• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-rsag038_l19.5
        

               
Conread position:
               
67-454
               

               
Cow position:
               
chr12:27803346-27802944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 195
               

               
Conread position:
               
77-443
               

               
Cow position:
               
chr12:29780185-29779815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
172, 130
               

               
Conread position:
               
83-270
               

               
Cow position:
               
chr12:31532681-31532504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
174, 76
               

               
Conread position:
               
83-449
               

               
Cow position:
               
chr12:31228298-31228674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
165, 10
               

               
Conread position:
               
83-549
               

               
Cow position:
               
chr12:5800758-5801246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
163, 68
               

               
Conread position:
               
84-330
               

               
Cow position:
               
chr12:28650678-28650935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
85-200
               

               
Cow position:
               
chr12:3600171-3600056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
85-343
               

               
Cow position:
               
chr12:10028621-10028878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 155
               

               
Conread position:
               
85-348
               

               
Cow position:
               
chr12:17495467-17495212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
159, 121
               

               
Conread position:
               
85-390
               

               
Cow position:
               
chr12:43788755-43789069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
71, 127
               

               
Conread position:
               
85-425
               

               
Cow position:
               
chr12:20479589-20479258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
181, 85
               

               
Conread position:
               
85-441
               

               
Cow position:
               
chr12:4866539-4866913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 369
               

               
Conread position:
               
85-443
               

               
Cow position:
               
chr12:27563112-27562744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
76, 125
               

               
Conread position:
               
85-493
               

               
Cow position:
               
chr12:45820632-45820223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
143, 53
               

               
Conread position:
               
86-204
               

               
Cow position:
               
chr12:20283636-20283753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr12:17486411-17486292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr12:20795633-20795752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
46, 53
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr12:40307422-40307543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr12:7108914-7109071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
159, 121
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr12:12017602-12017759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
77, 123
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr12:12976460-12976298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 125
               

               
Conread position:
               
86-259
               

               
Cow position:
               
chr12:24032732-24032896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
86-259
               

               
Cow position:
               
chr12:41083793-41083960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
86-261
               

               
Cow position:
               
chr12:21922161-21922328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 83
               

               
Conread position:
               
86-262
               

               
Cow position:
               
chr12:12178647-12178816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
73, 93
               

               
Conread position:
               
86-262
               

               
Cow position:
               
chr12:46143547-46143718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
86-263
               

               
Cow position:
               
chr12:3212051-3212223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
63, 126
               

               
Conread position:
               
86-263
               

               
Cow position:
               
chr12:32391571-32391744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
95, 123
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr12:3880530-3880349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
86-270
               

               
Cow position:
               
chr12:26223259-26223083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
86-285
               

               
Cow position:
               
chr12:5134865-5135066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 151
               

               
Conread position:
               
86-337
               

               
Cow position:
               
chr12:2242159-2241904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
180, 86
               

               
Conread position:
               
86-338
               

               
Cow position:
               
chr12:34429417-34429170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
176, 64
               

               
Conread position:
               
86-339
               

               
Cow position:
               
chr12:11583130-11583377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
173, 35
               

               
Conread position:
               
86-346
               

               
Cow position:
               
chr12:1284732-1284467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
162, 85
               

               
Conread position:
               
86-352
               

               
Cow position:
               
chr12:44014114-44013843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
86-373
               

               
Cow position:
               
chr12:43476081-43476376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
73, 127
               

               
Conread position:
               
86-381
               

               
Cow position:
               
chr12:3055863-3056168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
77, 125
               

               
Conread position:
               
86-389
               

               
Cow position:
               
chr12:17716809-17717109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
162, 73
               

               
Conread position:
               
86-390
               

               
Cow position:
               
chr12:18040865-18040563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
231, 70
               

               
Conread position:
               
86-398
               

               
Cow position:
               
chr12:18076260-18076569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
160, 79
               

               
Conread position:
               
