position:
               
chr4:4127199-4127347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
133-287
               

               
Cow position:
               
chr4:51002721-51002875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
133-287
               

               
Cow position:
               
chr4:67408060-67408216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
133-289
               

               
Cow position:
               
chr4:20298801-20298960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
133-289
               

               
Cow position:
               
chr4:27533284-27533120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
133-290
               

               
Cow position:
               
chr4:55522870-55523028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
133-290
               

               
Cow position:
               
chr4:65464528-65464375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
121, 99
               

               
Conread position:
               
133-291
               

               
Cow position:
               
chr4:46549651-46549816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
133-294
               

               
Cow position:
               
chr4:44901791-44901952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
119, 141
               

               
Conread position:
               
133-295
               

               
Cow position:
               
chr4:60030310-60030475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 150
               

               
Conread position:
               
133-296
               

               
Cow position:
               
chr4:12752347-12752510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
133-297
               

               
Cow position:
               
chr4:52086675-52086836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
133-298
               

               
Cow position:
               
chr4:46529462-46529296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
133-298
               

               
Cow position:
               
chr4:48283397-48283569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
133-298
               

               
Cow position:
               
chr4:53822459-53822624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
119, 58
               

               
Conread position:
               
133-298
               

               
Cow position:
               
chr4:54931103-54930939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
133-300
               

               
Cow position:
               
chr4:27287578-27287410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
133-300
               

               
Cow position:
               
chr4:46456504-46456333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
91, 8
               

               
Conread position:
               
133-307
               

               
Cow position:
               
chr4:52177980-52177807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
120, 168
               

               
Conread position:
               
133-308
               

               
Cow position:
               
chr4:3268739-3268563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
129, 158
               

               
Conread position:
               
133-308
               

               
Cow position:
               
chr4:12260484-12260308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
133-308
               

               
Cow position:
               
chr4:33497085-33497261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
133-308
               

               
Cow position:
               
chr4:37691855-37691684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
119, 136
               

               
Conread position:
               
133-308
               

               
Cow position:
               
chr4:40410785-40410611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
123, 56
               

               
Conread position:
               
133-308
               

               
Cow position:
               
chr4:50200946-50201122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
133-309
               

               
Cow position:
               
chr4:61625063-61624879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
133-310
               

               
Cow position:
               
chr4:21233513-21233333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
121, 131
               

               
Conread position:
               
133-310
               

               
Cow position:
               
chr4:22861355-22861174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 151
               

               
Conread position:
               
133-311
               

               
Cow position:
               
chr4:14505768-14505586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 157
               

               
Conread position:
               
133-325
               

               
Cow position:
               
chr4:10333421-10333229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 85
               

               
Conread position:
               
133-325
               

               
Cow position:
               
chr4:35575689-35575882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
133-325
               

               
Cow position:
               
chr4:55657016-55656824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
120, 59
               

               
Conread position:
               
133-328
               

               
Cow position:
               
chr4:8558794-8558603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
121, 35
               

               
Conread position:
               
133-328
               

               
Cow position:
               
chr4:49814446-49814250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
133-339
               

               
Cow position:
               
chr4:12605357-12605157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
133-339
               

               
Cow position:
               
chr4:43381741-43381954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
133-346
               

               
Cow position:
               
chr4:66043850-66043635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
133-354
               

               
Cow position:
               
chr4:56675103-56674879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 127
               

               
Conread position:
               
133-355
               

               
Cow position:
               
chr4:17775023-17774800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
133-355
               

               
Cow position:
               
chr4:44645660-44645442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 124
               

               
Conread position:
               
133-355
               

               
Cow position:
               
chr4:57206129-57206360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
133-355
               

               
Cow position:
               
chr4:68796221-68796452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
133-361
               

               
Cow position:
               
chr4:1355941-1355718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
121, 26
               

               
Conread position:
               
133-367
               

               
Cow position:
               
chr4:7810223-7810461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
133-370
               

               
Cow position:
               
chr4:22366698-22366934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
122, 134
               

               
Conread position:
               
133-373
               

               
Cow position:
               
chr4:23756878-23757119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
119, 149
               

               
Conread position:
               
133-376
               

               
Cow position:
               
chr4:54111131-54111364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
118, 92
               

               
Conread position:
               
133-378
               

               
Cow position:
               
chr4:8760816-8761061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
133-379
               

               
Cow position:
               
chr4:32250018-32250249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
133-380
               

               
Cow position:
               
chr4:3893295-3893545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
133-389
               

               
Cow position:
               
chr4:19502235-19501974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
133-390
               

               
Cow position:
               
chr4:1499572-1499320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
190, 78
               

               
Conread position:
               
133-391
               

               
Cow position:
               
chr4:18539081-18539339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
133-391
               

               
Cow position:
               
chr4:38973881-38974141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
133-393
               

               
Cow position:
               
chr4:41186797-41186537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 144
               

               
Conread position:
               
133-401
               

               
Cow position:
               
chr4:67706383-67706648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
119, 144
               

               
Conread position:
               
133-405
               

               
Cow position:
               
chr4:42328829-42328557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
120, 32
               

               
Conread position:
               
133-405
               

               
Cow position:
               
chr4:47269036-47268764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
120, 137
               

               
Conread position:
               
133-406
               

               
Cow position:
               
chr4:33149411-33149681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
32, 49
               

               
Conread position:
               
133-414
               

               
Cow position:
               
chr4:34223460-34223743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 200
               

               
Conread position:
               
133-415
               

               
Cow position:
               
chr4:66901144-66901436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 144
               

               
Conread position:
               
133-418
               

               
Cow position:
               
chr4:61450337-61450624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
133-419
               

               
Cow position:
               
chr4:54161541-54161254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
120, 271
               

               
Conread position:
               
133-419
               

               
Cow position:
               
chr4:64061504-64061216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
94, 272
               

               
Conread position:
               
133-423
               

               
Cow position:
               
chr4:36070944-36071239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
33, 176
               

               
Conread position:
               
133-424
               

               
Cow position:
               
chr4:54170938-54171228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
133-425
               

               
Cow position:
               
chr4:33020118-33019820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
133-428
               

               
Cow position:
               
chr4:993512-993219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
133-434
               

               
Cow position:
               
chr4:27348756-27349058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
33, 137
               

               
Conread position:
               
133-435
               

               
Cow position:
               
chr4:50194060-50194362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 248
               

               
Conread position:
               
133-437
               

               
Cow position:
               
chr4:49929875-49929576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
133-438
               

               
Cow position:
               
chr4:17375888-17375590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
133-438
               

               
Cow position:
               
chr4:41639844-41640154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
121, 62
               

               
Conread position:
               
133-438
               

               
Cow position:
               
chr4:49668009-49667694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
33, 244
               

               
Conread position:
               
133-439
               

               
Cow position:
               
chr4:53055501-53055198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 150
               

               
Conread position:
               
133-439
               

               
Cow position:
               
chr4:61999883-61999578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 58
               

               
Conread position:
               
133-442
               

               
Cow position:
               
chr4:10613683-10613362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
133-442
               

               
Cow position:
               
chr4:17585456-17585140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
33, 144
               

               
Conread position:
               
133-443
               

               
Cow position:
               
chr4:14131073-14131393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 288
               

               
Conread position:
               
133-443
               

               
Cow position:
               
chr4:30960085-30960396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
40, 149
               

               
Conread position:
               
133-444
               

               
Cow position:
               
chr4:48875052-48874746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
133-445
               

               
Cow position:
               
chr4:5575685-5576011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
33, 194
               

               
Conread position:
               
133-448
               

               
Cow position:
               
chr4:10993975-10993667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 92
               

               
Conread position:
               
133-451
               

               
Cow position:
               
chr4:48205066-48204750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 88
               

               
Conread position:
               
133-457
               

               
Cow position:
               
chr4:5441135-5440806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-459
               

               
Cow position:
               
chr4:17175747-17176067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
133-461
               

               
Cow position:
               
chr4:69017936-69018266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
133-463
               

               
Cow position:
               
chr4:40576344-40576021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 154
               

               
Conread position:
               
133-464
               

               
Cow position:
               
chr4:37169245-37168922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 195
               

               
Conread position:
               
133-465
               

               
Cow position:
               
chr4:48798131-48797806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
120, 77
               

               
Conread position:
               
133-468
               

               
Cow position:
               
chr4:3450556-3450889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
120, 162
               

               
Conread position:
               
133-470
               

               
Cow position:
               
chr4:9445121-9444782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 228
               

               
Conread position:
               
133-471
               

               
Cow position:
               
chr4:61304858-61304513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 140
               

               
Conread position:
               
133-472
               

               
Cow position:
               
chr4:2680950-2681262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
121, 62
               

               
Conread position:
               
133-472
               

               
Cow position:
               
chr4:19255892-19256222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 144
               

               
Conread position:
               
133-476
               

               
Cow position:
               
chr4:11930493-11930838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
120, 59
               

               
Conread position:
               
133-479
               

               
Cow position:
               
chr4:2671695-2671358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 44
               

               
Conread position:
               
133-479
               

               
Cow position:
               
chr4:38799633-38799278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 203
               

               
Conread position:
               
133-481
               

               
Cow position:
               
chr4:17330665-17330310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
120, 314
               

               
Conread position:
               
133-488
               

               
Cow position:
               
chr4:29834147-29834508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
56, 311
               

               
Conread position:
               
133-489
               

               
Cow position:
               
chr4:14230058-14229693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
133-489
               

               
Cow position:
               
chr4:22743907-22744249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 64
               

               
Conread position:
               
133-489
               

               
Cow position:
               
chr4:47264303-47264664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-490
               

               
Cow position:
               
chr4:10024862-10025201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
267, 57
               

               
Conread position:
               
133-491
               

               
Cow position:
               
chr4:64039687-64040027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
133-491
               

               
Cow position:
               
chr4:64072786-64072423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
133-495
               

               
Cow position:
               
chr4:23655563-23655928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 44
               

               
Conread position:
               
133-495
               

               
Cow position:
               
chr4:67600154-67599807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
133-498
               

               
Cow position:
               
chr4:2244428-2244053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
133-498
               

               
Cow position:
               
chr4:14930032-14930409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
50, 31
               

               
Conread position:
               
133-500
               

               
Cow position:
               
chr4:15623404-15623778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 203
               

               
Conread position:
               
133-500
               

               
Cow position:
               
chr4:22138666-22138296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 131
               

               
Conread position:
               
133-500
               

               
Cow position:
               
chr4:38999001-38999362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 142
               

               
Conread position:
               
133-500
               

               
Cow position:
               
chr4:57555527-57555906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 321
               

               
Conread position:
               
133-500
               

               
Cow position:
               
chr4:67444713-67445082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 205
               

               
Conread position:
               
133-502
               

               
Cow position:
               
chr4:66918461-66918847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 328
               

               
Conread position:
               
133-503
               

               
Cow position:
               
chr4:11925529-11925163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
133-503
               

               
Cow position:
               
chr4:20616192-20615816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
20, 198
               

               
Conread position:
               
133-503
               

               
Cow position:
               
chr4:20644151-20644522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 274
               

               
Conread position:
               
133-503
               

               
Cow position:
               
chr4:51903169-51903542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 274
               

               
Conread position:
               
