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Cow genome map

           
Conread name:
           
Ss1.1-rsag038_l19.5
        

               
Conread position:
               
34-443
               

               
Cow position:
               
chr1:90864582-90864153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
36-446
               

               
Cow position:
               
chr1:45555081-45555512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
39-255
               

               
Cow position:
               
chr1:82861499-82861713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
39-414
               

               
Cow position:
               
chr1:37309782-37309406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
44-443
               

               
Cow position:
               
chr1:52488235-52487841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
56-422
               

               
Cow position:
               
chr1:43448078-43447728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 30
               

               
Conread position:
               
58-247
               

               
Cow position:
               
chr1:50679548-50679359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
25, 154
               

               
Conread position:
               
58-331
               

               
Cow position:
               
chr1:83594073-83593785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 160
               

               
Conread position:
               
58-497
               

               
Cow position:
               
chr1:29935642-29935196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 180
               

               
Conread position:
               
61-392
               

               
Cow position:
               
chr1:5023992-5023671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
219, 18
               

               
Conread position:
               
62-259
               

               
Cow position:
               
chr1:11772338-11772138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 153
               

               
Conread position:
               
62-259
               

               
Cow position:
               
chr1:57639777-57639586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
62-342
               

               
Cow position:
               
chr1:57635210-57635496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
18, 106
               

               
Conread position:
               
63-446
               

               
Cow position:
               
chr1:5597451-5597066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 70
               

               
Conread position:
               
64-259
               

               
Cow position:
               
chr1:4293812-4293991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
67-262
               

               
Cow position:
               
chr1:22448836-22448648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
67-449
               

               
Cow position:
               
chr1:89834983-89835397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 333
               

               
Conread position:
               
67-495
               

               
Cow position:
               
chr1:98551465-98551918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
71-263
               

               
Cow position:
               
chr1:87083421-87083606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
95, 137
               

               
Conread position:
               
71-267
               

               
Cow position:
               
chr1:31348686-31348492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
8, 136
               

               
Conread position:
               
71-462
               

               
Cow position:
               
chr1:98594323-98594725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 109
               

               
Conread position:
               
73-258
               

               
Cow position:
               
chr1:44125883-44125712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 84
               

               
Conread position:
               
74-259
               

               
Cow position:
               
chr1:43358256-43358076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
74-265
               

               
Cow position:
               
chr1:19545345-19545153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 138
               

               
Conread position:
               
76-434
               

               
Cow position:
               
chr1:11728938-11729309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 135
               

               
Conread position:
               
77-452
               

               
Cow position:
               
chr1:89076873-89076481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
87, 9
               

               
Conread position:
               
79-267
               

               
Cow position:
               
chr1:73761588-73761411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
169, 92
               

               
Conread position:
               
79-495
               

               
Cow position:
               
chr1:68619172-68618730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
80-425
               

               
Cow position:
               
chr1:93043790-93044141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
77, 175
               

               
Conread position:
               
80-472
               

               
Cow position:
               
chr1:62291918-62291530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
172, 16
               

               
Conread position:
               
82-247
               

               
Cow position:
               
chr1:100450419-100450257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
82-259
               

               
Cow position:
               
chr1:20287882-20288054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
83-200
               

               
Cow position:
               
chr1:88029050-88029170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
83-267
               

               
Cow position:
               
chr1:81859462-81859280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
83-286
               

               
Cow position:
               
chr1:43893693-43893888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 125
               

               
Conread position:
               
83-338
               

               
Cow position:
               
chr1:54199615-54199349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
165, 25
               

               
Conread position:
               
83-341
               

               
Cow position:
               
chr1:88970828-88971088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
165, 10
               

               
Conread position:
               
83-415
               

               
Cow position:
               
chr1:64251284-64250938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
174, 116
               

               
Conread position:
               
83-426
               

               
Cow position:
               
chr1:41696822-41697180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 127
               

               
Conread position:
               
83-446
               

               
Cow position:
               
chr1:76019913-76019551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
189, 13
               

               
Conread position:
               
83-463
               

               
Cow position:
               
chr1:82884620-82884233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
165, 17
               

               
Conread position:
               
84-266
               

               
Cow position:
               
chr1:24235752-24235572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 118
               

               
Conread position:
               
84-267
               

               
Cow position:
               
chr1:15333649-15333832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
84-424
               

               
Cow position:
               
chr1:93499391-93499743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 122
               

               
Conread position:
               
85-200
               

               
Cow position:
               
chr1:29462622-29462737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 65
               

               
Conread position:
               
85-205
               

               
Cow position:
               
chr1:61725343-61725219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
85-234
               

               
Cow position:
               
chr1:40292196-40292042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
85-250
               

               
Cow position:
               
chr1:96713044-96712884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
85-265
               

               
Cow position:
               
chr1:95327383-95327205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
72, 121
               

               
Conread position:
               
85-266
               

               
Cow position:
               
chr1:20125381-20125560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
163, 86
               

               
Conread position:
               
85-267
               

               
Cow position:
               
chr1:44769342-44769165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
85-270
               

               
Cow position:
               
chr1:11873587-11873411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
163, 90
               

               
Conread position:
               
85-380
               

               
Cow position:
               
chr1:91800836-91800521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 229
               

               
Conread position:
               
85-423
               

               
Cow position:
               
chr1:24597422-24597774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
87, 120
               

               
Conread position:
               
85-435
               

               
Cow position:
               
chr1:31348140-31347796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
259, 87
               