86-398
               

               
Cow position:
               
chr12:41091255-41091586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
86-408
               

               
Cow position:
               
chr12:8869157-8868819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 118
               

               
Conread position:
               
86-408
               

               
Cow position:
               
chr12:18518397-18518736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
162, 64
               

               
Conread position:
               
86-417
               

               
Cow position:
               
chr12:30662224-30661878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr12:46314967-46314629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr12:29484164-29483810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
86-423
               

               
Cow position:
               
chr12:9229756-9229422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
203, 121
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr12:35368369-35368721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
116, 80
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr12:47928941-47929279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
210, 121
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr12:6411002-6410654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
171, 88
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr12:44518009-44517658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
156, 33
               

               
Conread position:
               
86-430
               

               
Cow position:
               
chr12:30745439-30745801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 225
               

               
Conread position:
               
86-431
               

               
Cow position:
               
chr12:6210431-6210070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
160, 116
               

               
Conread position:
               
86-439
               

               
Cow position:
               
chr12:36501226-36500852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
84, 127
               

               
Conread position:
               
86-440
               

               
Cow position:
               
chr12:6241035-6241416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
71, 232
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr12:4341994-4341646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
142, 88
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr12:42254384-42254762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
78, 135
               

               
Conread position:
               
86-444
               

               
Cow position:
               
chr12:9482573-9482206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
57, 119
               

               
Conread position:
               
86-444
               

               
Cow position:
               
chr12:9914515-9914890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 72
               

               
Conread position:
               
86-444
               

               
Cow position:
               
chr12:10895822-10895454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
71, 114
               

               
Conread position:
               
86-445
               

               
Cow position:
               
chr12:11109495-11109852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
201, 83
               

               
Conread position:
               
86-445
               

               
Cow position:
               
chr12:19502694-19502330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 120
               

               
Conread position:
               
86-446
               

               
Cow position:
               
chr12:9143119-9143489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 169
               

               
Conread position:
               
86-449
               

               
Cow position:
               
chr12:14132018-14131666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
86-449
               

               
Cow position:
               
chr12:19865969-19866344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
160, 11
               

               
Conread position:
               
86-449
               

               
Cow position:
               
chr12:29995736-29995355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
86-449
               

               
Cow position:
               
chr12:42698497-42698140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
151, 114
               

               
Conread position:
               
86-450
               

               
Cow position:
               
chr12:34007025-34007403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
86-453
               

               
Cow position:
               
chr12:4008557-4008174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
86-458
               

               
Cow position:
               
chr12:7977773-7978149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
171, 64
               

               
Conread position:
               
86-462
               

               
Cow position:
               
chr12:31959619-31959996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 92
               

               
Conread position:
               
86-488
               

               
Cow position:
               
chr12:30753454-30753868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
186, 20
               

               
Conread position:
               
86-490
               

               
Cow position:
               
chr12:25320649-25321051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 84
               

               
Conread position:
               
86-498
               

               
Cow position:
               
chr12:29969301-29969734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 180
               

               
Conread position:
               
86-511
               

               
Cow position:
               
chr12:34148625-34148189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
86-516
               

               
Cow position:
               
chr12:2286307-2286755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
71, 95
               

               
Conread position:
               
86-577
               

               
Cow position:
               
chr12:18572367-18572847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 116
               

               
Conread position:
               
86-584
               

               
Cow position:
               
chr12:40270360-40269861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
162, 54
               

               
Conread position:
               
86-597
               

               
Cow position:
               
chr12:5905783-5906307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 104
               

               
Conread position:
               
86-597
               

               
Cow position:
               
chr12:15258979-15258470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
167, 121
               

               
Conread position:
               
87-182
               

               
Cow position:
               
chr12:22285374-22285279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-195
               

               
Cow position:
               
chr12:30946558-30946666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-200
               

               
Cow position:
               
chr12:19039885-19039771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
87-230
               

               
Cow position:
               
chr12:17079985-17080134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr12:24755297-24755147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
87-250
               