133-503
               

               
Cow position:
               
chr4:53830000-53830375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 257
               

               
Conread position:
               
133-503
               

               
Cow position:
               
chr4:61272067-61271691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
133-504
               

               
Cow position:
               
chr4:3439958-3440344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
133-504
               

               
Cow position:
               
chr4:29529292-29528917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 294
               

               
Conread position:
               
133-504
               

               
Cow position:
               
chr4:34209603-34209970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
133-504
               

               
Cow position:
               
chr4:58834837-58834467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
44, 127
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:20488-20858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 139
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:162606-162982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
120, 170
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:1495822-1495464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:3170844-3171212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
188, 110
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:3475180-3475567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 316
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:5610501-5610131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 149
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:6862679-6862299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
121, 145
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:10034479-10034840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
119, 58
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:10823589-10823964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:14353114-14352731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 214
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:16638018-16637663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 137
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:16642340-16642713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 308
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:17616264-17616640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 312
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:17819231-17818856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:18602689-18602315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 212
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:19584272-19584657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:21553613-21553238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:21602918-21602538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
120, 145
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:22850153-22849780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 260
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:26163403-26163033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:27276975-27276605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 278
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:27337736-27338111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 309
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:27755743-27755360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 166
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:31561715-31561361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
120, 84
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:34172001-34171631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 237
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:35940427-35940066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 129
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:37707629-37707252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:38864577-38864953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 309
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:43147970-43148346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 176
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:43370287-43369912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 66
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:46668153-46668507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 110
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:46711082-46710704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 240
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:52748887-52748518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 76
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:53999952-53999569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 298
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:54339411-54339034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:56852468-56852843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 144
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:58006362-58006733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 27
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:65816130-65815765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 256
               

               
Conread position:
               
133-505
               

               
Cow position:
               
chr4:67392531-67392899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 43
               

               
Conread position:
               
133-506
               

               
Cow position:
               
chr4:9519866-9520243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
133-506
               

               
Cow position:
               
chr4:10553769-10554147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 312
               

               
Conread position:
               
133-506
               

               
Cow position:
               
chr4:20243707-20244077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 103
               

               
Conread position:
               
133-506
               

               
Cow position:
               
chr4:21589038-21588659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 71
               

               
Conread position:
               
133-506
               

               
Cow position:
               
chr4:27997251-27997624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 242
               

               
Conread position:
               
133-506
               

               
Cow position:
               
chr4:30307060-30306682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
120, 145
               

               
Conread position:
               
133-506
               

               
Cow position:
               
chr4:47752813-47753191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
66, 145
               

               
Conread position:
               
133-506
               

               
Cow position:
               
chr4:60124210-60123831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 281
               

               
Conread position:
               
133-507
               

               
Cow position:
               
chr4:23382239-23381868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 142
               

               
Conread position:
               
133-514
               

               
Cow position:
               
chr4:11091112-11090744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 145
               

               
Conread position:
               
133-519
               

               
Cow position:
               
chr4:2190772-2190382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 56
               

               
Conread position:
               
133-519
               

               
Cow position:
               
chr4:56409750-56410143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 200
               

               
Conread position:
               
133-520
               

               
Cow position:
               
chr4:6457211-6456818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
120, 327
               

               
Conread position:
               
133-525
               

               
Cow position:
               
chr4:27178348-27178748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 329
               

               
Conread position:
               
133-526
               

               
Cow position:
               
chr4:16364847-16365248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 329
               

               
Conread position:
               
133-526
               

               
Cow position:
               
chr4:48030383-48030784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 312
               

               
Conread position:
               
133-526
               

               
Cow position:
               
chr4:64875622-64876022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 273
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:359408-359814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 313
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:3354420-3354015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 312
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:4380107-4380497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
194, 102
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:12237723-12237317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 312
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:12589119-12589523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
121, 71
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:19835688-19835289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 145
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:25595962-25595561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 309
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:26874381-26873977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 140
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:33069316-33068912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 160
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:33372244-33371842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:36899901-36900304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:43316130-43315726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 311
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:44734143-44734548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 312
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:49745197-49745588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
133-530
               

               
Cow position:
               
chr4:61242794-61243192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
120, 91
               

               
Conread position:
               
133-533
               

               
Cow position:
               
chr4:22896685-22896270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
120, 182
               

               
Conread position:
               
133-535
               

               
Cow position:
               
chr4:36025745-36025349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 197
               

               
Conread position:
               
133-535
               

               
Cow position:
               
chr4:54757746-54757344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 207
               

               
Conread position:
               
133-536
               

               
Cow position:
               
chr4:6034522-6034115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
133-542
               

               
Cow position:
               
chr4:27546328-27546745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 76
               

               
Conread position:
               
133-542
               

               
Cow position:
               
chr4:34644211-34643791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 171
               

               
Conread position:
               
133-542
               

               
Cow position:
               
chr4:36490119-36489710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
133-542
               

               
Cow position:
               
chr4:38584403-38584824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 245
               

               
Conread position:
               
133-545
               

               
Cow position:
               
chr4:5874522-5874938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 145
               

               
Conread position:
               
133-545
               

               
Cow position:
               
chr4:30574024-30574436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 255
               

               
Conread position:
               
133-546
               

               
Cow position:
               
chr4:637586-637987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
133-547
               

               
Cow position:
               
chr4:120164-119758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
120, 145
               

               
Conread position:
               
133-547
               

               
Cow position:
               
chr4:10122932-10123356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-547
               

               
Cow position:
               
chr4:22073735-22073332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 76
               

               
Conread position:
               
133-547
               

               
Cow position:
               
chr4:48733202-48733623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
120, 169
               

               
Conread position:
               
133-548
               

               
Cow position:
               
chr4:1014638-1015057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 141
               

               
Conread position:
               
133-548
               

               
Cow position:
               
chr4:11918102-11917686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
120, 146
               

               
Conread position:
               
133-548
               

               
Cow position:
               
chr4:15635875-15635459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 227
               

               
Conread position:
               
133-551
               

               
Cow position:
               
chr4:351796-352229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 313
               

               
Conread position:
               
133-551
               

               
Cow position:
               
chr4:9166162-9165738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 143
               

               
Conread position:
               
133-551
               

               
Cow position:
               
chr4:29035486-29035904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 144
               

               
Conread position:
               
133-551
               

               
Cow position:
               
chr4:41097481-41097912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
104, 140
               

               
Conread position:
               
133-552
               

               
Cow position:
               
chr4:16736071-16736494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 60
               

               
Conread position:
               
133-552
               

               
Cow position:
               
chr4:26347518-26347090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-552
               

               
Cow position:
               
chr4:26400525-26400950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 400
               

               
Conread position:
               
133-552
               

               
Cow position:
               
chr4:30690306-30690708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 119
               

               
Conread position:
               
133-552
               

               
Cow position:
               
chr4:30973914-30974330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 49
               

               
Conread position:
               
133-552
               

               
Cow position:
               
chr4:53832619-53833039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 194
               

               
Conread position:
               
133-552
               

               
Cow position:
               
chr4:68362502-68362917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 145
               

               
Conread position:
               
133-557
               

               
Cow position:
               
chr4:25878966-25879396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 83
               

               
Conread position:
               
133-557
               

               
Cow position:
               
chr4:29805818-29805371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
33, 219
               

               
Conread position:
               
133-557
               

               
Cow position:
               
chr4:49794244-49794664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 107
               

               
Conread position:
               
133-558
               

               
Cow position:
               
chr4:28613389-28613821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 311
               

               
Conread position:
               
133-558
               

               
Cow position:
               
chr4:28836098-28836534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
133-560
               

               
Cow position:
               
chr4:30779267-30778828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 313
               

               
Conread position:
               
133-561
               

               
Cow position:
               
chr4:560971-561404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 86
               

               
Conread position:
               
133-561
               

               
Cow position:
               
chr4:8413541-8413122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 82
               

               
Conread position:
               
133-561
               

               
Cow position:
               
chr4:20328145-20327707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 146
               

               
Conread position:
               
133-562
               

               
Cow position:
               
chr4:7429888-7430322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 147
               

               
Conread position:
               
133-562
               

               
Cow position:
               
chr4:22841918-22842345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 161
               

               
Conread position:
               
133-562
               

               
Cow position:
               
chr4:37703834-37704272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 237
               

               
Conread position:
               
133-562
               

               
Cow position:
               
chr4:54190676-54191094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
372, 155
               

               
Conread position:
               
133-562
               

               
Cow position:
               
chr4:56233260-56233686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 137
               

               
Conread position:
               
133-563
               

               
Cow position:
               
chr4:4185689-4186127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 156
               

               
Conread position:
               
133-563
               

               
Cow position:
               
chr4:24372282-24371858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 21
               

               
Conread position:
               
133-566
               

               
Cow position:
               
chr4:17822056-17822499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 309
               

               
Conread position:
               
133-567
               

               
Cow position:
               
chr4:19438013-19438474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 110
               

               
Conread position:
               
133-568
               

               
Cow position:
               
chr4:33971327-33970893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 82
               

               
Conread position:
               
133-568
               

               
Cow position:
               
chr4:36892924-36893369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 144
               

               
Conread position:
               
133-568
               

               
Cow position:
               
chr4:47730439-47730868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 144
               

               
Conread position:
               
133-568
               

               
Cow position:
               
chr4:53134190-53134606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 122
               

               
Conread position:
               
133-569
               

               
Cow position:
               
chr4:285238-285655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
133-569
               

               
Cow position:
               
chr4:4672765-4672328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 161
               

               
Conread position:
               
133-569
               

               
Cow position:
               
chr4:12464416-12464849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 69
               

               
Conread position:
               
133-569
               

               
Cow position:
               
chr4:13271718-13272151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 69
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr4:4319573-4319139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr4:9357933-9358372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
120, 186
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr4:18186874-18186425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr4:18738218-18737769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr4:18975930-18975481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr4:45644743-45644302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 49
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr4:46743722-46743275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr4:48736404-48736853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr4:49176012-49176461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 310
               

               
Conread position:
               
133-571
               

               
Cow position:
               
chr4:63001974-63002413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
120, 143
               

               
Conread position:
               
133-572
               

               
Cow position:
               
chr4:31136322-31136770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
133-574
               

               
Cow position:
               
chr4:6653315-6653741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
133-574
               

               
Cow position:
               
chr4:13589663-13590099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 66
               

               
Conread position:
               
133-574
               

               
Cow position:
               
chr4:20139959-20139499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 44
               

               
Conread position:
               
133-574
               

               
Cow position:
               
chr4:22051900-22051455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 162
               

               
Conread position:
               
133-574
               

               
Cow position:
               
chr4:23853767-23854196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
133-574
               

               
Cow position:
               
chr4:25197929-25197479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 272
               

               
Conread position:
               
133-574
               

               
Cow position:
               
chr4:37553476-37553023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 312
               

               
Conread position:
               
133-574
               

               
Cow position:
               
chr4:59871067-59871495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 162
               

               
Conread position:
               
133-576
               

               
Cow position:
               
chr4:13694100-13693654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 69
               

               
Conread position:
               
133-576
               

               
Cow position:
               
chr4:16799619-16799168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 26
               

               
Conread position:
               
133-576
               

               
Cow position:
               
chr4:19434828-19435273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 285
               

               
Conread position:
               