               
Conread position:
               
85-439
               

               
Cow position:
               
chr1:68818028-68817661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
163, 28
               

               
Conread position:
               
85-443
               

               
Cow position:
               
chr1:34856859-34856488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
145, 62
               

               
Conread position:
               
85-444
               

               
Cow position:
               
chr1:47658123-47658488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
163, 80
               

               
Conread position:
               
86-192
               

               
Cow position:
               
chr1:33081253-33081147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-197
               

               
Cow position:
               
chr1:26934770-26934655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
86-197
               

               
Cow position:
               
chr1:98741452-98741563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-198
               

               
Cow position:
               
chr1:98023624-98023511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
86-198
               

               
Cow position:
               
chr1:98577248-98577360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-200
               

               
Cow position:
               
chr1:57957087-57956973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr1:88304093-88304212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-226
               

               
Cow position:
               
chr1:52510472-52510330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
86-235
               

               
Cow position:
               
chr1:52036671-52036522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-235
               

               
Cow position:
               
chr1:79002183-79002042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
86-245
               

               
Cow position:
               
chr1:67916807-67916959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr1:22628867-22628714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr1:24201968-24201823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr1:65637975-65638133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 124
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr1:71325476-71325323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr1:72141335-72141487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
86-250
               

               
Cow position:
               
chr1:55686448-55686290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
86-250
               

               
Cow position:
               
chr1:69941194-69941040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
86-250
               

               
Cow position:
               
chr1:77891585-77891744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
118, 90
               

               
Conread position:
               
86-255
               

               
Cow position:
               
chr1:74013496-74013327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 121
               

               
Conread position:
               
86-259
               

               
Cow position:
               
chr1:3035222-3035057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
86-259
               

               
Cow position:
               
chr1:57698683-57698509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
86-259
               

               
Cow position:
               
chr1:98708213-98708376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
86-261
               

               
Cow position:
               
chr1:99118156-99118331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
86-262
               

               
Cow position:
               
chr1:36874786-36874952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
86-263
               

               
Cow position:
               
chr1:36613504-36613335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
86-263
               

               
Cow position:
               
chr1:40531338-40531173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
86-265
               

               
Cow position:
               
chr1:3244621-3244794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
53, 119
               

               
Conread position:
               
86-266
               

               
Cow position:
               
chr1:53595096-53595267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr1:20799643-20799833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 152
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr1:33811705-33811877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
162, 61
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr1:42053553-42053385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr1:63905703-63905524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr1:75967207-75967379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
162, 64
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr1:79278671-79278499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
162, 34
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr1:87216233-87216407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
166, 52
               

               
Conread position:
               
86-268
               

               
Cow position:
               
chr1:97806563-97806737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
162, 36
               

               
Conread position:
               
86-270
               

               
Cow position:
               
chr1:29671753-29671571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 124
               

               
Conread position:
               
86-270
               

               
Cow position:
               
chr1:99136659-99136480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
160, 11
               

               
Conread position:
               
86-271
               

               
Cow position:
               
chr1:43380258-43380079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
51, 122
               

               
Conread position:
               
86-311
               

               
Cow position:
               
chr1:24528827-24528619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
156, 9
               

               
Conread position:
               
86-326
               

               
Cow position:
               
chr1:3776843-3776601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
179, 88
               

               
Conread position:
               
86-332
               

               
Cow position:
               
chr1:78783317-78783572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
186, 121
               

               
Conread position:
               
86-335
               

               
Cow position:
               
chr1:24655731-24655985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
86-336
               

               
Cow position:
               
chr1:15311639-15311890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 93
               

               
Conread position:
               
86-338
               

               
Cow position:
               
chr1:61724254-61723989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
86-338
               

               
Cow position:
               
chr1:71818691-71818433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
71, 222
               

               
Conread position:
               
86-338
               

               
Cow position:
               
chr1:79663895-79663643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
86-342
               

               
Cow position:
               
chr1:1991654-1991385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 176
               

               
Conread position:
               
86-342
               

               
Cow position:
               
chr1:3752171-3751904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
162, 121
               

               
Conread position:
               
86-342
               

               
Cow position:
               
chr1:73561879-73561613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
169, 121
               

               
Conread position:
               
86-343
               

               
Cow position:
               
chr1:30034317-30034568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
163, 22
               

               
Conread position:
               
86-343
               

               
Cow position:
               
chr1:31235161-31234896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
73, 116
               

               
Conread position:
               
86-343
               

               
Cow position:
               
chr1:55163693-55163954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 184
               

               
Conread position:
               
86-343
               

               
Cow position:
               
chr1:101547271-101546995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
86-345
               

               
Cow position:
               
chr1:55135607-55135868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
162, 17
               

               
Conread position:
               
86-350
               

               
Cow position:
               
chr1:68282567-68282833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 121
               

               
Conread position:
               
86-351
               

               
Cow position:
               
chr1:57396157-57395896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 96
               

               
Conread position:
               
86-355
               

               
Cow position:
               
chr1:57155631-57155372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
69, 122
               

               
Conread position:
               
86-361
               

               
Cow position:
               
chr1:61564563-61564853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 179
               

               
Conread position:
               
86-367
               

               
Cow position:
               
chr1:95100734-95101020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
86-384
               

               
Cow position:
               
chr1:70434764-70435081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
44, 126
               

               
Conread position:
               
86-384
               

               
Cow position:
               
chr1:102647498-102647190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
118, 75
               

               
Conread position:
               