               
Cow position:
               
chr12:35136246-35136406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
70, 103
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr12:18937114-18937292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr12:28011172-28011008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
87-260
               

               
Cow position:
               
chr12:19420205-19420037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
87-261
               

               
Cow position:
               
chr12:17007924-17008101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
70, 140
               

               
Conread position:
               
87-261
               

               
Cow position:
               
chr12:44766811-44766973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr12:3039241-3039400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr12:25455841-25456013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 123
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr12:37123240-37123403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
87-266
               

               
Cow position:
               
chr12:18421200-18421025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr12:4134391-4134574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
35, 125
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr12:35218678-35218501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
161, 82
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr12:41214592-41214421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
161, 16
               

               
Conread position:
               
87-268
               

               
Cow position:
               
chr12:19154884-19154711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
159, 69
               

               
Conread position:
               
87-282
               

               
Cow position:
               
chr12:31925377-31925566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-330
               

               
Cow position:
               
chr12:22047196-22047448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
72, 124
               

               
Conread position:
               
87-337
               

               
Cow position:
               
chr12:39486156-39486409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
76, 194
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr12:31060256-31059994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr12:45160785-45160530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
87-355
               

               
Cow position:
               
chr12:20326498-20326774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
87-367
               

               
Cow position:
               
chr12:23154740-23154456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
63, 123
               

               
Conread position:
               
87-384
               

               
Cow position:
               
chr12:19869198-19869501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
161, 77
               

               
Conread position:
               
87-389
               

               
Cow position:
               
chr12:22516010-22515688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 28
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr12:3076896-3076582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
63, 124
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr12:19125100-19124793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
193, 106
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr12:19508845-19508514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 126
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr12:20316780-20316486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
230, 77
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr12:26782608-26782916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr12:30728512-30728201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
69, 124
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr12:42160830-42160514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
46, 128
               

               
Conread position:
               
87-394
               

               
Cow position:
               
chr12:19664789-19664483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
161, 36
               

               
Conread position:
               
87-398
               

               
Cow position:
               
chr12:10461733-10462043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
174, 24
               

               
Conread position:
               
87-398
               

               
Cow position:
               
chr12:36118697-36119018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-400
               

               
Cow position:
               
chr12:40110116-40110426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
162, 74
               

               
Conread position:
               
87-408
               

               
Cow position:
               
chr12:44905363-44905690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 131
               

               
Conread position:
               
87-417
               

               
Cow position:
               
chr12:45814538-45814190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
59, 124
               

               
Conread position:
               
87-420
               

               
Cow position:
               
chr12:33457875-33458222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
127, 26
               

               
Conread position:
               
87-420
               

               
Cow position:
               
chr12:37770602-37770946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
85, 98
               

               
Conread position:
               
87-422
               

               
Cow position:
               
chr12:42602513-42602167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 122
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr12:18123413-18123748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
223, 111
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr12:18943917-18943578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
115, 74
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr12:26869069-26868734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr12:35310946-35310605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
190, 110
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr12:42167372-42167710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
70, 107
               

               
Conread position:
               
87-426
               

               
Cow position:
               
chr12:39465305-39465661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
65, 172
               

               
Conread position:
               
87-427
               

               
Cow position:
               
chr12:30437977-30438319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
185, 58
               

               
Conread position:
               
87-434
               

               
Cow position:
               
chr12:5714355-5714715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
117, 173
               

               
Conread position:
               
87-435
               

               
Cow position:
               
chr12:17881599-17881950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
150, 28
               

               
Conread position:
               
87-439
               

               
Cow position:
               
chr12:35771305-35770925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
87-440
               

               
Cow position:
               
chr12:41473822-41474184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
161, 69
               

               
Conread position:
               
87-440
               

               
Cow position:
               
chr12:41580843-41581208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
87-441
               

               
Cow position:
               
chr12:16359601-16359961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
140, 120
               