133-576
               

               
Cow position:
               
chr4:19497679-19497245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 145
               

               
Conread position:
               
133-576
               

               
Cow position:
               
chr4:24002401-24001947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 233
               

               
Conread position:
               
133-576
               

               
Cow position:
               
chr4:48152802-48152353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 312
               

               
Conread position:
               
133-576
               

               
Cow position:
               
chr4:51898571-51899024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 71
               

               
Conread position:
               
133-576
               

               
Cow position:
               
chr4:53100377-53100819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 83
               

               
Conread position:
               
133-576
               

               
Cow position:
               
chr4:66256255-66256704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 104
               

               
Conread position:
               
134-298
               

               
Cow position:
               
chr4:14964320-14964481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
102, 54
               

               
Conread position:
               
134-308
               

               
Cow position:
               
chr4:6792540-6792715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
119, 0
               
UCSC Genome Browser

               
Conread position:
               
134-310
               

               
Cow position:
               
chr4:7806695-7806871 (view  custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
159, 71
               
UCSC Genome Browser

               
               
               
Conread position:
134-313

               
               
               
Cow position:
chr4:8769463-8769644 (view  custom track)

               
               
               
Alignm length:
182

               
               
               
Alignm identity:
128

               
               
               
Alignm E-value:
5e-24

               
               
               
Alignm gaps (pig, cow):
119, 0
UCSC Genome Browser

               
               
               
Conread position:
134-329

               
               
               
Cow position:
chr4:62120535-62120732 (view  custom track)

               
               
               
Alignm length:
198

               
               
               
Alignm identity:
146

               
               
               
Alignm E-value:
1e-33

               
               
               
Alignm gaps (pig, cow):
119, 0

               
               
               Conread position:134-356
               
               
               Cow position:chr4:1027699-1027474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):63, 123

               
               
               Conread position:134-375
               
               
               Cow position:chr4:38706387-38706145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 198

               
               
               Conread position:134-398
               
               
               Cow position:chr4:21943180-21942915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:134-398
               
               
               Cow position:chr4:33628760-33628494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:134-433
               
               
               Cow position:chr4:68470680-68470376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 211

               
               
               Conread position:134-439
               
               
               Cow position:chr4:18099398-18099098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 105

               
               
               Conread position:134-443
               
               
               Cow position:chr4:10871815-10871514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:134-443
               
               
               Cow position:chr4:56226457-56226767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 75

               
               
               Conread position:134-445
               
               
               Cow position:chr4:32838956-32838634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:134-472
               
               
               Cow position:chr4:65179564-65179221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 62

               
               
               Conread position:134-487
               
               
               Cow position:chr4:23568535-23568891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:134-500
               
               
               Cow position:chr4:12697208-12697575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:134-500
               
               
               Cow position:chr4:19558290-19558654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:134-504
               
               
               Cow position:chr4:2609808-2610170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:134-505
               
               
               Cow position:chr4:533815-534185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):12, 120

               
               
               Conread position:134-505
               
               
               Cow position:chr4:607132-607507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):119, 309

               
               
               Conread position:134-505
               
               
               Cow position:chr4:1007416-1007791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):96, 289

               
               
               Conread position:134-505
               
               
               Cow position:chr4:6210262-6210636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):119, 36

               
               
               Conread position:134-505
               
               
               Cow position:chr4:14814095-14814469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 151

               
               
               Conread position:134-505
               
               
               Cow position:chr4:16859195-16858823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 308

               
               
               Conread position:134-505
               
               
               Cow position:chr4:17067573-17067200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):61, 176

               
               
               Conread position:134-505
               
               
               Cow position:chr4:22101695-22101320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 60

               
               
               Conread position:134-505
               
               
               Cow position:chr4:22236906-22236540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 104

               
               
               Conread position:134-505
               
               
               Cow position:chr4:61816877-61816497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):119, 304

               
               
               Conread position:134-507
               
               
               Cow position:chr4:28399834-28399478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:270
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:134-530
               
               
               Cow position:chr4:17282996-17282591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 312

               
               
               Conread position:134-530
               
               
               Cow position:chr4:23303742-23303338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 311

               
               
               Conread position:134-547
               
               
               Cow position:chr4:8439874-8439452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 313

               
               
               Conread position:134-547
               
               
               Cow position:chr4:63195056-63194634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:134-551
               
               
               Cow position:chr4:18974011-18974415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 25

               
               
               Conread position:134-552
               
               
               Cow position:chr4:2253717-2254142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):119, 309

               
               
               Conread position:134-553
               
               
               Cow position:chr4:27540190-27540610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 308

               
               
               Conread position:134-558
               
               
               Cow position:chr4:68233564-68233967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):376, 11

               
               
               Conread position:134-563
               
               
               Cow position:chr4:47020829-47021269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 309

               
               
               Conread position:134-571
               
               
               Cow position:chr4:62014430-62013986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):119, 109

               
               
               Conread position:134-571
               
               
               Cow position:chr4:65919192-65919624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 70

               
               
               Conread position:134-574
               
               
               Cow position:chr4:66548218-66547752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):55, 223

               
               
               Conread position:134-576
               
               
               Cow position:chr4:14470999-14470551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 193

               
               
               Conread position:134-576
               
               
               Cow position:chr4:61897963-61897517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 177

               
               
               Conread position:135-289
               
               
               Cow position:chr4:57146852-57147007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:135-328
               
               
               Cow position:chr4:38811282-38811461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):153, 40

               
               
               Conread position:135-386
               
               
               Cow position:chr4:41999611-41999363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:135-405
               
               
               Cow position:chr4:65972873-65972606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):44, 143

               
               
               Conread position:135-425
               
               
               Cow position:chr4:47047311-47047610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 132

               
               
               Conread position:135-429
               
               
               Cow position:chr4:37312446-37312742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:135-439
               
               
               Cow position:chr4:3132848-3133150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 159

               
               
               Conread position:135-439
               
               
               Cow position:chr4:19420906-19421209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 108

               
               
               Conread position:135-442
               
               
               Cow position:chr4:56177380-56177700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:135-447
               
               
               Cow position:chr4:13877763-13878074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):23, 150

               
               
               Conread position:135-458
               
               
               Cow position:chr4:65842192-65841869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:135-499
               
               
               Cow position:chr4:42672741-42673108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 318

               
               
               Conread position:135-502
               
               
               Cow position:chr4:49213148-49212777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:135-503
               
               
               Cow position:chr4:30220111-30219737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 311

               
               
               Conread position:135-504
               
               
               Cow position:chr4:16340025-16339660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 149

               
               
               Conread position:135-505
               
               
               Cow position:chr4:1237539-1237176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 160

               
               
               Conread position:135-505
               
               
               Cow position:chr4:13327384-13327013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 143

               
               
               Conread position:135-505
               
               
               Cow position:chr4:17500379-17500004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):118, 308

               
               
               Conread position:135-505
               
               
               Cow position:chr4:22086410-22086035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):118, 325

               
               
               Conread position:135-530
               
               
               Cow position:chr4:52601627-52602028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 41

               
               
               Conread position:135-560
               
               
               Cow position:chr4:39231958-39231519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:135-576
               
               
               Cow position:chr4:33433685-33433238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 26

               
               
               Conread position:135-576
               
               
               Cow position:chr4:52017276-52016838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 33

               
               
               Conread position:136-303
               
               
               Cow position:chr4:28711685-28711849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:136-393
               
               
               Cow position:chr4:54184915-54184658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):114, 165

               
               
               Conread position:136-429
               
               
               Cow position:chr4:46359439-46359736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):24, 147

               
               
               Conread position:136-500
               
               
               Cow position:chr4:10731790-10732158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 310

               
               
               Conread position:136-503
               
               
               Cow position:chr4:53545613-53545966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):192, 114

               
               
               Conread position:136-505
               
               
               Cow position:chr4:10397558-10397932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:251
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):117, 307

               
               
               Conread position:136-505
               
               
               Cow position:chr4:34166394-34166037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 141

               
               
               Conread position:136-546
               
               
               Cow position:chr4:54494410-54494810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):42, 135

               
               
               Conread position:136-553
               
               
               Cow position:chr4:66112502-66112077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 47

               
               
               Conread position:137-308
               
               
               Cow position:chr4:8674262-8674430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):118, 72

               
               
               Conread position:137-315
               
               
               Cow position:chr4:2349222-2349043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 175

               
               
               Conread position:137-419
               
               
               Cow position:chr4:4169348-4169631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):116, 267

               
               
               Conread position:137-419
               
               
               Cow position:chr4:43884615-43884896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):116, 39

               
               
               Conread position:137-420
               
               
               Cow position:chr4:38067462-38067739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 106

               
               
               Conread position:137-425
               
               
               Cow position:chr4:68429662-68429946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):117, 78

               
               
               Conread position:137-442
               
               
               Cow position:chr4:61399848-61399553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:137-446
               
               
               Cow position:chr4:35929999-35930312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:137-447
               
               
               Cow position:chr4:12557909-12557605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 52

               
               
               Conread position:137-447
               
               
               Cow position:chr4:12657834-12658139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):116, 52

               
               
               Conread position:137-489
               
               
               Cow position:chr4:57240021-57240378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):116, 306

               
               
               Conread position:137-505
               
               
               Cow position:chr4:2562778-2563150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:137-505
               
               
               Cow position:chr4:8678332-8678706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 307

               
               
               Conread position:137-505
               
               
               Cow position:chr4:19575057-19575415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):116, 265

               
               
               Conread position:137-505
               
               
               Cow position:chr4:54695506-54695135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:137-505
               
               
               Cow position:chr4:55271185-55270818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 142

               
               
               Conread position:137-520
               
               
               Cow position:chr4:62157844-62158230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 22

               
               
               Conread position:137-530
               
               
               Cow position:chr4:43895970-43895569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:271
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):114, 314

               
               
               Conread position:137-530
               
               
               Cow position:chr4:67651907-67651503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):116, 170

               
               
               Conread position:137-533
               
               
               Cow position:chr4:15282929-15283336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):21, 163

               
               
               Conread position:137-533
               
               
               Cow position:chr4:17032971-17032567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 306

               
               
               Conread position:137-536
               
               
               Cow position:chr4:14742840-14743238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 58

               
               
               Conread position:137-568
               
               
               Cow position:chr4:64791460-64791864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 38

               
               
               Conread position:137-576
               
               
               Cow position:chr4:9815778-9815329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 141

               
               
               Conread position:137-576
               
               
               Cow position:chr4:11872341-11871904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 310

               
               
               Conread position:137-576
               
               
               Cow position:chr4:21257554-21257107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 137

               
               
               Conread position:138-308
               
               
               Cow position:chr4:15668722-15668551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 67

               
               
               Conread position:138-431
               
               
               Cow position:chr4:47978538-47978838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 207

               
               
               Conread position:138-447
               
               
               Cow position:chr4:62223880-62224188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:138-505
               
               
               Cow position:chr4:53316506-53316135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):89, 311

               
               
               Conread position:138-530
               
               
               Cow position:chr4:13979571-13979968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 242

               
               
               Conread position:138-541
               
               
               Cow position:chr4:7258853-7258450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 315

               
               
               Conread position:138-548
               
               
               Cow position:chr4:68944603-68944193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 326

               
               