86-389
               

               
Cow position:
               
chr1:68951402-68951713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
162, 70
               

               
Conread position:
               
86-389
               

               
Cow position:
               
chr1:85596715-85597026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
159, 59
               

               
Conread position:
               
86-389
               

               
Cow position:
               
chr1:97761397-97761686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
227, 75
               

               
Conread position:
               
86-390
               

               
Cow position:
               
chr1:89937591-89937279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
10, 127
               

               
Conread position:
               
86-391
               

               
Cow position:
               
chr1:20384850-20384533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 138
               

               
Conread position:
               
86-394
               

               
Cow position:
               
chr1:44506739-44507066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
162, 26
               

               
Conread position:
               
86-396
               

               
Cow position:
               
chr1:25183896-25184205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
50, 127
               

               
Conread position:
               
86-396
               

               
Cow position:
               
chr1:53424958-53425272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 126
               

               
Conread position:
               
86-397
               

               
Cow position:
               
chr1:45289102-45288775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
86-405
               

               
Cow position:
               
chr1:68217588-68217262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
183, 102
               

               
Conread position:
               
86-407
               

               
Cow position:
               
chr1:55146572-55146902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
71, 110
               

               
Conread position:
               
86-408
               

               
Cow position:
               
chr1:20204797-20205134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
84, 122
               

               
Conread position:
               
86-408
               

               
Cow position:
               
chr1:37707198-37706870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
77, 170
               

               
Conread position:
               
86-408
               

               
Cow position:
               
chr1:49795775-49796098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
66, 88
               

               
Conread position:
               
86-408
               

               
Cow position:
               
chr1:89349748-89350072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
199, 73
               

               
Conread position:
               
86-411
               

               
Cow position:
               
chr1:51394190-51394528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
86-417
               

               
Cow position:
               
chr1:76470430-76470759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
162, 64
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr1:19465833-19466170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
158, 95
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr1:22826940-22827277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
177, 75
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr1:31499398-31499744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
166, 91
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr1:72304600-72304270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
186, 115
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr1:95215415-95215071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 124
               

               
Conread position:
               
86-421
               

               
Cow position:
               
chr1:96365446-96365778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr1:31934284-31934628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 67
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr1:42138637-42138979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
86-423
               

               
Cow position:
               
chr1:75744631-75744986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
162, 115
               

               
Conread position:
               
86-423
               

               
Cow position:
               
chr1:102266496-102266147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
174, 74
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr1:13637900-13637541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
154, 75
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr1:34685966-34686298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
176, 20
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr1:55229755-55230099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
163, 125
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr1:55705483-55705120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 124
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr1:81913381-81913032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
77, 172
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr1:84255525-84255890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr1:84812166-84811817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
75, 146
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr1:3924023-3923676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
183, 48
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr1:4290929-4291288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
162, 114
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr1:41252632-41252286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
71, 171
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr1:42887492-42887153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
163, 78
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr1:43505294-43505653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 64
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr1:52496547-52496894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
21, 113
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr1:53397758-53398100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
71, 120
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr1:73960472-73960824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr1:93528461-93528825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 125
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr1:100551741-100552099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
162, 89
               

               
Conread position:
               
86-427
               

               
Cow position:
               
chr1:1053360-1053705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
116, 11
               

               
Conread position:
               
86-427
               

               
Cow position:
               
chr1:42360037-42360414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
86-427
               

               
Cow position:
               
chr1:53369837-53370209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
62, 133
               

               
Conread position:
               
86-428
               

               
Cow position:
               
chr1:54478095-54478456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
162, 116
               

               
Conread position:
               
86-433
               

               
Cow position:
               
chr1:49839278-49839617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
150, 118
               

               
Conread position:
               
86-434
               

               
Cow position:
               
chr1:3137704-3138047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
162, 25
               

               
Conread position:
               
86-434
               

               
Cow position:
               
chr1:24534472-24534124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
162, 76
               

               
Conread position:
               
86-436
               

               
Cow position:
               
chr1:64302463-64302108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
156, 112
               

               
Conread position:
               
86-439
               

               
Cow position:
               
chr1:69678555-69678185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 125
               

               
Conread position:
               
86-440
               

               
Cow position:
               
chr1:53374206-53374568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
162, 77
               

               
Conread position:
               
86-440
               

               
Cow position:
               
chr1:101822727-101822376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
162, 75
               

               
Conread position:
               
86-442
               

               
Cow position:
               
chr1:94226777-94226414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
162, 89
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:1981339-1980972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 73
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:2075557-2075213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
179, 64
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:3323629-3324011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 339
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:34300777-34300409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
162, 89
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:54258338-54258706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
162, 76
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:64804337-64803960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:71119282-71119658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
78, 52
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:79165320-79164941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
61, 125
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:86113642-86113259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:98360638-98360262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr1:101792327-101791980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
258, 133
               

               
Conread position:
               
86-444
               

               
Cow position:
               
chr1:1956558-1956194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
16, 117
               

               
Conread position:
               
86-444
               

               
Cow position:
               
chr1:61005795-61005420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
66, 219
               

               
Conread position:
               
86-445
               

               
Cow position:
               
chr1:51531544-51531900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 56
               

               
Conread position:
               
86-446
               

               
Cow position:
               
chr1:22728818-22729201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 120
               

               
Conread position:
               
86-446
               

               
Cow position:
               
chr1:39069180-39068813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
162, 79
               

               
Conread position:
               
86-446
               

               
Cow position:
               
chr1:81569264-81568883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 120
               

               
Conread position:
               
