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Cow genome map

           
Conread name:
           
Ss1.1-rret34_c10.5
        

               
Conread position:
               
493-697
               

               
Cow position:
               
chr1:68827231-68827030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
165, 72
               

               
Conread position:
               
513-708
               

               
Cow position:
               
chr1:84812244-84812046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
514-708
               

               
Cow position:
               
chr1:96478388-96478579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 42
               

               
Conread position:
               
523-744
               

               
Cow position:
               
chr1:46821714-46821938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
532-708
               

               
Cow position:
               
chr1:37646289-37646118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
536-708
               

               
Cow position:
               
chr1:29462570-29462739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
164, 18
               

               
Conread position:
               
537-708
               

               
Cow position:
               
chr1:39069235-39069068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
548-708
               

               
Cow position:
               
chr1:6103187-6103026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
549-708
               

               
Cow position:
               
chr1:99118112-99118276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
48, 97
               

               
Conread position:
               
555-708
               

               
Cow position:
               
chr1:42887532-42887378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
555-708
               

               
Cow position:
               
chr1:95215453-95215295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 91
               

               
Conread position:
               
556-706
               

               
Cow position:
               
chr1:68854909-68855055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
556-708
               

               
Cow position:
               
chr1:46218317-46218468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 88
               

               
Conread position:
               
556-708
               

               
Cow position:
               
chr1:50765091-50765246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
556-708
               

               
Cow position:
               
chr1:53520639-53520794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
556-708
               

               
Cow position:
               
chr1:81563469-81563623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
556-708
               

               
Cow position:
               
chr1:85865520-85865670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
556-708
               

               
Cow position:
               
chr1:88029018-88029172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
557-741
               

               
Cow position:
               
chr1:94378767-94378954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 88
               

               
Conread position:
               
558-706
               

               
Cow position:
               
chr1:39702570-39702709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
558-708
               

               
Cow position:
               
chr1:13056792-13056642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
97, 85
               

               
Conread position:
               
558-708
               

               
Cow position:
               
chr1:71938776-71938625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
559-708
               

               
Cow position:
               
chr1:46693919-46693766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
559-708
               

               
Cow position:
               
chr1:55229721-55229871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
559-708
               

               
Cow position:
               
chr1:79165355-79165199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
559-708
               

               
Cow position:
               
chr1:98562897-98563050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
559-711
               

               
Cow position:
               
chr1:72035192-72035036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 66
               

               
Conread position:
               
560-702
               

               
Cow position:
               
chr1:80899846-80899992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
98, 83
               

               
Conread position:
               
560-703
               

               
Cow position:
               
chr1:84226639-84226494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
560-707
               

               
Cow position:
               
chr1:11020773-11020921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
560-708
               

               
Cow position:
               
chr1:24561713-24561566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
98, 83
               

               
Conread position:
               
560-708
               

               
Cow position:
               
chr1:42555008-42555149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
560-708
               

               
Cow position:
               
chr1:49181792-49181945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
560-708
               

               
Cow position:
               
chr1:61392053-61391902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 71
               

               
Conread position:
               
560-708
               

               
Cow position:
               
chr1:64160080-64160224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
560-708
               

               
Cow position:
               
chr1:71045493-71045641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
98, 83
               

               
Conread position:
               
560-708
               

               
Cow position:
               
chr1:81579501-81579653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
35, 84
               

               
Conread position:
               
560-708
               

               
Cow position:
               
chr1:82338047-82337894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
560-720
               

               
Cow position:
               
chr1:41252665-41252500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
560-720
               

               
Cow position:
               
chr1:70380408-70380245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
560-720
               

               
Cow position:
               
chr1:75967174-75967332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
561-708
               

               
Cow position:
               
chr1:24133316-24133171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
121, 82
               

               
Conread position:
               
561-708
               

               
Cow position:
               
chr1:53595064-53595208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
561-708
               

               
Cow position:
               
chr1:54294925-54294770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
561-709
               

               
Cow position:
               
chr1:10778313-10778454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 81
               

               
Conread position:
               
562-708
               

               
Cow position:
               
chr1:3757692-3757840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
562-708
               

               
Cow position:
               
chr1:45289133-45288986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
562-718
               

               
Cow position:
               
chr1:39249055-39248898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
35, 84
               

               
Conread position:
               
563-676
               

               
Cow position:
               
chr1:100816283-100816395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
563-701
               