               Conread position:138-574
               
               
               Cow position:chr4:4084881-4084434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 279

               
               
               Conread position:138-576
               
               
               Cow position:chr4:3687498-3687940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 262

               
               
               Conread position:138-576
               
               
               Cow position:chr4:51850772-51851224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 113

               
               
               Conread position:139-500
               
               
               Cow position:chr4:14159556-14159191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 261

               
               
               Conread position:139-505
               
               
               Cow position:chr4:13764363-13763992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 304

               
               
               Conread position:139-505
               
               
               Cow position:chr4:21008703-21008334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):114, 304

               
               
               Conread position:139-505
               
               
               Cow position:chr4:40218351-40218717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 20

               
               
               Conread position:139-505
               
               
               Cow position:chr4:67394774-67395145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):114, 304

               
               
               Conread position:140-405
               
               
               Cow position:chr4:23150126-23149862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):113, 187

               
               
               Conread position:140-482
               
               
               Cow position:chr4:9795791-9795454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 46

               
               
               Conread position:140-488
               
               
               Cow position:chr4:47087516-47087167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:141-568
               
               
               Cow position:chr4:2422157-2422586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:141-571
               
               
               Cow position:chr4:52186593-52187035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 303

               
               
               Conread position:141-574
               
               
               Cow position:chr4:25983814-25984232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 144

               
               
               Conread position:143-386
               
               
               Cow position:chr4:28173336-28173101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):111, 63

               
               
               Conread position:144-308
               
               
               Cow position:chr4:27664482-27664646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 125

               
               
               Conread position:144-319
               
               
               Cow position:chr4:54918500-54918324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:144-505
               
               
               Cow position:chr4:5984465-5984101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:144-530
               
               
               Cow position:chr4:3070404-3070784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:144-552
               
               
               Cow position:chr4:28147693-28147277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):109, 299

               
               
               Conread position:144-571
               
               
               Cow position:chr4:50802169-50802607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):109, 299

               
               
               Conread position:145-506
               
               
               Cow position:chr4:60907714-60907348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 300

               
               
               Conread position:146-310
               
               
               Cow position:chr4:33613069-33612904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:146-379
               
               
               Cow position:chr4:22906619-22906854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):52, 155

               
               
               Conread position:146-506
               
               
               Cow position:chr4:11025780-11025417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):106, 139

               
               
               Conread position:146-535
               
               
               Cow position:chr4:17833324-17832938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 328

               
               
               Conread position:146-574
               
               
               Cow position:chr4:21532048-21531627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 112

               
               
               Conread position:147-444
               
               
               Cow position:chr4:47774049-47773755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 101

               
               
               Conread position:147-505
               
               
               Cow position:chr4:10432323-10432691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 303

               
               
               Conread position:148-384
               
               
               Cow position:chr4:19423028-19423257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):104, 129

               
               
               Conread position:148-505
               
               
               Cow position:chr4:18519304-18519671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 144

               
               
               Conread position:148-576
               
               
               Cow position:chr4:53207891-53208311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 107

               
               
               Conread position:149-396
               
               
               Cow position:chr4:41976086-41975834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:149-505
               
               
               Cow position:chr4:49992671-49993011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 131

               
               
               Conread position:150-505
               
               
               Cow position:chr4:16239552-16239209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:152-568
               
               
               Cow position:chr4:11193772-11194197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:153-541
               
               
               Cow position:chr4:46258069-46258465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 292

               
               
               Conread position:154-298
               
               
               Cow position:chr4:3283882-3283737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:156-298
               
               
               Cow position:chr4:10378848-10378704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:157-462
               
               
               Cow position:chr4:43543142-43542828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 206

               
               
               Conread position:157-571
               
               
               Cow position:chr4:13696117-13695706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:159-290
               
               
               Cow position:chr4:26658489-26658621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:159-345
               
               
               Cow position:chr4:1491265-1491080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:159-389
               
               
               Cow position:chr4:18108383-18108622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):93, 194

               
               
               Conread position:159-557
               
               
               Cow position:chr4:65650527-65650131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 131

               
               
               Conread position:159-574
               
               
               Cow position:chr4:12591615-12591198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 18

               
               
               Conread position:159-576
               
               
               Cow position:chr4:63459621-63459205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 78

               
               
               Conread position:160-398
               
               
               Cow position:chr4:25917890-25917650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:160-489
               
               
               Cow position:chr4:4981569-4981905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:160-500
               
               
               Cow position:chr4:44956607-44956250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):94, 16

               
               
               Conread position:161-327
               
               
               Cow position:chr4:45469216-45469380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:161-411
               
               
               Cow position:chr4:1462884-1463135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 6

               
               
               Conread position:161-505
               
               
               Cow position:chr4:23554848-23555197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:162-540
               
               
               Cow position:chr4:68387392-68387764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:162-548
               
               
               Cow position:chr4:7965051-7964659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:162-574
               
               
               Cow position:chr4:53208836-53209253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 166

               
               
               Conread position:164-371
               
               
               Cow position:chr4:46068902-46069112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):7, 98

               
               
               Conread position:164-425
               
               
               Cow position:chr4:16831990-16831727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:164-505
               
               
               Cow position:chr4:42278634-42278266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:164-535
               
               
               Cow position:chr4:8203034-8202657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 281

               
               
               Conread position:165-335
               
               
               Cow position:chr4:28789550-28789376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:165-425
               
               
               Cow position:chr4:34347437-34347172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:165-432
               
               
               Cow position:chr4:59118551-59118273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:165-481
               
               
               Cow position:chr4:24671577-24671257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:165-498
               
               
               Cow position:chr4:24432247-24432575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:165-500
               
               
               Cow position:chr4:242827-243163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):89, 26

               
               
               Conread position:165-500
               
               
               Cow position:chr4:46274792-46275127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 252

               
               
               Conread position:165-500
               
               
               Cow position:chr4:58857131-58856799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:165-500
               
               
               Cow position:chr4:59333370-59333048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:165-504
               
               
               Cow position:chr4:19306856-19307199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 306

               
               
               Conread position:165-505
               
               
               Cow position:chr4:41301401-41301050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 288

               
               
               Conread position:166-298
               
               
               Cow position:chr4:22547447-22547314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:166-521
               
               
               Cow position:chr4:23573144-23573503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 104

               
               
               Conread position:166-551
               
               
               Cow position:chr4:26175642-26175255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 277

               
               
               Conread position:166-576
               
               
               Cow position:chr4:12903418-12903839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:167-444
               
               
               Cow position:chr4:6822079-6822346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):247, 70

               
               
               Conread position:167-498
               
               
               Cow position:chr4:23567738-23568077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:167-503
               
               
               Cow position:chr4:54501847-54501511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 275

               
               
               Conread position:167-505
               
               
               Cow position:chr4:23558088-23558432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:167-505
               
               
               Cow position:chr4:23565116-23565457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):84, 134

               
               
               Conread position:167-505
               
               
               Cow position:chr4:23570408-23570743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):84, 54

               
               
               Conread position:167-548
               
               
               Cow position:chr4:48784578-48784965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:167-574
               
               
               Cow position:chr4:24458497-24458087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 214

               
               
               Conread position:167-576
               
               
               Cow position:chr4:38934981-38935377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:168-484
               
               
               Cow position:chr4:69405974-69406290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 79

               
               
               Conread position:168-574
               
               
               Cow position:chr4:54540604-54541007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):85, 275

               
               
               Conread position:169-444
               
               
               Cow position:chr4:360510-360793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:169-458
               
               
               Cow position:chr4:42404488-42404208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:169-576
               
               
               Cow position:chr4:21064643-21065054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:170-298
               
               
               Cow position:chr4:49089098-49089227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:170-346
               
               
               Cow position:chr4:11921580-11921403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 73

               
               
               Conread position:170-355
               
               
               Cow position:chr4:44049794-44049974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:170-356
               
               
               Cow position:chr4:21162298-21162487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 177

               
               
               Conread position:170-367
               
               
               Cow position:chr4:9649632-9649832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 153

               
               
               Conread position:170-396
               
               
               Cow position:chr4:38467220-38467447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:170-408
               
               
               Cow position:chr4:28151136-28151378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):84, 95

               
               
               Conread position:170-431
               
               
               Cow position:chr4:25354160-25354426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:170-442
               
               
               Cow position:chr4:5915790-5916067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):119, 101

               
               
               Conread position:170-443
               
               
               Cow position:chr4:31773076-31773355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):84, 159

               
               
               Conread position:170-445
               
               
               Cow position:chr4:5777427-5777153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 226

               
               
               Conread position:170-445
               
               
               Cow position:chr4:63251314-63251038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:170-446
               
               
               Cow position:chr4:19206995-19207272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:170-449
               
               
               Cow position:chr4:38945661-38945933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:170-459
               
               
               Cow position:chr4:61954171-61954456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:170-497
               
               
               Cow position:chr4:46176863-46176527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 280

               
               
               Conread position:170-500
               
               
               Cow position:chr4:36812992-36813307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:170-502
               
               
               Cow position:chr4:50760511-50760188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):83, 119

               
               
               Conread position:170-503
               
               
               Cow position:chr4:28378038-28377723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:170-504
               
               
               Cow position:chr4:23311653-23311318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 8

               
               
               Conread position:170-504
               
               
               Cow position:chr4:45235261-45234928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 276

               
               
               Conread position:170-504
               
               
               Cow position:chr4:62618112-62618460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:170-505
               
               
               Cow position:chr4:41598921-41599263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):83, 277

               
               
               Conread position:170-534
               
               
               Cow position:chr4:39009574-39009937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:170-551
               
               
               Cow position:chr4:11100063-11099675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:170-552
               
               
               Cow position:chr4:21370981-21371384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 245

               
               
               Conread position:170-560
               
               
               Cow position:chr4:32260242-32259843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 205

               
               
               Conread position:171-385
               
               
               Cow position:chr4:1374000-1374212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):83, 117

               
               
               Conread position:171-425
               
               
               Cow position:chr4:37879046-37879307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:171-443
               
               
               Cow position:chr4:48499438-48499719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):83, 173

               
               
               Conread position:171-489
               
               
               Cow position:chr4:8649854-8650164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 59

               
               
               Conread position:171-505
               
               
               Cow position:chr4:23563606-23563943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):151, 79

               
               
               Conread position:171-553
               
               
               Cow position:chr4:17124685-17124298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 215

               
               
               Conread position:172-439
               
               
               Cow position:chr4:9707-9442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 119

               
               
               Conread position:172-500
               
               
               Cow position:chr4:24198186-24197869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 131

               
               
               Conread position:173-329
               
               
               Cow position:chr4:61170121-61169963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):80, 105

               
               
               Conread position:175-362
               
               
               Cow position:chr4:45499935-45499747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:175-452
               
               
               Cow position:chr4:47280515-47280237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 114

               
               
               Conread position:176-443
               
               
               Cow position:chr4:33564483-33564736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:176-450
               
               
               Cow position:chr4:46477327-46477050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:176-495
               
               
               Cow position:chr4:14513625-14513306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:176-498
               
               
               Cow position:chr4:23560986-23561314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:177-352
               
               
               Cow position:chr4:28740638-28740811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:177-444
               
               
               Cow position:chr4:38309523-38309253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 216

               
               