86-447
               

               
Cow position:
               
chr1:55357515-55357150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
171, 121
               

               
Conread position:
               
86-447
               

               
Cow position:
               
chr1:81515010-81515378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
66, 147
               

               
Conread position:
               
86-448
               

               
Cow position:
               
chr1:12222834-12222462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
154, 121
               

               
Conread position:
               
86-448
               

               
Cow position:
               
chr1:65103407-65103761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
86-449
               

               
Cow position:
               
chr1:7442756-7443121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
163, 14
               

               
Conread position:
               
86-449
               

               
Cow position:
               
chr1:74822222-74822599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
66, 116
               

               
Conread position:
               
86-449
               

               
Cow position:
               
chr1:84239336-84238977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
162, 84
               

               
Conread position:
               
86-452
               

               
Cow position:
               
chr1:88618364-88618750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
77, 96
               

               
Conread position:
               
86-461
               

               
Cow position:
               
chr1:1165372-1165756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
86-461
               

               
Cow position:
               
chr1:102784731-102785115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 93
               

               
Conread position:
               
86-462
               

               
Cow position:
               
chr1:21835719-21836090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
162, 87
               

               
Conread position:
               
86-464
               

               
Cow position:
               
chr1:83747711-83748108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
86-479
               

               
Cow position:
               
chr1:36931930-36932336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
174, 81
               

               
Conread position:
               
86-488
               

               
Cow position:
               
chr1:67821439-67821032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
162, 103
               

               
Conread position:
               
86-489
               

               
Cow position:
               
chr1:93810212-93810621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
77, 114
               

               
Conread position:
               
86-494
               

               
Cow position:
               
chr1:25281905-25281464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
118, 409
               

               
Conread position:
               
86-494
               

               
Cow position:
               
chr1:48580902-48581320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
162, 82
               

               
Conread position:
               
86-497
               

               
Cow position:
               
chr1:1877798-1878218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
73, 93
               

               
Conread position:
               
86-497
               

               
Cow position:
               
chr1:19482302-19481880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
134, 72
               

               
Conread position:
               
86-511
               

               
Cow position:
               
chr1:16767314-16766875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
71, 116
               

               
Conread position:
               
86-515
               

               
Cow position:
               
chr1:45007237-45007679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
71, 123
               

               
Conread position:
               
86-515
               

               
Cow position:
               
chr1:53495234-53495666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
71, 228
               

               
Conread position:
               
86-528
               

               
Cow position:
               
chr1:61884686-61885139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 141
               

               
Conread position:
               
86-554
               

               
Cow position:
               
chr1:18937063-18936588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 126
               

               
Conread position:
               
86-560
               

               
Cow position:
               
chr1:21460638-21461114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
160, 89
               

               
Conread position:
               
86-597
               

               
Cow position:
               
chr1:51968241-51968753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
86-598
               

               
Cow position:
               
chr1:45535473-45535992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
86-600
               

               
Cow position:
               
chr1:81613156-81613699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 75
               

               
Conread position:
               
87-199
               

               
Cow position:
               
chr1:41138583-41138469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
87-200
               

               
Cow position:
               
chr1:26896053-26895941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
87-200
               

               
Cow position:
               
chr1:71045526-71045639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-200
               

               
Cow position:
               
chr1:78030711-78030597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr1:3872623-3872741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr1:26159660-26159538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr1:62996266-62996384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr1:71946599-71946484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr1:98562931-98563053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
87-218
               

               
Cow position:
               
chr1:61304453-61304584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-227
               

               
Cow position:
               
chr1:63311335-63311467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
87-234
               

               
Cow position:
               
chr1:634963-635105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-243
               

               
Cow position:
               
chr1:95071757-95071904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr1:22467702-22467858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
147, 120
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr1:44836458-44836299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
117, 88
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr1:81180208-81180050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
70, 115
               

               
Conread position:
               
87-253
               

               
Cow position:
               
chr1:23905767-23905932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr1:666132-666301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr1:20002464-20002304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr1:32631238-32631403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr1:33716993-33717164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr1:38278273-38278098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 8
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr1:82504738-82504910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
72, 126
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr1:96478467-96478633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
146, 78
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr1:21508159-21508330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 104
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr1:34000677-34000851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 116
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr1:56748361-56748533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr1:100512367-100512538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-263
               

               
Cow position:
               
chr1:82338012-82337841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
87-266
               

               
Cow position:
               
chr1:42968546-42968368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 124
               

               
Conread position:
               
87-266
               

               
Cow position:
               
chr1:84116173-84116341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr1:3340709-3340883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 124
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr1:5873200-5873023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
161, 111
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr1:19998264-19998093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr1:47008802-47008979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
76, 92
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr1:52753394-52753219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr1:85361627-85361808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
76, 124
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr1:89395364-89395549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr1:92437219-92437048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr1:99095135-99095310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
87-271
               

               
Cow position:
               
chr1:52329757-52329577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
159, 92
               

               
Conread position:
               
87-291
               

               
Cow position:
               
chr1:70380374-70380176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
178, 115
               

               
Conread position:
               
87-303
               

               
Cow position:
               
chr1:30504242-30504458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
72, 99
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr1:84786542-84786780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr1:102826042-102825785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
170, 74
               

               
Conread position:
               
87-372
               

               
Cow position:
               
chr1:57305604-57305890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
193, 120
               

               
Conread position:
               
87-372
               

               
Cow position:
               
chr1:101551229-101551534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
46, 52
               