               
Cow position:
               
chr1:68217619-68217479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
563-706
               

               
Cow position:
               
chr1:77657807-77657952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
88, 80
               

               
Conread position:
               
563-706
               

               
Cow position:
               
chr1:78689674-78689821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:1956588-1956441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:24655701-24655848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:25793699-25793548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:41004626-41004476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:52994765-52994914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
95, 80
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:54199639-54199497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:55135577-55135720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:61175924-61176073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:92370618-92370471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:95017772-95017632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
563-708
               

               
Cow position:
               
chr1:99105141-99104997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
563-713
               

               
Cow position:
               
chr1:88970804-88970950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
563-720
               

               
Cow position:
               
chr1:6321950-6322108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
563-729
               

               
Cow position:
               
chr1:3752202-3752035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
563-744
               

               
Cow position:
               
chr1:24528857-24528685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
563-744
               

               
Cow position:
               
chr1:39427240-39427056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
95, 80
               

               
Conread position:
               
564-697
               

               
Cow position:
               
chr1:52496518-52496657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
565-706
               

               
Cow position:
               
chr1:62964022-62964163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
565-707
               

               
Cow position:
               
chr1:96559085-96559227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 78
               

               
Conread position:
               
565-708
               

               
Cow position:
               
chr1:11853947-11853799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
565-708
               

               
Cow position:
               
chr1:26159688-26159541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
565-708
               

               
Cow position:
               
chr1:31765652-31765506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
565-708
               

               
Cow position:
               
chr1:35170080-35170224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
93, 77
               

               
Conread position:
               
565-708
               

               
Cow position:
               
chr1:54207073-54206932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
565-708
               

               
Cow position:
               
chr1:61564534-61564683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
565-708
               

               
Cow position:
               
chr1:69695266-69695116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
565-708
               

               
Cow position:
               
chr1:81355960-81355819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
93, 78
               

               
Conread position:
               
565-708
               

               
Cow position:
               
chr1:90640768-90640915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 78
               

               
Conread position:
               
565-708
               

               
Cow position:
               
chr1:91800865-91800715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 83
               

               
Conread position:
               
565-713
               

               
Cow position:
               
chr1:30034289-30034430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
565-720
               

               
Cow position:
               
chr1:69539442-69539598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 63
               

               
Conread position:
               
565-720
               

               
Cow position:
               
chr1:71797157-71797007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
565-744
               

               
Cow position:
               
chr1:22823680-22823849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
566-706
               

               
Cow position:
               
chr1:634935-635076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
567-708
               

               
Cow position:
               
chr1:40062193-40062339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
567-716
               

               
Cow position:
               
chr1:74822196-74822352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
567-744
               

               
Cow position:
               
chr1:82880410-82880590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
568-702
               

               
Cow position:
               
chr1:11873609-11873479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
568-708
               

               
Cow position:
               
chr1:5409869-5409728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
568-708
               

               
Cow position:
               
chr1:15547215-15547355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 75
               

               
Conread position:
               
568-708
               

               
Cow position:
               
chr1:42053579-42053443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
568-708
               

               
Cow position:
               
chr1:45020057-45019920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
568-708
               

               
Cow position:
               
chr1:57305578-57305719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
569-686
               

               
Cow position:
               
chr1:69445119-69445239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
569-687
               

               
Cow position:
               
chr1:732178-732059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
569-687
               

               
Cow position:
               
chr1:38278298-38278180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 76
               

               
Conread position:
               
569-697
               

               
Cow position:
               
chr1:13413774-13413906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 77
               

               
Conread position:
               
569-701
               

               
Cow position:
               
chr1:95637289-95637423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
569-702
               

               
Cow position:
               
chr1:666107-666240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 75
               

               
Conread position:
               
569-703
               

               
Cow position:
               
chr1:26934790-26934655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
569-705
               

               
Cow position:
               
chr1:41138607-41138469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
569-706
               

               
Cow position:
               
chr1:8369-8506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
27, 75
               

               
Conread position:
               
569-706
               

               
Cow position:
               
chr1:4374591-4374456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 76
               

               
Conread position:
               
569-706
               

               
Cow position:
               
chr1:5873224-5873087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 76
               

               
Conread position:
               
569-706
               

               
Cow position:
               
chr1:47008774-47008916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
569-706
               

               
Cow position:
               
chr1:52510496-52510358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
569-706
               