               Conread position:177-458
               
               
               Cow position:chr4:51425483-51425767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:177-506
               
               
               Cow position:chr4:58248024-58248342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:177-506
               
               
               Cow position:chr4:65116600-65116261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):77, 145

               
               
               Conread position:177-536
               
               
               Cow position:chr4:58823308-58822942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):76, 139

               
               
               Conread position:177-576
               
               
               Cow position:chr4:38952171-38952571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 189

               
               
               Conread position:178-320
               
               
               Cow position:chr4:36548230-36548087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:178-390
               
               
               Cow position:chr4:36660115-36659901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:178-443
               
               
               Cow position:chr4:25906712-25906445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:178-505
               
               
               Cow position:chr4:15500889-15500557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 219

               
               
               Conread position:178-505
               
               
               Cow position:chr4:34713383-34713715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 267

               
               
               Conread position:178-561
               
               
               Cow position:chr4:604489-604095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):75, 265

               
               
               Conread position:178-571
               
               
               Cow position:chr4:16000727-16000323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):75, 265

               
               
               Conread position:178-571
               
               
               Cow position:chr4:25865130-25865534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):75, 265

               
               
               Conread position:179-396
               
               
               Cow position:chr4:53128630-53128417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:179-429
               
               
               Cow position:chr4:45994270-45994519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:179-438
               
               
               Cow position:chr4:22391729-22391469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):184, 105

               
               
               Conread position:180-397
               
               
               Cow position:chr4:23892363-23892579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:180-445
               
               
               Cow position:chr4:39273823-39274093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):74, 195

               
               
               Conread position:180-500
               
               
               Cow position:chr4:10992581-10992263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:180-568
               
               
               Cow position:chr4:54146872-54146452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):118, 266

               
               
               Conread position:180-571
               
               
               Cow position:chr4:51859865-51860261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):73, 265

               
               
               Conread position:181-386
               
               
               Cow position:chr4:50026109-50026314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:181-402
               
               
               Cow position:chr4:29132812-29133035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 131

               
               
               Conread position:181-427
               
               
               Cow position:chr4:7559901-7559649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 215

               
               
               Conread position:181-439
               
               
               Cow position:chr4:21985517-21985777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:182-506
               
               
               Cow position:chr4:36840897-36841225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 95

               
               
               Conread position:183-300
               
               
               Cow position:chr4:51866517-51866635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:183-396
               
               
               Cow position:chr4:23866337-23866129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:183-443
               
               
               Cow position:chr4:53701157-53701411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):71, 149

               
               
               Conread position:183-443
               
               
               Cow position:chr4:62953639-62953890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:183-455
               
               
               Cow position:chr4:54607338-54607066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:183-479
               
               
               Cow position:chr4:22073050-22072756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 72

               
               
               Conread position:183-506
               
               
               Cow position:chr4:11919600-11919282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 52

               
               
               Conread position:183-574
               
               
               Cow position:chr4:43866229-43865841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:183-576
               
               
               Cow position:chr4:62471686-62472097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 263

               
               
               Conread position:184-448
               
               
               Cow position:chr4:46492520-46492768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:184-455
               
               
               Cow position:chr4:23494547-23494821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:184-455
               
               
               Cow position:chr4:44665751-44665474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):13, 265

               
               
               Conread position:184-503
               
               
               Cow position:chr4:19237862-19238175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:184-546
               
               
               Cow position:chr4:11901941-11901574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:184-571
               
               
               Cow position:chr4:19534103-19534501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):69, 259

               
               
               Conread position:184-576
               
               
               Cow position:chr4:3388167-3388562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 143

               
               
               Conread position:185-552
               
               
               Cow position:chr4:69343337-69343697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:186-444
               
               
               Cow position:chr4:29710423-29710153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:187-576
               
               
               Cow position:chr4:24744793-24744388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 187

               
               
               Conread position:188-548
               
               
               Cow position:chr4:29813910-29813555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 162

               
               
               Conread position:190-388
               
               
               Cow position:chr4:34314053-34313860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:190-419
               
               
               Cow position:chr4:21873823-21874055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 219

               
               
               Conread position:190-419
               
               
               Cow position:chr4:49559685-49559455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):63, 214

               
               
               Conread position:190-443
               
               
               Cow position:chr4:20090942-20090690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):64, 137

               
               
               Conread position:190-505
               
               
               Cow position:chr4:7873-7550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:190-571
               
               
               Cow position:chr4:21392171-21391797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:190-575
               
               
               Cow position:chr4:19141920-19142293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 65

               
               
               Conread position:191-329
               
               
               Cow position:chr4:24807450-24807310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:191-329
               
               
               Cow position:chr4:68844834-68844974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:191-457
               
               
               Cow position:chr4:1736916-1737183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 155

               
               
               Conread position:191-457
               
               
               Cow position:chr4:1760586-1760319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 155

               
               
               Conread position:191-503
               
               
               Cow position:chr4:12700729-12700404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):46, 291

               
               
               Conread position:191-503
               
               
               Cow position:chr4:43063927-43064244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 256

               
               
               Conread position:191-505
               
               
               Cow position:chr4:15802965-15803284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):62, 252

               
               
               Conread position:191-505
               
               
               Cow position:chr4:47114572-47114888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 68

               
               
               Conread position:191-506
               
               
               Cow position:chr4:54571981-54571660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 255

               
               
               Conread position:191-535
               
               
               Cow position:chr4:15793682-15794033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):46, 253

               
               
               Conread position:191-535
               
               
               Cow position:chr4:46737855-46737505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 252

               
               
               Conread position:191-535
               
               
               Cow position:chr4:63102226-63102576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):62, 252

               
               
               Conread position:191-547
               
               
               Cow position:chr4:13834926-13835292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):62, 252

               
               
               Conread position:191-548
               
               
               Cow position:chr4:60856307-60856672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 252

               
               
               Conread position:191-562
               
               
               Cow position:chr4:32405145-32405527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 252

               
               
               Conread position:191-564
               
               
               Cow position:chr4:33554196-33553811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):62, 252

               
               
               Conread position:191-571
               
               
               Cow position:chr4:62654058-62653667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 252

               
               
               Conread position:191-574
               
               
               Cow position:chr4:43086446-43086067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):62, 252

               
               
               Conread position:192-397
               
               
               Cow position:chr4:54479551-54479350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:192-500
               
               
               Cow position:chr4:8133907-8133603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 168

               
               
               Conread position:192-506
               
               
               Cow position:chr4:52771269-52771587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:192-571
               
               
               Cow position:chr4:11671081-11671465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:193-444
               
               
               Cow position:chr4:55954955-55955204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):57, 163

               
               
               Conread position:193-564
               
               
               Cow position:chr4:59056211-59055859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 169

               
               
               Conread position:194-329
               
               
               Cow position:chr4:5231621-5231758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:194-376
               
               
               Cow position:chr4:64602-64421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):128, 10

               
               
               Conread position:194-439
               
               
               Cow position:chr4:41897085-41896837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 137

               
               
               Conread position:194-448
               
               
               Cow position:chr4:23309294-23309039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 82

               
               
               Conread position:194-489
               
               
               Cow position:chr4:7704680-7704397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):60, 166

               
               
               Conread position:194-505
               
               
               Cow position:chr4:29569187-29568871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):59, 249

               
               
               Conread position:194-505
               
               
               Cow position:chr4:50860430-50860114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 249

               
               
               Conread position:195-353
               
               
               Cow position:chr4:57667789-57667947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:196-429
               
               
               Cow position:chr4:64661679-64661445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):60, 212

               
               
               Conread position:196-443
               
               
               Cow position:chr4:65406724-65406478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:197-529
               
               
               Cow position:chr4:63266430-63266766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):56, 248

               
               
               Conread position:198-505
               
               
               Cow position:chr4:59781327-59781637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):55, 245

               
               
               Conread position:198-560
               
               
               Cow position:chr4:1915942-1915576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:199-530
               
               
               Cow position:chr4:17919152-17918814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:199-551
               
               
               Cow position:chr4:3990988-3990637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 129

               
               
               Conread position:199-562
               
               
               Cow position:chr4:46059107-46058760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:199-571
               
               
               Cow position:chr4:480373-479995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 245

               
               
               Conread position:199-571
               
               
               Cow position:chr4:56479627-56480010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):54, 244

               
               
               Conread position:200-445
               
               
               Cow position:chr4:51289351-51289603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):127, 54

               
               
               Conread position:203-505
               
               
               Cow position:chr4:42232307-42232598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:204-328
               
               
               Cow position:chr4:14816276-14816401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:204-332
               
               
               Cow position:chr4:6459926-6459797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:204-341
               
               
               Cow position:chr4:22631941-22631802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:204-386
               
               
               Cow position:chr4:20581389-20581210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:204-402
               
               
               Cow position:chr4:68066937-68067139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:204-427
               
               
               Cow position:chr4:20117208-20116990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:204-438
               
               
               Cow position:chr4:11225838-11225599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 145

               
               
               Conread position:204-439
               
               
               Cow position:chr4:34074274-34074031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 182

               
               
               Conread position:204-443
               
               
               Cow position:chr4:57988318-57988563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:204-446
               
               
               Cow position:chr4:41833623-41833382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:204-472
               
               
               Cow position:chr4:26469284-26469553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:204-500
               
               
               Cow position:chr4:65168366-65168071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 86

               
               
               Conread position:204-504
               
               
               Cow position:chr4:18489753-18489446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:204-505
               
               
               Cow position:chr4:40664060-40663754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):49, 239

               
               
               Conread position:204-514
               
               
               Cow position:chr4:58283458-58283147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:204-571
               
               
               Cow position:chr4:12426905-12426527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):49, 239

               
               
               Conread position:204-574
               
               
               Cow position:chr4:4085490-4085102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:204-574
               
               
               Cow position:chr4:22528742-22528367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:204-576
               
               
               Cow position:chr4:8947037-8947414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 175

               
               
               Conread position:204-576
               
               
               Cow position:chr4:17112239-17111855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 239

               
               
               Conread position:205-505
               
               
               Cow position:chr4:61215357-61215057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:205-548
               
               
               Cow position:chr4:19313645-19314001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:205-574
               
               
               Cow position:chr4:40414991-40414612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 172

               
               
               Conread position:206-450
               
               
               Cow position:chr4:42498174-42498422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):121, 238

               
               
               Conread position:206-500
               
               
               Cow position:chr4:45918674-45918970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:206-505
               
               
               Cow position:chr4:14944681-14944999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:206-548
               
               
               Cow position:chr4:47056666-47057016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 237

               
               
               Conread position:207-439
               
               
               Cow position:chr4:22089461-22089699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:207-442
               
               
               Cow position:chr4:49001659-49001418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:208-542
               
               
               Cow position:chr4:33935363-33935699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 237

               
               
               Conread position:208-547
               
               
               Cow position:chr4:13668970-13668634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:208-547
               
               
               Cow position:chr4:15862701-15862352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):45, 235

               
               
               Conread position:208-547
               
               
               Cow position:chr4:34996817-34997166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):45, 235

               
               
               Conread position:210-506
               
               
               Cow position:chr4:21844718-21845024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):43, 198

               
               
               Conread position:212-505
               
               
               Cow position:chr4:47502108-47502406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 248

               
               