               
Conread position:
               
87-378
               

               
Cow position:
               
chr1:77620322-77620627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
57, 169
               

               
Conread position:
               
87-385
               

               
Cow position:
               
chr1:13614947-13614649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
67, 47
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr1:1185511-1185818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 120
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr1:61175955-61176267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr1:61735667-61735346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 124
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr1:71748235-71747931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
193, 120
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr1:73584630-73584321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
140, 48
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr1:91817002-91816682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
72, 124
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr1:92370589-92370280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
87-391
               

               
Cow position:
               
chr1:60707175-60707493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
75, 124
               

               
Conread position:
               
87-392
               

               
Cow position:
               
chr1:69540054-69540373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
68, 230
               

               
Conread position:
               
87-397
               

               
Cow position:
               
chr1:57637144-57637453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
188, 120
               

               
Conread position:
               
87-398
               

               
Cow position:
               
chr1:10655249-10655572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
87-398
               

               
Cow position:
               
chr1:79590872-79591193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
76, 124
               

               
Conread position:
               
87-400
               

               
Cow position:
               
chr1:6760246-6759936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
191, 88
               

               
Conread position:
               
87-400
               

               
Cow position:
               
chr1:42555041-42555365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
170, 62
               

               
Conread position:
               
87-408
               

               
Cow position:
               
chr1:81355932-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
117, 93
               

               
Conread position:
               
87-408
               

               
Cow position:
               
chr1:88652402-88652743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
161, 115
               

               
Conread position:
               
87-410
               

               
Cow position:
               
chr1:95017741-95017438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
159, 16
               

               
Conread position:
               
87-413
               

               
Cow position:
               
chr1:77720460-77720137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
162, 89
               

               
Conread position:
               
87-417
               

               
Cow position:
               
chr1:72035157-72034808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
87-418
               

               
Cow position:
               
chr1:94212005-94212344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
161, 115
               

               
Conread position:
               
87-420
               

               
Cow position:
               
chr1:52039408-52039755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
185, 111
               

               
Conread position:
               
87-420
               

               
Cow position:
               
chr1:69539470-69539810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
161, 38
               

               
Conread position:
               
87-421
               

               
Cow position:
               
chr1:35162175-35162530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
72, 124
               

               
Conread position:
               
87-422
               

               
Cow position:
               
chr1:97820457-97820801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
161, 83
               

               
Conread position:
               
87-423
               

               
Cow position:
               
chr1:42874175-42873828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
117, 168
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr1:23634129-23633807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
252, 63
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr1:41056456-41056805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
141, 34
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr1:84240671-84241005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
161, 74
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr1:99609137-99609491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
76, 121
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr1:100800128-100800474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:874415-874778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:4027633-4027987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:8349539-8349200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
161, 78
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:10632825-10633172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:10778345-10778687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
161, 70
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:10942320-10941971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
158, 88
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:10964066-10964415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
158, 88
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:21954446-21954100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
117, 159
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:72012032-72011689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
156, 62
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:79844240-79844589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
117, 74
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr1:80988118-80988470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
185, 113
               

               
Conread position:
               
87-428
               

               
Cow position:
               
chr1:52435042-52435399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
164, 120
               

               
Conread position:
               
87-430
               

               
Cow position:
               
chr1:5135920-5135581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
194, 71
               

               
Conread position:
               
87-430
               

               
Cow position:
               
chr1:34159603-34159965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 123
               

               
Conread position:
               
87-431
               

               
Cow position:
               
chr1:56477366-56477723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
87-432
               

               
Cow position:
               
chr1:61392020-61391656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
87-435
               

               
Cow position:
               
chr1:15547240-15547605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
161, 119
               

               
Conread position:
               
87-439
               

               
Cow position:
               
chr1:53520678-53521051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 121
               

               
Conread position:
               
87-440
               

               
Cow position:
               
chr1:33719885-33720242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
76, 124
               

               
Conread position:
               
87-441
               

               
Cow position:
               
chr1:51445651-51446026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
161, 119
               

               
Conread position:
               
87-441
               

               
Cow position:
               
chr1:96964092-96964458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
174, 110
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr1:11914106-11913737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
179, 119
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr1:63596288-63595914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr1:70297043-70297418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 126
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr1:72069055-72068694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
117, 51
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr1:78857551-78857189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
67, 122
               

               
Conread position:
               
87-446
               

               
Cow position:
               
chr1:50931197-50930834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
115, 55
               

               
Conread position:
               
87-446
               

               
Cow position:
               
chr1:53308621-53308251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
85, 112
               

               
Conread position:
               
87-448
               

               
Cow position:
               
chr1:13413798-13414173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
72, 111
               

               
Conread position:
               
87-449
               

               
Cow position:
               
chr1:48105662-48105288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
161, 115
               

               
Conread position:
               
87-449
               

               
Cow position:
               
chr1:69264593-69264957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 65
               

               
Conread position:
               
87-449
               

               
Cow position:
               
chr1:78809655-78810023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
161, 88
               

               
Conread position:
               
87-452
               

               
Cow position:
               
chr1:28176771-28177157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-453
               

               
Cow position:
               
chr1:66138088-66138467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
157, 75
               

               
Conread position:
               
87-458
               

               
Cow position:
               
chr1:11226474-11226091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
76, 119
               

               
Conread position:
               
87-464
               

               
Cow position:
               
chr1:10064207-10063817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 124
               

               
Conread position:
               