               
Cow position:
               
chr1:53207948-53207808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 75
               

               
Conread position:
               
569-706
               

               
Cow position:
               
chr1:68253338-68253476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-706
               

               
Cow position:
               
chr1:76470406-76470537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-706
               

               
Cow position:
               
chr1:91066401-91066268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
569-707
               

               
Cow position:
               
chr1:12222858-12222719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
569-707
               

               
Cow position:
               
chr1:24201992-24201862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
569-707
               

               
Cow position:
               
chr1:33997165-33997022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-707
               

               
Cow position:
               
chr1:34685942-34686080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
569-707
               

               
Cow position:
               
chr1:61735692-61735549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
569-707
               

               
Cow position:
               
chr1:81290265-81290400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
569-707
               

               
Cow position:
               
chr1:81859480-81859341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:1801891-1802026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
92, 33
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:1877774-1877915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:2317892-2317751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:3872598-3872738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:4026932-4027074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 48
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:4032381-4032512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:9437802-9437662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:12596154-12596017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 59
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:13614972-13614829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 70
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:20384874-20384733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:22628892-22628752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:26688731-26688588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:29627168-29627025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 119
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:33716968-33717112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:34300801-34300663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:39418371-39418235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:40599799-40599930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:43380282-43380141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:45007213-45007356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:52039384-52039523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:52435017-52435157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 77
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:52564045-52563909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:52774774-52774634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 77
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:53308645-53308503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:53374182-53374317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:53622712-53622846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:54258314-54258450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:54484815-54484956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 74
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:55686472-55686330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:56229001-56229138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:56719060-56719207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:57541754-57541614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:57698709-57698563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 77
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:57957111-57956971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 77
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:58889548-58889410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:61304428-61304568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:61350894-61351038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:61725366-61725222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 78
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:63311310-63311446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:64678444-64678588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:67014131-67014272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 110
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:69264569-69264702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:71748260-71748120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:72286302-72286170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:72813162-72813298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:73584655-73584516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:76222944-76222804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:78091779-78091919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:78783293-78783433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:79590847-79590991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:79663919-79663775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:80183992-80183850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:80336503-80336356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:81228584-81228453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:81913405-81913261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:82504714-82504860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:82861520-82861665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 76
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:82884638-82884503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:83184997-83185138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:83982630-83982486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:84786518-84786661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
85, 74
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:85783273-85783412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
88, 73
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:91817027-91816883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:92437244-92437104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:95499748-95499606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
85, 73
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:96019019-96019151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:96964066-96964206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
21, 76
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:97422550-97422410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:97620093-97619950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:99095110-99095248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 104
               

               
Conread position:
               
569-708
               

               
Cow position:
               
chr1:99609113-99609254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
569-709
               

               
Cow position:
               
chr1:6939892-6939750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
569-709
               

               
Cow position:
               
chr1:41056431-41056571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
569-713
               

               
Cow position:
               
chr1:55260683-55260538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
85, 74
               

               
Conread position:
               
569-714
               

               
Cow position:
               
chr1:42360013-42360165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-717
               

               
Cow position:
               
chr1:86113666-86113513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
569-718
               

               
Cow position:
               
chr1:83725-83873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 38
               

               
Conread position:
               
569-718
               

               
Cow position:
               
chr1:1053335-1053483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
569-718
               

               
Cow position:
               
chr1:34000652-34000806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
569-719
               

               
Cow position:
               
chr1:41735878-41735723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
569-719
               

               
Cow position:
               
chr1:90864553-90864398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
569-720
               

               
Cow position:
               
chr1:19516659-19516503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
569-720
               

               
Cow position:
               
chr1:36613528-36613374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
569-720
               

               
Cow position:
               
chr1:42874200-42874046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
569-720
               

               
Cow position:
               
chr1:61149786-61149636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
569-720
               

               
Cow position:
               
chr1:67821463-67821310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
569-720
               

               
Cow position:
               
chr1:68818049-68817898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
569-720
               

               
Cow position:
               
chr1:71946623-71946474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
139, 72
               

               
Conread position:
               
569-720
               

               
Cow position:
               
chr1:88652378-88652531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
86, 74
               

               
Conread position:
               
569-720
               

               
Cow position:
               
chr1:90868689-90868540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
569-720
               

               
Cow position:
               
chr1:93499369-93499527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
569-721
               