               
Conread position:
               
87-441
               

               
Cow position:
               
chr12:36954648-36954298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
161, 115
               

               
Conread position:
               
87-442
               

               
Cow position:
               
chr12:3950624-3950249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-442
               

               
Cow position:
               
chr12:7311135-7311478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr12:3473263-3472902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
79, 122
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr12:9710477-9710112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
161, 50
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr12:42966727-42967090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 117
               

               
Conread position:
               
87-444
               

               
Cow position:
               
chr12:40910564-40910189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 93
               

               
Conread position:
               
87-454
               

               
Cow position:
               
chr12:44596087-44595697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
87-468
               

               
Cow position:
               
chr12:18577576-18577963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
182, 95
               

               
Conread position:
               
87-475
               

               
Cow position:
               
chr12:2711219-2711627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 120
               

               
Conread position:
               
87-490
               

               
Cow position:
               
chr12:19715301-19714896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
144, 73
               

               
Conread position:
               
87-505
               

               
Cow position:
               
chr12:25805384-25804975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
13, 116
               

               
Conread position:
               
88-205
               

               
Cow position:
               
chr12:25529758-25529879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
88-228
               

               
Cow position:
               
chr12:29119627-29119765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
88-230
               

               
Cow position:
               
chr12:22132250-22132110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
88-246
               

               
Cow position:
               
chr12:33297574-33297728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 38
               

               
Conread position:
               
88-247
               

               
Cow position:
               
chr12:8922061-8921904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
88-247
               

               
Cow position:
               
chr12:34385786-34385634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
88-259
               

               
Cow position:
               
chr12:31841165-31841333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 122
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr12:40158512-40158344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 119
               

               
Conread position:
               
88-266
               

               
Cow position:
               
chr12:42181413-42181240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 110
               

               
Conread position:
               
88-267
               

               
Cow position:
               
chr12:1848810-1848631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 114
               

               
Conread position:
               
88-271
               

               
Cow position:
               
chr12:22124740-22124927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
114, 137
               

               
Conread position:
               
88-330
               

               
Cow position:
               
chr12:9465733-9465494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 123
               

               
Conread position:
               
88-347
               

               
Cow position:
               
chr12:3510292-3510553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
88-381
               

               
Cow position:
               
chr12:15938539-15938230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
77, 59
               

               
Conread position:
               
88-405
               

               
Cow position:
               
chr12:12199178-12198852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
88-422
               

               
Cow position:
               
chr12:28257318-28256978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
88-425
               

               
Cow position:
               
chr12:25561098-25561449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
74, 173
               

               
Conread position:
               
88-434
               

               
Cow position:
               
chr12:8943492-8943134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
71, 42
               

               
Conread position:
               
88-441
               

               
Cow position:
               
chr12:34332834-34333203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
114, 47
               

               
Conread position:
               
88-443
               

               
Cow position:
               
chr12:18388554-18388193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
169, 118
               

               
Conread position:
               
88-448
               

               
Cow position:
               
chr12:37993998-37993625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
71, 114
               

               
Conread position:
               
88-459
               

               
Cow position:
               
chr12:32169264-32169650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 327
               

               
Conread position:
               
89-330
               

               
Cow position:
               
chr12:46635216-46634978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
159, 114
               

               
Conread position:
               
89-448
               

               
Cow position:
               
chr12:7000863-7000504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
98, 79
               

               
Conread position:
               
89-457
               

               
Cow position:
               
chr12:12304126-12304492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
90-380
               

               
Cow position:
               
chr12:25177864-25177563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 122
               

               
Conread position:
               
90-497
               

               
Cow position:
               
chr12:27563651-27563228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
158, 51
               

               
Conread position:
               
91-259
               

               
Cow position:
               
chr12:12700044-12699874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
92-267
               

               
Cow position:
               
chr12:17702501-17702325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 118
               

               
Conread position:
               
93-207
               

               
Cow position:
               
chr12:42204057-42204171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
93-424
               