87-464
               

               
Cow position:
               
chr1:48731056-48730668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 27
               

               
Conread position:
               
87-471
               

               
Cow position:
               
chr1:26729499-26729885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
178, 88
               

               
Conread position:
               
87-471
               

               
Cow position:
               
chr1:52994795-52995195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
69, 214
               

               
Conread position:
               
87-481
               

               
Cow position:
               
chr1:72286278-72285882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
161, 72
               

               
Conread position:
               
87-485
               

               
Cow position:
               
chr1:43822148-43822587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
85, 413
               

               
Conread position:
               
87-502
               

               
Cow position:
               
chr1:85162776-85162345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 172
               

               
Conread position:
               
87-503
               

               
Cow position:
               
chr1:57900969-57900553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
87-504
               

               
Cow position:
               
chr1:68827134-68826706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 111
               

               
Conread position:
               
87-507
               

               
Cow position:
               
chr1:52774749-52774319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
117, 167
               

               
Conread position:
               
87-516
               

               
Cow position:
               
chr1:100400430-100399993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
159, 120
               

               
Conread position:
               
87-538
               

               
Cow position:
               
chr1:39418347-39417886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
161, 67
               

               
Conread position:
               
87-539
               

               
Cow position:
               
chr1:39427210-39426771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
134, 81
               

               
Conread position:
               
87-564
               

               
Cow position:
               
chr1:89742240-89741736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
61, 380
               

               
Conread position:
               
87-578
               

               
Cow position:
               
chr1:11770522-11770034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 122
               

               
Conread position:
               
87-584
               

               
Cow position:
               
chr1:24133284-24132761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
157, 67
               

               
Conread position:
               
87-594
               

               
Cow position:
               
chr1:69695237-69694696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 239
               

               
Conread position:
               
88-205
               

               
Cow position:
               
chr1:9437776-9437659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
88-205
               

               
Cow position:
               
chr1:81579536-81579656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
88-246
               

               
Cow position:
               
chr1:24571117-24570964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
88-247
               

               
Cow position:
               
chr1:95050327-95050172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
88-259
               

               
Cow position:
               
chr1:3757725-3757892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
88-259
               

               
Cow position:
               
chr1:68276179-68276349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
88-259
               

               
Cow position:
               
chr1:81563506-81563672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
88-259
               

               
Cow position:
               
chr1:83082775-83082941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr1:26200993-26201158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
88-267
               

               
Cow position:
               
chr1:52506771-52506607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
88-268
               

               
Cow position:
               
chr1:41004594-41004414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
88-356
               

               
Cow position:
               
chr1:53207922-53207657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
70, 121
               

               
Conread position:
               
88-382
               

               
Cow position:
               
chr1:51628729-51628432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
74, 122
               

               
Conread position:
               
88-383
               

               
Cow position:
               
chr1:31414186-31413890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
157, 89
               

               
Conread position:
               
88-390
               

               
Cow position:
               
chr1:7186560-7186877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
67, 124
               

               
Conread position:
               
88-390
               

               
Cow position:
               
chr1:83982605-83982291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
14, 124
               

               
Conread position:
               
88-400
               

               
Cow position:
               
chr1:51981000-51981321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 52
               

               
Conread position:
               
88-400
               

               
Cow position:
               
chr1:81868954-81868630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
88-400
               

               
Cow position:
               
chr1:82936809-82936498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
188, 75
               

               
Conread position:
               
88-420
               

               
Cow position:
               
chr1:70538376-70538731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 180
               

               
Conread position:
               
88-424
               

               
Cow position:
               
chr1:43389275-43388929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
164, 97
               

               
Conread position:
               
88-424
               

               
Cow position:
               
chr1:100705905-100706250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
159, 86
               

               
Conread position:
               
88-436
               

               
Cow position:
               
chr1:97611880-97611523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
187, 118
               

               
Conread position:
               
88-437
               

               
Cow position:
               
chr1:54732685-54732350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
224, 69
               

               
Conread position:
               
88-443
               

               
Cow position:
               
chr1:48444410-48444054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
160, 59
               

               
Conread position:
               
88-446
               

               
Cow position:
               
chr1:6941238-6941612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
160, 111
               

               
Conread position:
               
88-446
               

               
Cow position:
               
chr1:6958651-6959025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
160, 111
               

               
Conread position:
               
88-518
               

               
Cow position:
               
chr1:46940089-46939661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 114
               

               
Conread position:
               
88-598
               

               
Cow position:
               
chr1:56229026-56229530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
6, 88
               

               
Conread position:
               
89-198
               

               
Cow position:
               
chr1:88338469-88338582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
89-217
               

               
Cow position:
               
chr1:85783299-85783428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
89-235
               

               
Cow position:
               
chr1:30882542-30882398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
44, 50
               

               
Conread position:
               
89-259
               

               
Cow position:
               
chr1:31765623-31765451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
68, 122
               

               
Conread position:
               
89-267
               

               
Cow position:
               
chr1:78794962-78794794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
104, 118
               

               
Conread position:
               
89-275
               

               
Cow position:
               
chr1:78689707-78689895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 135
               

               
Conread position:
               
89-380
               

               
Cow position:
               
chr1:27358717-27359016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 122
               

               
Conread position:
               
89-390
               

               
Cow position:
               
chr1:63391000-63390678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
153, 118
               

               
Conread position:
               
89-392
               

               
Cow position:
               
chr1:4374565-4374246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
150, 102
               

               
Conread position:
               
