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Cow genome map

           
Conread name:
           
Ss1.1-rsag038_l19.5
        

               
Conread position:
               
39-431
               

               
Cow position:
               
chr21:30990492-30990099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
40-253
               

               
Cow position:
               
chr21:2785995-2785789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
124, 23
               

               
Conread position:
               
55-443
               

               
Cow position:
               
chr21:17193960-17193553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
205, 14
               

               
Conread position:
               
62-330
               

               
Cow position:
               
chr21:5137688-5137407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 147
               

               
Conread position:
               
62-577
               

               
Cow position:
               
chr21:18780170-18779642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
18, 128
               

               
Conread position:
               
68-322
               

               
Cow position:
               
chr21:21480373-21480112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
68-457
               

               
Cow position:
               
chr21:47764306-47763901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
70-200
               

               
Cow position:
               
chr21:18713094-18713225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
71-338
               

               
Cow position:
               
chr21:6102454-6102173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 125
               

               
Conread position:
               
72-451
               

               
Cow position:
               
chr21:26244743-26245124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
73-443
               

               
Cow position:
               
chr21:25344689-25345059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 81
               

               
Conread position:
               
73-445
               

               
Cow position:
               
chr21:3585545-3585167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
73-449
               

               
Cow position:
               
chr21:13163704-13164067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
7, 103
               

               
Conread position:
               
74-425
               

               
Cow position:
               
chr21:30592491-30592127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
9, 241
               

               
Conread position:
               
77-250
               

               
Cow position:
               
chr21:11456990-11456826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
6, 27
               

               
Conread position:
               
77-443
               

               
Cow position:
               
chr21:21169676-21169298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
77, 107
               

               
Conread position:
               
80-205
               

               
Cow position:
               
chr21:24130901-24131027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
80-262
               

               
Cow position:
               
chr21:47861016-47861194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 129
               

               
Conread position:
               
83-259
               

               
Cow position:
               
chr21:48484619-48484454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
83-262
               

               
Cow position:
               
chr21:1464053-1464227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
83-344
               

               
Cow position:
               
chr21:39450346-39450068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 130
               

               
Conread position:
               
83-348
               

               
Cow position:
               
chr21:12961077-12960799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
83-424
               

               
Cow position:
               
chr21:13898013-13898346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
165, 78
               

               
Conread position:
               
83-425
               

               
Cow position:
               
chr21:23322259-23321896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
79, 128
               

               
Conread position:
               
83-433
               

               
Cow position:
               
chr21:27521503-27521149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
169, 32
               

               
Conread position:
               
83-452
               

               
Cow position:
               
chr21:44826057-44825678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
165, 13
               

               
Conread position:
               
83-463
               

               
Cow position:
               
chr21:12801922-12801525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
150, 119
               

               
Conread position:
               
83-511
               

               
Cow position:
               
chr21:27569336-27568907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
78, 155
               

               
Conread position:
               
83-599
               

               
Cow position:
               
chr21:2927381-2926856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
84-443
               

               
Cow position:
               
chr21:13128268-13127899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
173, 120
               

               
Conread position:
               
85-247
               

               
Cow position:
               
chr21:34658861-34659015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
85-266
               

               
Cow position:
               
chr21:28443551-28443374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
72, 121
               

               
Conread position:
               
85-267
               

               
Cow position:
               
chr21:3236357-3236527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
163, 53
               

               
Conread position:
               
85-397
               

               
Cow position:
               
chr21:9028447-9028770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
85-425
               

               
Cow position:
               
chr21:41579576-41579938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
85-435
               

               
Cow position:
               
chr21:33210025-33210377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
72, 117
               

               
Conread position:
               
85-439
               

               
Cow position:
               
chr21:13585233-13584865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 65
               

               
Conread position:
               
85-445
               

               
Cow position:
               
chr21:6051333-6051701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
91, 118
               

               
Conread position:
               
85-454
               

               
Cow position:
               
chr21:44565875-44565512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
14, 58
               

               
Conread position:
               
85-497
               

               
Cow position:
               
chr21:24858138-24858569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
72, 205
               

               
Conread position:
               
86-200
               

               
Cow position:
               
chr21:28919797-28919680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr21:29942835-29942953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr21:31278607-31278725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr21:35997001-35997120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-229
               

               
Cow position:
               
chr21:17282531-17282676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
86-240
               

               
Cow position:
               
chr21:35897310-35897456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr21:31159084-31159244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr21:40058634-40058786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
86-259
               

               
Cow position:
               
chr21:27743570-27743740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
86-261
               

               
Cow position:
               
chr21:7716963-7716785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
86-262
               

               
Cow position:
               
chr21:13488347-13488518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
77, 96
               

               
Conread position:
               