               
Cow position:
               
chr1:34856882-34856736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-721
               

               
Cow position:
               
chr1:48105687-48105532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
569-723
               

               
Cow position:
               
chr1:89834982-89835132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
569-728
               

               
Cow position:
               
chr1:71325500-71325344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 75
               

               
Conread position:
               
569-736
               

               
Cow position:
               
chr1:91051920-91051748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
570-706
               

               
Cow position:
               
chr1:31358458-31358318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
570-707
               

               
Cow position:
               
chr1:31348160-31348031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
570-707
               

               
Cow position:
               
chr1:36931907-36932043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
570-708
               

               
Cow position:
               
chr1:1981362-1981227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
570-708
               

               
Cow position:
               
chr1:68619189-68619047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
570-708
               

               
Cow position:
               
chr1:97611905-97611766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 76
               

               
Conread position:
               
570-720
               

               
Cow position:
               
chr1:49839254-49839406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
570-720
               

               
Cow position:
               
chr1:55146549-55146703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
571-705
               

               
Cow position:
               
chr1:22730510-22730639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
571-708
               

               
Cow position:
               
chr1:16767335-16767194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
571-708
               

               
Cow position:
               
chr1:32631219-32631352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
87, 19
               

               
Conread position:
               
571-708
               

               
Cow position:
               
chr1:42138614-42138753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
571-708
               

               
Cow position:
               
chr1:42968567-42968427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
571-708
               

               
Cow position:
               
chr1:50679537-50679399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
571-715
               

               
Cow position:
               
chr1:98397466-98397323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 72
               

               
Conread position:
               
571-718
               

               
Cow position:
               
chr1:78030734-78030585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
571-723
               

               
Cow position:
               
chr1:20204775-20204927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
572-696
               

               
Cow position:
               
chr1:43822127-43822252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
572-697
               

               
Cow position:
               
chr1:33081274-33081148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
572-699
               

               
Cow position:
               
chr1:37726625-37726498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-700
               

               
Cow position:
               
chr1:57639770-57639638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
572-705
               

               
Cow position:
               
chr1:3776864-3776731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
572-705
               

               
Cow position:
               
chr1:56711868-56711736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
572-706
               

               
Cow position:
               
chr1:6760267-6760137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
572-706
               

               
Cow position:
               
chr1:57637122-57637257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
572-707
               

               
Cow position:
               
chr1:28176750-28176889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 69
               

               
Conread position:
               
572-707
               

               
Cow position:
               
chr1:40292214-40292076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
86, 26
               

               
Conread position:
               
572-707
               

               
Cow position:
               
chr1:50931219-50931090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
572-707
               

               
Cow position:
               
chr1:55163672-55163811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-707
               

               
Cow position:
               
chr1:60707153-60707292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
572-707
               

               
Cow position:
               
chr1:69941218-69941082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
572-707
               

               
Cow position:
               
chr1:85774209-85774346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 119
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:1916486-1916348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:6941216-6941352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:6958629-6958765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:11226495-11226355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 74
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:11770543-11770404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:21092841-21092979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:21787076-21787217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:21835698-21835832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 70
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:22728797-22728938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:22826919-22827054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:23634150-23634018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:23905745-23905886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:37322256-37322115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:37707219-37707077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:43505273-43505411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:43893678-43893813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:45535452-45535592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:46940112-46939972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:50634656-50634515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:51980977-51981118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:52506794-52506668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:54478072-54478211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:56657791-56657922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:60032848-60032712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:63391022-63390887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 26
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:68276157-68276297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:68845730-68845599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:71135903-71136039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
86, 63
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:72141314-72141447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:74084439-74084310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:75744610-75744747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:77620300-77620438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:79002204-79002074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:80869856-80870002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:81180230-81180089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:81363744-81363870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:81613135-81613276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:84116152-84116284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:85162797-85162657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:85361605-85361746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:88338447-88338586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:89395341-89395483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:94226798-94226664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:95071736-95071872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 69
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:95327403-95327262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 70
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:98708192-98708327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:100537560-100537703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:101634451-101634591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-708
               

               
Cow position:
               
chr1:102647519-102647386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
572-709
               

               
Cow position:
               
chr1:7731475-7731613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
572-713
               

               
Cow position:
               
chr1:91142404-91142263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
572-713
               

               
Cow position:
               
chr1:96713064-96712922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
572-718
               