89-397
               

               
Cow position:
               
chr1:90640798-90641124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
65, 122
               

               
Conread position:
               
89-423
               

               
Cow position:
               
chr1:8396-8737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
176, 88
               

               
Conread position:
               
89-425
               

               
Cow position:
               
chr1:57575994-57575637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 122
               

               
Conread position:
               
89-427
               

               
Cow position:
               
chr1:95176709-95177063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
70, 224
               

               
Conread position:
               
89-437
               

               
Cow position:
               
chr1:16855917-16855562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
180, 113
               

               
Conread position:
               
89-443
               

               
Cow position:
               
chr1:74084418-74084051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
160, 42
               

               
Conread position:
               
89-451
               

               
Cow position:
               
chr1:80336473-80336098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 122
               

               
Conread position:
               
89-494
               

               
Cow position:
               
chr1:88911116-88910711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
113, 174
               

               
Conread position:
               
89-495
               

               
Cow position:
               
chr1:4032408-4032824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
159, 58
               

               
Conread position:
               
90-259
               

               
Cow position:
               
chr1:76222916-76222755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
90-259
               

               
Cow position:
               
chr1:81363767-81363920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
90-267
               

               
Cow position:
               
chr1:56711847-56711671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
74, 59
               

               
Conread position:
               
90-412
               

               
Cow position:
               
chr1:64678472-64678806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 150
               

               
Conread position:
               
90-417
               

               
Cow position:
               
chr1:66430072-66430407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
90-425
               

               
Cow position:
               
chr1:95056830-95057169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
156, 112
               

               
Conread position:
               
90-426
               

               
Cow position:
               
chr1:68854949-68855289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
114, 66
               

               
Conread position:
               
90-440
               

               
Cow position:
               
chr1:62964054-62964406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
191, 60
               

               
Conread position:
               
90-485
               

               
Cow position:
               
chr1:90868661-90868265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
158, 48
               

               
Conread position:
               
91-431
               

               
Cow position:
               
chr1:96472205-96472560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
33, 132
               

               
Conread position:
               
91-439
               

               
Cow position:
               
chr1:53622740-53623092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
155, 17
               

               
Conread position:
               
92-205
               

               
Cow position:
               
chr1:94378810-94378922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
92-516
               

               
Cow position:
               
chr1:101834613-101835031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 56
               

               
Conread position:
               
93-271
               

               
Cow position:
               
chr1:68782873-68782690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
93-392
               

               
Cow position:
               
chr1:40599826-40600136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
93-425
               

               
Cow position:
               
chr1:82880443-82880768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
101, 20
               

               
Conread position:
               
93-497
               

               
Cow position:
               
chr1:34771726-34771304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
94-408
               

               
Cow position:
               
chr1:26702429-26702100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
154, 98
               

               
Conread position:
               
95-417
               

               
Cow position:
               
chr1:98461070-98461402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 107
               

               
Conread position:
               
95-455
               

               
Cow position:
               
chr1:7971210-7971568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
172, 63
               

               
Conread position:
               
96-388
               

               
Cow position:
               
chr1:6305088-6304777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
62, 114
               

               
Conread position:
               
96-451
               

               
Cow position:
               
chr1:53671969-53671600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 158
               

               
Conread position:
               
97-262
               

               
Cow position:
               
chr1:41954474-41954306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
97-328
               

               
Cow position:
               
chr1:98558002-98557764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
97-420
               

               
Cow position:
               
chr1:81228558-81228210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
67, 81
               

               
Conread position:
               
97-448
               

               
Cow position:
               
chr1:85867375-85867738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 115
               

               
Conread position:
               
97-511
               

               
Cow position:
               
chr1:49433483-49433053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
62, 113
               

               
Conread position:
               
97-518
               

               
Cow position:
               
chr1:68845704-68845263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 110
               

               
Conread position:
               
98-271
               

               
Cow position:
               
chr1:53613410-53613243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
141, 51
               

               
Conread position:
               
98-417
               

               
Cow position:
               
chr1:36997975-36998301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
150, 109
               

               
Conread position:
               
98-443
               

               
Cow position:
               
chr1:8287831-8287493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
215, 109
               

               
Conread position:
               
100-362
               

               
Cow position:
               
chr1:68995956-68996234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
57, 111
               

               
Conread position:
               
100-400
               

               
Cow position:
               
chr1:74956239-74955922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
64, 108
               

               
Conread position:
               
104-392
               

               
Cow position:
               
chr1:75382780-75383068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
106-267
               

               
Cow position:
               
chr1:95654925-95654766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
106-403
               

               
Cow position:
               
chr1:40482621-40482311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
106-421
               

               
Cow position:
               
chr1:99512462-99512146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
172, 100
               

               
Conread position:
               
106-434
               

               
Cow position:
               
chr1:90976292-90975957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
143, 54
               

               
Conread position:
               
106-443
               

               
Cow position:
               
chr1:26179024-26178671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
106-445
               

               
Cow position:
               
chr1:97778786-97779136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
108-384
               

               
Cow position:
               
chr1:98310854-98311155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
108-392
               

               
Cow position:
               
chr1:62036593-62036893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
110-408
               

               
Cow position:
               
chr1:75141801-75142104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
159, 39
               

               
Conread position:
               
111-477
               

               
Cow position:
               
chr1:19885180-19885554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 146
               

               
Conread position:
               
112-390
               

               
Cow position:
               
chr1:72103643-72103939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 95
               

               
Conread position:
               
113-425
               

               
Cow position:
               
chr1:99570667-99570363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
200, 31
               