               Conread position:215-350
               
               
               Cow position:chr4:6413588-6413454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:215-505
               
               
               Cow position:chr4:11187109-11187392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:215-541
               
               
               Cow position:chr4:65193136-65193480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 244

               
               
               Conread position:215-571
               
               
               Cow position:chr4:45375035-45375404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 230

               
               
               Conread position:216-552
               
               
               Cow position:chr4:48137565-48137905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:217-505
               
               
               Cow position:chr4:44782026-44782313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 170

               
               
               Conread position:217-506
               
               
               Cow position:chr4:45573-45861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:217-561
               
               
               Cow position:chr4:31023098-31023455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:218-367
               
               
               Cow position:chr4:17186866-17186718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):103, 75

               
               
               Conread position:218-503
               
               
               Cow position:chr4:10905803-10905527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:218-505
               
               
               Cow position:chr4:4277506-4277214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 237

               
               
               Conread position:218-505
               
               
               Cow position:chr4:44030016-44029728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):35, 132

               
               
               Conread position:218-530
               
               
               Cow position:chr4:23318923-23318605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):35, 226

               
               
               Conread position:218-530
               
               
               Cow position:chr4:49204014-49203707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):188, 118

               
               
               Conread position:218-548
               
               
               Cow position:chr4:19265226-19265564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 249

               
               
               Conread position:218-562
               
               
               Cow position:chr4:22216003-22215649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:219-420
               
               
               Cow position:chr4:26704517-26704310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:219-428
               
               
               Cow position:chr4:49908247-49908038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:219-429
               
               
               Cow position:chr4:1535463-1535679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:219-439
               
               
               Cow position:chr4:44635177-44635403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:219-445
               
               
               Cow position:chr4:30814731-30814958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:219-458
               
               
               Cow position:chr4:62673921-62674167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:219-500
               
               
               Cow position:chr4:53763461-53763188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:219-505
               
               
               Cow position:chr4:65731273-65730979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:219-574
               
               
               Cow position:chr4:54455670-54455326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:219-575
               
               
               Cow position:chr4:48485647-48486011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 234

               
               
               Conread position:219-576
               
               
               Cow position:chr4:42424146-42423787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 29

               
               
               Conread position:220-472
               
               
               Cow position:chr4:13038750-13038504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:221-505
               
               
               Cow position:chr4:60897617-60897336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 141

               
               
               Conread position:221-566
               
               
               Cow position:chr4:18106119-18105766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:222-500
               
               
               Cow position:chr4:45239934-45240207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:224-481
               
               
               Cow position:chr4:49068090-49068362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:224-504
               
               
               Cow position:chr4:63365715-63365437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:224-505
               
               
               Cow position:chr4:68764176-68764461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):30, 133

               
               
               Conread position:225-391
               
               
               Cow position:chr4:23553561-23553728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:225-458
               
               
               Cow position:chr4:6166667-6166437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:225-551
               
               
               Cow position:chr4:46383711-46383378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:225-560
               
               
               Cow position:chr4:68076868-68076531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 136

               
               
               Conread position:225-571
               
               
               Cow position:chr4:62950862-62951218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:226-576
               
               
               Cow position:chr4:56240185-56239842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 183

               
               
               Conread position:228-424
               
               
               Cow position:chr4:47530703-47530503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:228-503
               
               
               Cow position:chr4:60433200-60432919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):26, 218

               
               
               Conread position:228-505
               
               
               Cow position:chr4:44496049-44496310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:228-505
               
               
               Cow position:chr4:45589924-45589661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:228-505
               
               
               Cow position:chr4:66211877-66211595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 215

               
               
               Conread position:228-542
               
               
               Cow position:chr4:29811907-29811587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):25, 218

               
               
               Conread position:228-551
               
               
               Cow position:chr4:1060599-1060277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):27, 145

               
               
               Conread position:228-551
               
               
               Cow position:chr4:47351470-47351795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:229-471
               
               
               Cow position:chr4:21246899-21246657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:229-505
               
               
               Cow position:chr4:10412045-10412315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 63

               
               
               Conread position:230-571
               
               
               Cow position:chr4:275131-275476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:231-503
               
               
               Cow position:chr4:58512911-58512622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:231-505
               
               
               Cow position:chr4:49629149-49629420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):23, 168

               
               
               Conread position:232-437
               
               
               Cow position:chr4:5577823-5577614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:232-533
               
               
               Cow position:chr4:51023362-51023069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:233-472
               
               
               Cow position:chr4:4736705-4736938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:233-487
               
               
               Cow position:chr4:27590167-27589915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:233-570
               
               
               Cow position:chr4:509230-508900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 156

               
               
               Conread position:233-571
               
               
               Cow position:chr4:26908795-26908447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:233-576
               
               
               Cow position:chr4:22010390-22010037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:234-576
               
               
               Cow position:chr4:37915661-37915318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 85

               
               
               Conread position:235-526
               
               
               Cow position:chr4:39006628-39006927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):18, 210

               
               
               Conread position:235-548
               
               
               Cow position:chr4:570466-570781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 151

               
               
               Conread position:235-571
               
               
               Cow position:chr4:50808165-50808512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 208

               
               
               Conread position:236-432
               
               
               Cow position:chr4:52979699-52979498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:236-495
               
               
               Cow position:chr4:34208599-34208865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:236-564
               
               
               Cow position:chr4:13371610-13371958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 221

               
               
               Conread position:236-571
               
               
               Cow position:chr4:6265336-6264990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:237-394
               
               
               Cow position:chr4:33420456-33420301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:237-505
               
               
               Cow position:chr4:20666709-20666982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 206

               
               
               Conread position:237-505
               
               
               Cow position:chr4:21064329-21064065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:237-505
               
               
               Cow position:chr4:57584554-57584304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:238-505
               
               
               Cow position:chr4:23610623-23610895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):15, 207

               
               
               Conread position:238-505
               
               
               Cow position:chr4:37181231-37180959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 205

               
               
               Conread position:239-404
               
               
               Cow position:chr4:623708-623543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 100

               
               
               Conread position:239-454
               
               
               Cow position:chr4:488763-488547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:239-496
               
               
               Cow position:chr4:45936244-45936484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:239-505
               
               
               Cow position:chr4:14334134-14333863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):14, 204

               
               
               Conread position:239-575
               
               
               Cow position:chr4:12048922-12049264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:241-390
               
               
               Cow position:chr4:48104733-48104886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:241-505
               
               
               Cow position:chr4:47826089-47825819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):5, 203

               
               
               Conread position:242-505
               
               
               Cow position:chr4:16008882-16008614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):11, 201

               
               
               Conread position:243-505
               
               
               Cow position:chr4:19561373-19561624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 68

               
               
               Conread position:244-574
               
               
               Cow position:chr4:45775662-45775322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 164

               
               
               Conread position:245-400
               
               
               Cow position:chr4:48212793-48212639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:245-504
               
               
               Cow position:chr4:59833615-59833884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 108

               
               
               Conread position:245-505
               
               
               Cow position:chr4:33593303-33593568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):8, 198

               
               
               Conread position:245-505
               
               
               Cow position:chr4:37935601-37935344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 168

               
               
               Conread position:245-551
               
               
               Cow position:chr4:16860036-16859738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:245-562
               
               
               Cow position:chr4:19597634-19597320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:246-505
               
               
               Cow position:chr4:6677414-6677678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):7, 197

               
               
               Conread position:246-505
               
               
               Cow position:chr4:43476187-43475930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:246-506
               
               
               Cow position:chr4:38330527-38330261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):7, 161

               
               
               Conread position:246-535
               
               
               Cow position:chr4:20272060-20272355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 197

               
               
               Conread position:246-561
               
               
               Cow position:chr4:48961807-48961482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:249-450
               
               
               Cow position:chr4:62159414-62159211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:250-504
               
               
               Cow position:chr4:51408277-51408034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:250-505
               
               
               Cow position:chr4:60371146-60370888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:250-558
               
               
               Cow position:chr4:17660517-17660189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:250-560
               
               
               Cow position:chr4:66381562-66381243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):77, 195

               
               
               Conread position:251-379
               
               
               Cow position:chr4:46435135-46435264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:251-465
               
               
               Cow position:chr4:17200967-17201170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:251-498
               
               
               Cow position:chr4:54804724-54804494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):188, 50

               
               
               Conread position:251-500
               
               
               Cow position:chr4:32827432-32827190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:251-500
               
               
               Cow position:chr4:45738792-45738544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:251-518
               
               
               Cow position:chr4:56514248-56513985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:251-548
               
               
               Cow position:chr4:23060319-23060007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:251-553
               
               
               Cow position:chr4:19007727-19008040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:251-571
               
               
               Cow position:chr4:23599860-23600180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:252-505
               
               
               Cow position:chr4:42267051-42266812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:252-506
               
               
               Cow position:chr4:69305344-69305591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:252-535
               
               
               Cow position:chr4:40229715-40230003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):69, 190

               
               
               Conread position:253-364
               
               
               Cow position:chr4:19308171-19308282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:254-503
               
               
               Cow position:chr4:47315031-47314799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):73, 54

               
               
               Conread position:254-504
               
               
               Cow position:chr4:33421671-33421420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 233

               
               
               Conread position:254-548
               
               
               Cow position:chr4:12033957-12034255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:255-505
               
               
               Cow position:chr4:35319496-35319242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 187

               
               
               Conread position:255-505
               
               
               Cow position:chr4:57245922-57245668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 187

               
               
               Conread position:258-571
               
               
               Cow position:chr4:21609251-21608928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 184

               
               
               Conread position:258-574
               
               
               Cow position:chr4:28173105-28172790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:259-505
               
               
               Cow position:chr4:4487840-4488090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):62, 183

               
               
               Conread position:259-506
               
               
               Cow position:chr4:21022334-21022097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:259-551
               
               
               Cow position:chr4:62317133-62317433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 187

               
               
               Conread position:260-448
               
               
               Cow position:chr4:19742271-19742086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:260-506
               
               
               Cow position:chr4:11309322-11309568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):63, 182

               
               
               Conread position:260-560
               
               
               Cow position:chr4:49424540-49424827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:261-503
               
               
               Cow position:chr4:53752214-53752460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):183, 44

               
               
               Conread position:261-504
               
               
               Cow position:chr4:26373971-26373720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:262-515
               
               
               Cow position:chr4:49159075-49158833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:262-547
               
               
               Cow position:chr4:23451398-23451107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 149

               
               
               Conread position:262-574
               
               
               Cow position:chr4:45662802-45662495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 120

               
               
               Conread position:263-439
               
               
               Cow position:chr4:52584683-52584505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:263-500
               
               
               Cow position:chr4:37342814-37343050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):15, 156

               
               
               Conread position:263-571
               
               
               Cow position:chr4:9876015-9875697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 179

               
               
               Conread position:265-505
               
               
               Cow position:chr4:2893726-2893967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:265-505
               
               
               Cow position:chr4:12654005-12653763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 176

               
               
               Conread position:265-506
               
               
               Cow position:chr4:48182416-48182660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:265-506
               
               
               Cow position:chr4:66554331-66554088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):134, 73

               
               
               Conread position:266-423
               
               
               Cow position:chr4:58424684-58424528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:266-495
               
               
               Cow position:chr4:29114332-29114101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):67, 178

               
               