               
Cow position:
               
chr1:33719864-33720013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
73, 142
               

               
Conread position:
               
572-718
               

               
Cow position:
               
chr1:49131372-49131220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
572-720
               

               
Cow position:
               
chr1:3456622-3456771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
572-720
               

               
Cow position:
               
chr1:19998285-19998135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
86, 69
               

               
Conread position:
               
572-720
               

               
Cow position:
               
chr1:57900991-57900838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
572-720
               

               
Cow position:
               
chr1:99136680-99136532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 32
               

               
Conread position:
               
572-720
               

               
Cow position:
               
chr1:100800107-100800257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
82, 37
               

               
Conread position:
               
572-721
               

               
Cow position:
               
chr1:26896075-26895926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
572-721
               

               
Cow position:
               
chr1:100421593-100421734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
572-743
               

               
Cow position:
               
chr1:89937613-89937435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
572-744
               

               
Cow position:
               
chr1:27358693-27358869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
573-705
               

               
Cow position:
               
chr1:36874765-36874898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
573-708
               

               
Cow position:
               
chr1:874394-874532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
573-708
               

               
Cow position:
               
chr1:52329778-52329645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 71
               

               
Conread position:
               
573-708
               

               
Cow position:
               
chr1:88618343-88618482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
573-708
               

               
Cow position:
               
chr1:98594322-98594454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 70
               

               
Conread position:
               
573-716
               

               
Cow position:
               
chr1:5135941-5135797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
7, 71
               

               
Conread position:
               
574-708
               

               
Cow position:
               
chr1:3244602-3244740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
574-708
               

               
Cow position:
               
chr1:25383414-25383549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
575-686
               

               
Cow position:
               
chr1:73756846-73756958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
575-687
               

               
Cow position:
               
chr1:48444429-48444314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 73
               

               
Conread position:
               
575-690
               

               
Cow position:
               
chr1:87888155-87888275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
575-691
               

               
Cow position:
               
chr1:57635220-57635335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 68
               

               
Conread position:
               
575-691
               

               
Cow position:
               
chr1:89510179-89510059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
575-695
               

               
Cow position:
               
chr1:91370723-91370603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
575-696
               

               
Cow position:
               
chr1:19145165-19145046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
79, 105
               

               
Conread position:
               
575-697
               

               
Cow position:
               
chr1:85338881-85339007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 68
               

               
Conread position:
               
575-702
               

               
Cow position:
               
chr1:24235765-24235636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
575-702
               

               
Cow position:
               
chr1:31499380-31499505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
575-702
               

               
Cow position:
               
chr1:63596307-63596175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
575-702
               

               
Cow position:
               
chr1:74013514-74013382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
575-706
               

               
Cow position:
               
chr1:61884668-61884804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
575-706
               

               
Cow position:
               
chr1:66430054-66430185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
575-706
               

               
Cow position:
               
chr1:70534181-70534049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
575-707
               

               
Cow position:
               
chr1:5162300-5162164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
575-707
               

               
Cow position:
               
chr1:22448831-22448701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
575-707
               

               
Cow position:
               
chr1:52415206-52415068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
575-707
               

               
Cow position:
               
chr1:95765336-95765199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:1185492-1185627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:3076638-3076510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:3340690-3340828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:4027614-4027752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:4619116-4618978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:7350291-7350429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:12871254-12871123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:15311621-15311756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:21954465-21954331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:22467683-22467817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:23969284-23969152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:25183878-25184018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:29671771-29671633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:30882562-30882430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:31414205-31414074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 73
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:31934266-31934398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:33811687-33811816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:35844177-35844044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:44136709-44136579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:47233722-47233592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:51968223-51968348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:52753413-52753279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:56477348-56477477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:57264233-57264109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:61005813-61005675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:66355955-66355826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:67916789-67916921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:71691567-71691705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:72012050-72011923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:72803486-72803343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:73561896-73561763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 9
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:78794982-78794848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:78857569-78857434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 68
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:79844222-79844353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 68
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:84255507-84255645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:92963151-92963285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:94211987-94212120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
83, 68
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:97806545-97806675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:98380824-98380687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 119
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:98741434-98741568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:101547289-101547152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:101551210-101551348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
575-708
               

               
Cow position:
               
chr1:101713869-101714008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
575-709
               

               
Cow position:
               
chr1:52488205-52488075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
575-717
               