               
Conread position:
               
113-483
               

               
Cow position:
               
chr1:28563771-28563388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
152, 94
               

               
Conread position:
               
114-446
               

               
Cow position:
               
chr1:43340824-43340487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
115-433
               

               
Cow position:
               
chr1:94261347-94261668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
157, 50
               

               
Conread position:
               
116-267
               

               
Cow position:
               
chr1:91039375-91039227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
122-422
               

               
Cow position:
               
chr1:83072250-83072564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 153
               

               
Conread position:
               
123-255
               

               
Cow position:
               
chr1:82443649-82443524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
123-267
               

               
Cow position:
               
chr1:51654218-51654359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
123-444
               

               
Cow position:
               
chr1:32001513-32001182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
119, 59
               

               
Conread position:
               
124-444
               

               
Cow position:
               
chr1:25734662-25735011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
126-417
               

               
Cow position:
               
chr1:71227887-71228208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
127-434
               

               
Cow position:
               
chr1:54156929-54156601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
31, 87
               

               
Conread position:
               
127-443
               

               
Cow position:
               
chr1:33207063-33206737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
129-425
               

               
Cow position:
               
chr1:63530394-63530684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
122, 31
               

               
Conread position:
               
133-512
               

               
Cow position:
               
chr1:24778161-24777789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
124, 35
               

               
Conread position:
               
135-546
               

               
Cow position:
               
chr1:68763862-68763439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
113, 63
               

               
Conread position:
               
138-435
               

               
Cow position:
               
chr1:20667919-20667608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
110, 66
               

               
Conread position:
               
143-417
               

               
Cow position:
               
chr1:49317669-49317380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
105, 63
               

               
Conread position:
               
143-592
               

               
Cow position:
               
chr1:77880903-77880435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
106, 40
               

               
Conread position:
               
146-425
               

               
Cow position:
               
chr1:101280885-101280614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
167, 61
               

               
Conread position:
               
146-463
               

               
Cow position:
               
chr1:77133590-77133918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr1:21560870-21561126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
187, 51
               

               
Conread position:
               
151-512
               

               
Cow position:
               
chr1:86110896-86110535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
156-408
               

               
Cow position:
               
chr1:77683198-77683459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
156-578
               

               
Cow position:
               
chr1:97938810-97939236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 19
               

               
Conread position:
               
158-443
               

               
Cow position:
               
chr1:93554686-93554976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
114, 41
               

               
Conread position:
               
162-507
               

               
Cow position:
               
chr1:5579906-5580267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
58, 154
               

               
Conread position:
               
164-584
               

               
Cow position:
               
chr1:65909375-65909782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
85, 43
               

               
Conread position:
               
166-587
               

               
Cow position:
               
chr1:23512804-23512389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
106, 41
               

               
Conread position:
               
177-417
               

               
Cow position:
               
chr1:30047732-30047486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
212-414
               

               
Cow position:
               
chr1:6826400-6826186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
54, 100
               

               
Conread position:
               
212-414
               

               
Cow position:
               
chr1:61543029-61542806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
212-422
               

               
Cow position:
               
chr1:80422169-80422394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
212-440
               

               
Cow position:
               
chr1:56225682-56225925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 35
               

               
Conread position:
               
212-518
               

               
Cow position:
               
chr1:17317450-17317140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
213-425
               

               
Cow position:
               
chr1:6854389-6854184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
213-435
               

               
Cow position:
               
chr1:43855191-43855428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 222
               

               
Conread position:
               
213-599
               

               
Cow position:
               
chr1:76436380-76436772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 85
               

               
Conread position:
               
214-443
               

               
Cow position:
               
chr1:91811678-91811919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
214-467
               

               
Cow position:
               
chr1:81580066-81580346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
215-435
               

               
Cow position:
               
chr1:67919039-67919270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
223-512
               

               
Cow position:
               
chr1:55818961-55819266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 240
               

               
Conread position:
               
266-421
               

               
Cow position:
               
chr1:45223540-45223701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
266-435
               

               
Cow position:
               
chr1:42868977-42868805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
266-443
               

               
Cow position:
               
chr1:22823863-22824046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
266-443
               

               
Cow position:
               
chr1:100474192-100474376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
266-515
               

               
Cow position:
               
chr1:98576006-98576263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
270-481
               

               
Cow position:
               
chr1:68672633-68672428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
272-449
               

               
Cow position:
               
chr1:186308-186133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
289-433
               

               
Cow position:
               
chr1:2462365-2462510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
292-464
               

               
Cow position:
               
chr1:14106633-14106465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
292-471
               

               
Cow position:
               
chr1:8347108-8347292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
303-600
               

               
Cow position:
               
chr1:67918751-67919050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
316-584
               

               
Cow position:
               
chr1:57359472-57359734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 115
               

               
Conread position:
               
355-543
               

               
Cow position:
               
chr1:15167885-15167701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
98, 60
               

               
Conread position:
               
356-579
               

               
Cow position:
               
chr1:32215488-32215259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
73, 48
               

               
Conread position:
               
406-599
               

               
Cow position:
               
chr1:67346192-67346387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
426-597
               

               
Cow position:
               
chr1:17317291-17317116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
433-579
               

               
Cow position:
               
chr1:50992021-50992168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
453-600
               

               
Cow position:
               
chr1:11708940-11708796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
464-577
               

               
Cow position:
               
chr1:65883305-65883421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               
Show alignments to all cow chromosomes.