               Conread position:266-505
               
               
               Cow position:chr4:18095971-18095730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 11

               
               
               Conread position:267-558
               
               
               Cow position:chr4:10703982-10703691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 200

               
               
               Conread position:268-472
               
               
               Cow position:chr4:33910010-33910208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:268-505
               
               
               Cow position:chr4:14414640-14414404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:268-505
               
               
               Cow position:chr4:51830541-51830783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 194

               
               
               Conread position:269-416
               
               
               Cow position:chr4:21006606-21006751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:269-554
               
               
               Cow position:chr4:49002708-49003002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 173

               
               
               Conread position:269-571
               
               
               Cow position:chr4:15848040-15848347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 173

               
               
               Conread position:269-574
               
               
               Cow position:chr4:19724052-19723738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 174

               
               
               Conread position:270-504
               
               
               Cow position:chr4:27510977-27511202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 126

               
               
               Conread position:271-574
               
               
               Cow position:chr4:55652082-55651769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 175

               
               
               Conread position:272-447
               
               
               Cow position:chr4:40056675-40056854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):49, 172

               
               
               Conread position:272-505
               
               
               Cow position:chr4:1925443-1925205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 171

               
               
               Conread position:273-503
               
               
               Cow position:chr4:45511265-45511031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 171

               
               
               Conread position:273-571
               
               
               Cow position:chr4:19582907-19582602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 108

               
               
               Conread position:274-500
               
               
               Cow position:chr4:36730900-36731129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 171

               
               
               Conread position:274-551
               
               
               Cow position:chr4:12030549-12030832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 85

               
               
               Conread position:274-574
               
               
               Cow position:chr4:51727793-51728093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 80

               
               
               Conread position:275-505
               
               
               Cow position:chr4:54975014-54975238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:275-547
               
               
               Cow position:chr4:54937597-54937880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):48, 155

               
               
               Conread position:276-506
               
               
               Cow position:chr4:7081986-7081761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 121

               
               
               Conread position:277-503
               
               
               Cow position:chr4:39128244-39128472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:277-505
               
               
               Cow position:chr4:54468583-54468352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 191

               
               
               Conread position:277-535
               
               
               Cow position:chr4:40678424-40678687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 165

               
               
               Conread position:277-552
               
               
               Cow position:chr4:56570516-56570799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):27, 143

               
               
               Conread position:278-494
               
               
               Cow position:chr4:41223939-41224158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:280-445
               
               
               Cow position:chr4:41469319-41469154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):114, 146

               
               
               Conread position:280-493
               
               
               Cow position:chr4:620436-620222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:282-444
               
               
               Cow position:chr4:26000573-26000409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:282-558
               
               
               Cow position:chr4:3340670-3340952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:282-576
               
               
               Cow position:chr4:7571127-7571431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 158

               
               
               Conread position:284-493
               
               
               Cow position:chr4:7847547-7847337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:284-495
               
               
               Cow position:chr4:50203467-50203684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:284-505
               
               
               Cow position:chr4:17052876-17052661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:284-552
               
               
               Cow position:chr4:4321286-4321009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 255

               
               
               Conread position:286-576
               
               
               Cow position:chr4:46550106-46550398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):37, 159

               
               
               Conread position:287-505
               
               
               Cow position:chr4:51866710-51866935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):8, 141

               
               
               Conread position:287-506
               
               
               Cow position:chr4:10968661-10968448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:288-505
               
               
               Cow position:chr4:29237426-29237218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:288-574
               
               
               Cow position:chr4:8801227-8801524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:289-442
               
               
               Cow position:chr4:3274809-3274655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 119

               
               
               Conread position:289-450
               
               
               Cow position:chr4:24187894-24187727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:289-458
               
               
               Cow position:chr4:46385853-46385679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:143
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:289-503
               
               
               Cow position:chr4:24415010-24415224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):38, 156

               
               
               Conread position:289-503
               
               
               Cow position:chr4:49741273-49741482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 123

               
               
               Conread position:289-503
               
               
               Cow position:chr4:51122782-51122993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:289-504
               
               
               Cow position:chr4:9845649-9845856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):156, 30

               
               
               Conread position:289-505
               
               
               Cow position:chr4:25359330-25359550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):55, 48

               
               
               Conread position:289-552
               
               
               Cow position:chr4:5999469-5999197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):39, 158

               
               
               Conread position:289-552
               
               
               Cow position:chr4:52167118-52166858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 37

               
               
               Conread position:289-556
               
               
               Cow position:chr4:6792167-6792436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):151, 103

               
               
               Conread position:289-569
               
               
               Cow position:chr4:59785041-59785330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 154

               
               
               Conread position:289-574
               
               
               Cow position:chr4:5461128-5460845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):227, 38

               
               
               Conread position:289-574
               
               
               Cow position:chr4:39455779-39456055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:290-445
               
               
               Cow position:chr4:13920374-13920217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 152

               
               
               Conread position:290-452
               
               
               Cow position:chr4:28789394-28789231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:290-472
               
               
               Cow position:chr4:6630565-6630383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:290-483
               
               
               Cow position:chr4:3251810-3251614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):37, 151

               
               
               Conread position:290-503
               
               
               Cow position:chr4:46083170-46082953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 158

               
               
               Conread position:290-504
               
               
               Cow position:chr4:63349750-63349536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 70

               
               
               Conread position:290-505
               
               
               Cow position:chr4:5850606-5850388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 191

               
               
               Conread position:290-505
               
               
               Cow position:chr4:11021925-11021714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:290-505
               
               
               Cow position:chr4:19542520-19542736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:290-505
               
               
               Cow position:chr4:44025089-44024880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:290-505
               
               
               Cow position:chr4:44612729-44612944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:290-505
               
               
               Cow position:chr4:54930690-54930480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:290-506
               
               
               Cow position:chr4:44073044-44072825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 155

               
               
               Conread position:290-506
               
               
               Cow position:chr4:45114880-45114664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:290-506
               
               
               Cow position:chr4:62570541-62570759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 146

               
               
               Conread position:290-545
               
               
               Cow position:chr4:32748923-32749191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:290-552
               
               
               Cow position:chr4:22345289-22345028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:290-560
               
               
               Cow position:chr4:51739977-51739707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:290-560
               
               
               Cow position:chr4:59106085-59105825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):37, 156

               
               
               Conread position:290-561
               
               
               Cow position:chr4:36755475-36755747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:290-563
               
               
               Cow position:chr4:1405266-1405536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:290-574
               
               
               Cow position:chr4:46456321-46456049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):216, 51

               
               
               Conread position:290-575
               
               
               Cow position:chr4:28772341-28772050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 137

               
               
               Conread position:290-576
               
               
               Cow position:chr4:27529839-27530136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 156

               
               
               Conread position:291-443
               
               
               Cow position:chr4:49885575-49885423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:291-444
               
               
               Cow position:chr4:11175818-11175974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:291-530
               
               
               Cow position:chr4:33498128-33498371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):115, 6

               
               
               Conread position:291-552
               
               
               Cow position:chr4:41186175-41185917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:292-450
               
               
               Cow position:chr4:61969910-61969748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 154

               
               
               Conread position:292-454
               
               
               Cow position:chr4:67042691-67042857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:292-487
               
               
               Cow position:chr4:52632241-52632043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 10

               
               
               Conread position:292-498
               
               
               Cow position:chr4:58261425-58261221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):108, 151

               
               
               Conread position:292-498
               
               
               Cow position:chr4:62567133-62567344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 155

               
               
               Conread position:292-504
               
               
               Cow position:chr4:46060674-46060883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:292-506
               
               
               Cow position:chr4:55671155-55671370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 69

               
               
               Conread position:292-562
               
               
               Cow position:chr4:33395960-33395694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):217, 34

               
               
               Conread position:292-562
               
               
               Cow position:chr4:47348560-47348833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:292-576
               
               
               Cow position:chr4:34337534-34337251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):103, 32

               
               
               Conread position:293-487
               
               
               Cow position:chr4:51014847-51015029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:293-500
               
               
               Cow position:chr4:21365143-21365341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):155, 42

               
               
               Conread position:293-504
               
               
               Cow position:chr4:68795575-68795357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 9

               
               
               Conread position:293-505
               
               
               Cow position:chr4:23509318-23509533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:293-506
               
               
               Cow position:chr4:203419-203201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):29, 153

               
               
               Conread position:293-558
               
               
               Cow position:chr4:26746213-26746481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:293-575
               
               
               Cow position:chr4:20298998-20299292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 145

               
               
               Conread position:293-575
               
               
               Cow position:chr4:41867173-41867460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 148

               
               
               Conread position:294-408
               
               
               Cow position:chr4:22547069-22546955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:294-453
               
               
               Cow position:chr4:19577793-19577954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 150

               
               
               Conread position:294-545
               
               
               Cow position:chr4:33623448-33623699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 195

               
               
               Conread position:294-554
               
               
               Cow position:chr4:2141476-2141745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 146

               
               
               Conread position:295-442
               
               
               Cow position:chr4:22354670-22354826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:295-505
               
               
               Cow position:chr4:31004672-31004467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:295-515
               
               
               Cow position:chr4:52225740-52225961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 150

               
               
               Conread position:295-549
               
               
               Cow position:chr4:63119500-63119250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:296-505
               
               
               Cow position:chr4:43495634-43495842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):192, 144

               
               
               Conread position:296-552
               
               
               Cow position:chr4:46591394-46591660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:296-560
               
               
               Cow position:chr4:29291254-29291518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:297-504
               
               
               Cow position:chr4:54667958-54667749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:297-507
               
               
               Cow position:chr4:62411607-62411821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:298-470
               
               
               Cow position:chr4:15462539-15462370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:298-500
               
               
               Cow position:chr4:23066034-23065833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 135

               
               
               Conread position:298-505
               
               
               Cow position:chr4:34630636-34630833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:298-505
               
               
               Cow position:chr4:43895069-43894871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:298-506
               
               
               Cow position:chr4:8769844-8770047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):145, 76

               
               
               Conread position:298-561
               
               
               Cow position:chr4:19744623-19744891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:298-571
               
               
               Cow position:chr4:23847317-23847036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 146

               
               
               Conread position:298-576
               
               
               Cow position:chr4:19699833-19700116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):29, 151

               
               
               Conread position:299-518
               
               
               Cow position:chr4:48235374-48235597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 174

               
               
               Conread position:299-557
               
               
               Cow position:chr4:33612628-33612360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):31, 146

               
               
               Conread position:299-558
               
               
               Cow position:chr4:27664740-27665005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:299-571
               
               
               Cow position:chr4:34641994-34641713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 132

               
               
               Conread position:299-574
               
               
               Cow position:chr4:27561131-27561403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:299-575
               
               
               Cow position:chr4:35981724-35982013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 146

               
               
               Conread position:301-505
               
               
               Cow position:chr4:26307763-26307559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):21, 79

               
               
               Conread position:301-505
               
               
               Cow position:chr4:43909489-43909683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:301-576
               
               
               Cow position:chr4:62983816-62983535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):56, 65

               
               
               Conread position:302-459
               
               
               Cow position:chr4:455032-455194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:302-482
               
               
               Cow position:chr4:10471961-10472140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:148
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:302-504
               
               
               Cow position:chr4:22249705-22249511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 25