               
Cow position:
               
chr1:3137686-3137823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
575-720
               

               
Cow position:
               
chr1:7022212-7022358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
83, 68
               

               
Conread position:
               
575-720
               

               
Cow position:
               
chr1:29935628-29935479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
82, 68
               

               
Conread position:
               
575-720
               

               
Cow position:
               
chr1:61724272-61724130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
575-720
               

               
Cow position:
               
chr1:70538356-70538508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
575-720
               

               
Cow position:
               
chr1:95176688-95176840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
575-721
               

               
Cow position:
               
chr1:10116043-10115893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 140
               

               
Conread position:
               
575-723
               

               
Cow position:
               
chr1:3323611-3323765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
575-729
               

               
Cow position:
               
chr1:100132621-100132774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
575-740
               

               
Cow position:
               
chr1:55020242-55020401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
135, 24
               

               
Conread position:
               
575-741
               

               
Cow position:
               
chr1:58439293-58439128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
575-744
               

               
Cow position:
               
chr1:24571136-24570968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 68
               

               
Conread position:
               
575-744
               

               
Cow position:
               
chr1:65103388-65103565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
576-681
               

               
Cow position:
               
chr1:36920879-36920773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
576-695
               

               
Cow position:
               
chr1:29451628-29451750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
576-704
               

               
Cow position:
               
chr1:101792345-101792215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
576-706
               

               
Cow position:
               
chr1:71253801-71253668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 64
               

               
Conread position:
               
576-707
               

               
Cow position:
               
chr1:1165354-1165491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:3661302-3661167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:6240370-6240495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:11772327-11772190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:11914123-11913991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 70
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:18937080-18936943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:44769356-44769226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:51531527-51531652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
24, 68
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:56225231-56225353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:56748344-56748480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:63905720-63905585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:87216215-87216348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:95035600-95035468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 22
               

               
Conread position:
               
576-708
               

               
Cow position:
               
chr1:102826059-102825929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 67
               

               
Conread position:
               
576-710
               

               
Cow position:
               
chr1:35162158-35162296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 67
               

               
Conread position:
               
576-718
               

               
Cow position:
               
chr1:61283780-61283933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
82, 67
               

               
Conread position:
               
576-741
               

               
Cow position:
               
chr1:37887033-37886867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
576-741
               

               
Cow position:
               
chr1:41093116-41092950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
82, 66
               

               
Conread position:
               
577-704
               

               
Cow position:
               
chr1:98023640-98023511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
577-707
               

               
Cow position:
               
chr1:32955009-32954879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 66
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:7583478-7583610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:8659403-8659538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:34159587-34159721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
81, 66
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:57981795-57981660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:61742213-61742081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
22, 70
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:64251294-64251165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:68282549-68282688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:71119266-71119399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:71666423-71666287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:84239352-84239226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
577-708
               

               
Cow position:
               
chr1:84240655-84240779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
577-718
               

               
Cow position:
               
chr1:51628747-51628601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
577-718
               

               
Cow position:
               
chr1:57396174-57396036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
577-720
               

               
Cow position:
               
chr1:6077649-6077799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
578-707
               

               
Cow position:
               
chr1:51445635-51445765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 65
               

               
Conread position:
               
578-708
               

               
Cow position:
               
chr1:4573275-4573408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 67
               

               
Conread position:
               
578-708
               

               
Cow position:
               
chr1:55357529-55357399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
578-708
               

               
Cow position:
               
chr1:56618921-56618789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
578-708
               

               
Cow position:
               
chr1:56643833-56643700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
578-708
               

               
Cow position:
               
chr1:98494183-98494313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
80, 43
               

               
Conread position:
               
578-708
               

               
Cow position:
               
chr1:98577231-98577364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
20, 68
               

               
Conread position:
               
578-708
               

               
Cow position:
               
chr1:100400445-100400315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
80, 67
               

               
Conread position:
               
578-716
               

               
Cow position:
               
chr1:3035237-3035096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
578-720
               

               
Cow position:
               
chr1:30504227-30504372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
579-708
               

               
Cow position:
               
chr1:3924037-3923908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
579-708
               

               
Cow position:
               
chr1:3962927-3962805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
579-708
               

               
Cow position:
               
chr1:20002479-20002354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 68
               

               
Conread position:
               
579-708
               

               
Cow position:
               
chr1:43649777-43649656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
579-708
               