               
Cow position:
               
chr12:15122069-15122405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
104, 144
               

               
Conread position:
               
95-422
               

               
Cow position:
               
chr12:42283102-42282759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
56, 115
               

               
Conread position:
               
96-352
               

               
Cow position:
               
chr12:24107802-24107548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
108, 158
               

               
Conread position:
               
97-255
               

               
Cow position:
               
chr12:3994686-3994843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
97-267
               

               
Cow position:
               
chr12:28804730-28804899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
97-423
               

               
Cow position:
               
chr12:46333099-46333422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
148, 23
               

               
Conread position:
               
98-265
               

               
Cow position:
               
chr12:29162073-29161912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
150, 63
               

               
Conread position:
               
100-425
               

               
Cow position:
               
chr12:5635708-5635373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
72, 80
               

               
Conread position:
               
100-430
               

               
Cow position:
               
chr12:5940083-5940426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
46, 111
               

               
Conread position:
               
101-577
               

               
Cow position:
               
chr12:17774546-17775012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
159, 60
               

               
Conread position:
               
106-383
               

               
Cow position:
               
chr12:15240978-15240700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
171, 93
               

               
Conread position:
               
106-432
               

               
Cow position:
               
chr12:24024045-24023715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
142, 21
               

               
Conread position:
               
108-417
               

               
Cow position:
               
chr12:28213266-28213581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
114-418
               

               
Cow position:
               
chr12:24211170-24211482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 120
               

               
Conread position:
               
114-447
               

               
Cow position:
               
chr12:23574524-23574865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
155, 93
               

               
Conread position:
               
115-425
               

               
Cow position:
               
chr12:4093999-4093692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
116-433
               

               
Cow position:
               
chr12:15162906-15163228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
136, 90
               

               
Conread position:
               
117-389
               

               
Cow position:
               
chr12:42954137-42953856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
132, 59
               

               
Conread position:
               
117-420
               

               
Cow position:
               
chr12:34161174-34161488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
123-389
               

               
Cow position:
               
chr12:5658313-5658033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
124-390
               

               
Cow position:
               
chr12:5459027-5459294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
179, 84
               

               
Conread position:
               
124-433
               

               
Cow position:
               
chr12:18103830-18103525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 62
               

               
Conread position:
               
133-576
               

               
Cow position:
               
chr12:3906241-3906691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
135-267
               

               
Cow position:
               
chr12:38512067-38511935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
113, 72
               

               
Conread position:
               
135-458
               

               
Cow position:
               
chr12:4596224-4596575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
24, 188
               

               
Conread position:
               
151-421
               

               
Cow position:
               
chr12:45680062-45680353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 170
               

               
Conread position:
               
151-425
               

               
Cow position:
               
chr12:30210273-30210563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 161
               

               
Conread position:
               
154-425
               

               
Cow position:
               
chr12:2805250-2804995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 53
               

               
Conread position:
               
212-446
               

               
Cow position:
               
chr12:38774395-38774143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 234
               

               
Conread position:
               
224-511
               

               
Cow position:
               
chr12:7110056-7110358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
228-584
               

               
Cow position:
               
chr12:2661537-2661197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
266-442
               

               
Cow position:
               
chr12:10942201-10942386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
288-489
               

               
Cow position:
               
chr12:4797237-4797443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
290-437
               

               
Cow position:
               
chr12:43854832-43854986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
300-451
               

               
Cow position:
               
chr12:23764441-23764592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
300-598
               

               
Cow position:
               
chr12:7920189-7920491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 134
               

               
Conread position:
               
303-478
               

               
Cow position:
               
chr12:7457593-7457413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
10, 129
               

               
Conread position:
               
351-591
               

               
Cow position:
               
chr12:7514819-7515052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
154, 78
               

               
Conread position:
               
445-595
               

               
Cow position:
               
chr12:33129283-33129436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               
Show alignments to all cow chromosomes.