               
               
               Conread position:302-504
               
               
               Cow position:chr4:31172404-31172614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):28, 169

               
               
               Conread position:302-504
               
               
               Cow position:chr4:40823377-40823177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 139

               
               
               Conread position:302-505
               
               
               Cow position:chr4:23445313-23445109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):138, 48

               
               
               Conread position:302-505
               
               
               Cow position:chr4:31348456-31348249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 155

               
               
               Conread position:302-505
               
               
               Cow position:chr4:55395506-55395701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:302-547
               
               
               Cow position:chr4:47289808-47290066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:302-550
               
               
               Cow position:chr4:36396386-36396137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):102, 39

               
               
               Conread position:302-552
               
               
               Cow position:chr4:19316259-19316012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):202, 25

               
               
               Conread position:302-563
               
               
               Cow position:chr4:37691570-37691309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:302-568
               
               
               Cow position:chr4:5797705-5797976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 144

               
               
               Conread position:302-574
               
               
               Cow position:chr4:32725962-32726240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:303-505
               
               
               Cow position:chr4:46597122-46597318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):136, 75

               
               
               Conread position:303-548
               
               
               Cow position:chr4:34310716-34310464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 143

               
               
               Conread position:303-552
               
               
               Cow position:chr4:123462-123216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 139

               
               
               Conread position:303-576
               
               
               Cow position:chr4:63096336-63096056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:304-428
               
               
               Cow position:chr4:18755925-18756050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:304-439
               
               
               Cow position:chr4:61066392-61066525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):8, 91

               
               
               Conread position:304-469
               
               
               Cow position:chr4:52177400-52177230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:304-498
               
               
               Cow position:chr4:13141472-13141277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 13

               
               
               Conread position:304-500
               
               
               Cow position:chr4:21258960-21259151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):142, 21

               
               
               Conread position:304-505
               
               
               Cow position:chr4:657079-656874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:305-457
               
               
               Cow position:chr4:51630398-51630555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:305-463
               
               
               Cow position:chr4:42103837-42103995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):134, 146

               
               
               Conread position:305-491
               
               
               Cow position:chr4:2536574-2536757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):22, 31

               
               
               Conread position:305-504
               
               
               Cow position:chr4:18439832-18439629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:305-574
               
               
               Cow position:chr4:13255836-13256102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:306-436
               
               
               Cow position:chr4:6149188-6149055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:306-505
               
               
               Cow position:chr4:12260040-12259841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:307-503
               
               
               Cow position:chr4:59008626-59008433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:307-505
               
               
               Cow position:chr4:45367479-45367676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:307-571
               
               
               Cow position:chr4:33357674-33357949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:307-574
               
               
               Cow position:chr4:45583385-45583103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 228

               
               
               Conread position:307-576
               
               
               Cow position:chr4:58881223-58880943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):92, 137

               
               
               Conread position:308-568
               
               
               Cow position:chr4:62921113-62920857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:308-575
               
               
               Cow position:chr4:63965247-63964971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:308-576
               
               
               Cow position:chr4:42922102-42921839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:309-535
               
               
               Cow position:chr4:40410375-40410152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 106

               
               
               Conread position:310-481
               
               
               Cow position:chr4:19708687-19708860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:310-505
               
               
               Cow position:chr4:12676559-12676745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:310-505
               
               
               Cow position:chr4:20157667-20157477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:310-505
               
               
               Cow position:chr4:41292234-41292042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:310-551
               
               
               Cow position:chr4:5630007-5629759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:310-552
               
               
               Cow position:chr4:49089540-49089784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:310-558
               
               
               Cow position:chr4:24688603-24688347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):13, 252

               
               
               Conread position:311-505
               
               
               Cow position:chr4:11004968-11004780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:312-574
               
               
               Cow position:chr4:19322331-19322062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:313-498
               
               
               Cow position:chr4:43762790-43762984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:313-558
               
               
               Cow position:chr4:7808327-7808576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 136

               
               
               Conread position:313-563
               
               
               Cow position:chr4:18577028-18576765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:314-505
               
               
               Cow position:chr4:53447916-53447728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:316-475
               
               
               Cow position:chr4:3268583-3268423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 128

               
               
               Conread position:317-548
               
               
               Cow position:chr4:13043024-13043252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):127, 105

               
               
               Conread position:317-576
               
               
               Cow position:chr4:21233118-21232856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:320-455
               
               
               Cow position:chr4:52177408-52177544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:320-468
               
               
               Cow position:chr4:45724374-45724516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:320-552
               
               
               Cow position:chr4:65431902-65432143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:320-574
               
               
               Cow position:chr4:20502411-20502656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):197, 63

               
               
               Conread position:320-576
               
               
               Cow position:chr4:36290364-36290642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:321-464
               
               
               Cow position:chr4:33062668-33062813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 123

               
               
               Conread position:321-495
               
               
               Cow position:chr4:37502579-37502751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):119, 74

               
               
               Conread position:321-500
               
               
               Cow position:chr4:65538650-65538482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:321-504
               
               
               Cow position:chr4:46370568-46370754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):74, 124

               
               
               Conread position:321-505
               
               
               Cow position:chr4:16091642-16091459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 121

               
               
               Conread position:321-505
               
               
               Cow position:chr4:49813909-49813729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 142

               
               
               Conread position:321-552
               
               
               Cow position:chr4:11897541-11897302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):102, 83

               
               
               Conread position:322-562
               
               
               Cow position:chr4:26659064-26659303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):190, 43

               
               
               Conread position:323-552
               
               
               Cow position:chr4:12127883-12127646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:325-500
               
               
               Cow position:chr4:13871691-13871853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:326-500
               
               
               Cow position:chr4:3820185-3820358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:326-505
               
               
               Cow position:chr4:23911826-23911643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:326-505
               
               
               Cow position:chr4:43295929-43295754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):153, 69

               
               
               Conread position:326-576
               
               
               Cow position:chr4:25356543-25356300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):74, 102

               
               
               Conread position:327-505
               
               
               Cow position:chr4:63813538-63813371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 68

               
               
               Conread position:328-568
               
               
               Cow position:chr4:19463255-19463506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:329-505
               
               
               Cow position:chr4:2601995-2602172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 114

               
               
               Conread position:329-571
               
               
               Cow position:chr4:41908026-41907788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 111

               
               
               Conread position:331-492
               
               
               Cow position:chr4:8704752-8704913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:331-505
               
               
               Cow position:chr4:43750044-43749868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:331-551
               
               
               Cow position:chr4:37344665-37344436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 122

               
               
               Conread position:331-562
               
               
               Cow position:chr4:56435573-56435808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:332-574
               
               
               Cow position:chr4:46501123-46501360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):100, 78

               
               
               Conread position:333-505
               
               
               Cow position:chr4:13222406-13222243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:333-574
               
               
               Cow position:chr4:41602618-41602865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:334-505
               
               
               Cow position:chr4:22860935-22860773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:335-506
               
               
               Cow position:chr4:44902215-44902377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:335-558
               
               
               Cow position:chr4:56590802-56591040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 234

               
               
               Conread position:337-505
               
               
               Cow position:chr4:10999930-10999767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 22

               
               
               Conread position:337-551
               
               
               Cow position:chr4:63860107-63859895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):167, 56

               
               
               Conread position:338-557
               
               
               Cow position:chr4:37465809-37465597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):168, 25

               
               
               Conread position:338-571
               
               
               Cow position:chr4:24810672-24810436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:339-505
               
               
               Cow position:chr4:44973418-44973577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:340-552
               
               
               Cow position:chr4:27687700-27687920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):168, 106

               
               
               Conread position:341-506
               
               
               Cow position:chr4:16762954-16762788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 125

               
               
               Conread position:341-566
               
               
               Cow position:chr4:51083584-51083365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 115

               
               
               Conread position:343-558
               
               
               Cow position:chr4:59277700-59277479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 101

               
               
               Conread position:347-483
               
               
               Cow position:chr4:13608022-13608162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 99

               
               
               Conread position:348-505
               
               
               Cow position:chr4:36724827-36724978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:348-552
               
               
               Cow position:chr4:34924908-34924697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:349-499
               
               
               Cow position:chr4:43740307-43740458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:350-506
               
               
               Cow position:chr4:31506243-31506091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:351-571
               
               
               Cow position:chr4:13941246-13941473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:352-497
               
               
               Cow position:chr4:48321817-48321958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:352-558
               
               
               Cow position:chr4:2885750-2885548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:353-498
               
               
               Cow position:chr4:66118737-66118590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:356-498
               
               
               Cow position:chr4:16593876-16594013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:358-500
               
               
               Cow position:chr4:51768907-51769046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:358-551
               
               
               Cow position:chr4:30791759-30791962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 145

               
               
               Conread position:358-574
               
               
               Cow position:chr4:1354819-1354609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:358-574
               
               
               Cow position:chr4:38944470-38944240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):42, 174

               
               
               Conread position:359-574
               
               
               Cow position:chr4:28543805-28543596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):196, 82

               
               
               Conread position:360-506
               
               
               Cow position:chr4:36929110-36929258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:360-551
               
               
               Cow position:chr4:2099431-2099620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:361-570
               
               
               Cow position:chr4:29106697-29106911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):45, 171

               
               
               Conread position:361-574
               
               
               Cow position:chr4:13344339-13344554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 85

               
               
               Conread position:362-574
               
               
               Cow position:chr4:11331888-11332109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:364-505
               
               
               Cow position:chr4:13974171-13974029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:364-548
               
               
               Cow position:chr4:29238242-29238055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:364-558
               
               
               Cow position:chr4:28839426-28839621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:365-495
               
               
               Cow position:chr4:43515524-43515656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:365-574
               
               
               Cow position:chr4:19408198-19407981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):42, 51

               
               
               Conread position:366-576
               
               
               Cow position:chr4:3689511-3689722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:366-576
               
               
               Cow position:chr4:17774547-17774332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:375-542
               
               
               Cow position:chr4:46552508-46552340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):142, 64

               
               
               Conread position:375-576
               
               
               Cow position:chr4:10378922-10379128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:377-505
               
               
               Cow position:chr4:45574819-45574944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:377-560
               
               
               Cow position:chr4:33869474-33869657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:380-575
               
               
               Cow position:chr4:17186536-17186333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 67

               
               
               Conread position:385-505
               
               
               Cow position:chr4:61148415-61148535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:385-575
               
               
               Cow position:chr4:34022765-34022568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):120, 56

               
               
               Conread position:386-493
               
               
               Cow position:chr4:38887314-38887208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:386-560
               
               
               Cow position:chr4:32459043-32458861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 176

               
               
               Conread position:388-558
               
               
               Cow position:chr4:54851295-54851120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):121, 148

               
               
               Conread position:390-574
               
               
               Cow position:chr4:16881536-16881349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):115, 48

               
               
               Conread position:395-571
               
               
               Cow position:chr4:54479072-54478905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):160, 45

               
               
               Conread position:396-560
               
               
               Cow position:chr4:59377746-59377911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:413-576
               
               
               Cow position:chr4:47047743-47047913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:416-574
               
               
               Cow position:chr4:36577777-36577614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):90, 25

               
               
               Conread position:427-576
               
               
               Cow position:chr4:25537409-25537565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 14
Show alignments to all cow chromosomes.