               
Cow position:
               
chr1:82406796-82406664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
579-708
               

               
Cow position:
               
chr1:93528447-93528581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
579-719
               

               
Cow position:
               
chr1:80988103-80988244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
579-721
               

               
Cow position:
               
chr1:71715931-71716080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
580-706
               

               
Cow position:
               
chr1:1459502-1459373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
580-708
               

               
Cow position:
               
chr1:25281918-25281789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
580-718
               

               
Cow position:
               
chr1:83082760-83082899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
581-708
               

               
Cow position:
               
chr1:20287876-20288005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
582-708
               

               
Cow position:
               
chr1:13637910-13637786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
582-708
               

               
Cow position:
               
chr1:41696817-41696945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
582-708
               

               
Cow position:
               
chr1:44506728-44506854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
582-708
               

               
Cow position:
               
chr1:94403976-94404099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
582-708
               

               
Cow position:
               
chr1:95056815-95056942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 62
               

               
Conread position:
               
582-708
               

               
Cow position:
               
chr1:98551474-98551603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 5
               

               
Conread position:
               
582-720
               

               
Cow position:
               
chr1:19482314-19482174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
582-720
               

               
Cow position:
               
chr1:71079193-71079057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
584-708
               

               
Cow position:
               
chr1:4290918-4291045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 64
               

               
Conread position:
               
584-708
               

               
Cow position:
               
chr1:21460629-21460751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
584-718
               

               
Cow position:
               
chr1:100512358-100512493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 59
               

               
Conread position:
               
585-708
               

               
Cow position:
               
chr1:65637967-65638095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
585-708
               

               
Cow position:
               
chr1:71818699-71818571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
585-709
               

               
Cow position:
               
chr1:40531346-40531229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
585-720
               

               
Cow position:
               
chr1:62996258-62996395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 58
               

               
Conread position:
               
586-708
               

               
Cow position:
               
chr1:73960465-73960592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
586-708
               

               
Cow position:
               
chr1:102784724-102784850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
587-708
               

               
Cow position:
               
chr1:69678561-69678435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
587-709
               

               
Cow position:
               
chr1:26729493-26729612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
71, 54
               

               
Conread position:
               
587-724
               

               
Cow position:
               
chr1:19545334-19545194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
71, 56
               

               
Conread position:
               
588-708
               

               
Cow position:
               
chr1:99543283-99543162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
590-708
               

               
Cow position:
               
chr1:43389280-43389163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
5, 54
               

               
Conread position:
               
590-708
               

               
Cow position:
               
chr1:44836461-44836346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 53
               

               
Conread position:
               
591-708
               

               
Cow position:
               
chr1:53650659-53650781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
591-708
               

               
Cow position:
               
chr1:87083435-87083553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
63, 52
               

               
Conread position:
               
592-708
               

               
Cow position:
               
chr1:24729069-24728950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
592-708
               

               
Cow position:
               
chr1:31348670-31348554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 53
               

               
Conread position:
               
592-744
               

               
Cow position:
               
chr1:52052933-52052775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
593-706
               

               
Cow position:
               
chr1:78809655-78809765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
65, 50
               

               
Conread position:
               
593-708
               

               
Cow position:
               
chr1:55705482-55705363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
593-708
               

               
Cow position:
               
chr1:64804336-64804217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 53
               

               
Conread position:
               
593-708
               

               
Cow position:
               
chr1:98360637-98360518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 52
               

               
Conread position:
               
593-712
               

               
Cow position:
               
chr1:81515011-81515135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
593-720
               

               
Cow position:
               
chr1:53397759-53397892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
65, 52
               

               
Conread position:
               
593-741
               

               
Cow position:
               
chr1:88304094-88304243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 49
               

               
Conread position:
               
594-707
               

               
Cow position:
               
chr1:53540163-53540281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
594-708
               

               
Cow position:
               
chr1:95050327-95050213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
594-720
               

               
Cow position:
               
chr1:26200993-26201120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 49
               

               
Conread position:
               
600-708
               

               
Cow position:
               
chr1:93043804-93043916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 46
               

               
Conread position:
               
603-708
               

               
Cow position:
               
chr1:98558002-98557893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 39
               

               
Conread position:
               
612-708
               

               
Cow position:
               
chr1:75382782-75382882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
45, 33
               
Show alignments to all cow chromosomes.