86-266
               

               
Cow position:
               
chr21:42913918-42913741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 118
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr21:912139-911962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
162, 117
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr21:3381253-3381078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
110, 11
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr21:27124299-27124121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 123
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr21:37361640-37361471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
162, 75
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr21:42145745-42145918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
77, 123
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr21:42464016-42463829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 131
               

               
Conread position:
               
86-270
               

               
Cow position:
               
chr21:41957346-41957168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
163, 65
               

               
Conread position:
               
86-338
               

               
Cow position:
               
chr21:363483-363721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
91, 41
               

               
Conread position:
               
86-342
               

               
Cow position:
               
chr21:24222710-24222445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
86-342
               

               
Cow position:
               
chr21:47802432-47802167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
103, 119
               

               
Conread position:
               
86-357
               

               
Cow position:
               
chr21:5636893-5636616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 119
               

               
Conread position:
               
86-363
               

               
Cow position:
               
chr21:3813655-3813370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 121
               

               
Conread position:
               
86-378
               

               
Cow position:
               
chr21:28512360-28512649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
162, 116
               

               
Conread position:
               
86-378
               

               
Cow position:
               
chr21:46143771-46144094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
86-389
               

               
Cow position:
               
chr21:35897798-35897480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
165, 81
               

               
Conread position:
               
86-390
               

               
Cow position:
               
chr21:33729262-33729577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
163, 78
               

               
Conread position:
               
86-392
               

               
Cow position:
               
chr21:45330780-45330458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
86-393
               

               
Cow position:
               
chr21:30607260-30606936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
162, 89
               

               
Conread position:
               
86-393
               

               
Cow position:
               
chr21:34391142-34390825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
162, 11
               

               
Conread position:
               
86-395
               

               
Cow position:
               
chr21:15911228-15911552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
118, 72
               

               
Conread position:
               
86-408
               

               
Cow position:
               
chr21:9710876-9710567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
86-417
               

               
Cow position:
               
chr21:3763910-3763569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
69, 85
               

               
Conread position:
               
86-417
               

               
Cow position:
               
chr21:30849111-30848767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr21:5566817-5567163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 112
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr21:19196339-19195985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
66, 119
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr21:37706579-37706237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr21:40133983-40134336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
18, 126
               

               
Conread position:
               
86-423
               

               
Cow position:
               
chr21:4399627-4399983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
166, 78
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr21:802466-802136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
186, 64
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr21:26648178-26647835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr21:33982981-33982628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
71, 180
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr21:38120935-38121282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
179, 84
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr21:23586704-23587063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
71, 120
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr21:38449624-38449267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
66, 98
               

               
Conread position:
               
86-427
               

               
Cow position:
               
chr21:34738426-34738762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
69, 218
               

               
Conread position:
               
86-428
               

               
Cow position:
               
chr21:27146164-27145806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
86, 117
               

               
Conread position:
               
86-433
               

               
Cow position:
               
chr21:32237125-32237473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 96
               

               
Conread position:
               
86-433
               

               
Cow position:
               
chr21:40589655-40589292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 175
               

               
Conread position:
               
86-435
               

               
Cow position:
               
chr21:46849295-46848937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
160, 91
               

               
Conread position:
               
86-436
               

               
Cow position:
               
chr21:14760408-14760759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
163, 64
               

               
Conread position:
               
86-439
               

               
Cow position:
               
chr21:5153445-5153816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 347
               

               
Conread position:
               
86-442
               

               
Cow position:
               
chr21:9990342-9990711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
86-442
               

               
Cow position:
               
chr21:13365172-13365541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
88, 149
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr21:15445251-15444887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
86, 122
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr21:17183750-17184115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
163, 27
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr21:18568822-18568442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 93
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr21:32339909-32339542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 65
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr21:45473929-45473555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
136, 112
               

               
Conread position:
               
86-444
               

               
Cow position:
               
chr21:9416070-9416448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
86-444
               

               
Cow position:
               
chr21:37299295-37299663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
35, 120
               

               
Conread position:
               
86-445
               

               
Cow position:
               
chr21:28734084-28733713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
118, 173
               

               
Conread position:
               
86-445
               

               
Cow position:
               
chr21:28989443-28989815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
86-445
               

               
Cow position:
               
chr21:33263677-33264042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
86-446
               

               
Cow position:
               
chr21:11645141-11644762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
162, 89
               

               
Conread position:
               
86-446
               

               
Cow position:
               
chr21:31253364-31253736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
48, 128
               

               
Conread position:
               
86-448
               

               
Cow position:
               
chr21:22718953-22718581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
90, 122
               

               
Conread position:
               
86-449
               

               
Cow position:
               
chr21:41974551-41974170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
71, 120
               

               
Conread position:
               
86-453
               

               
Cow position:
               
chr21:18790728-18790354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
162, 69
               

               
Conread position:
               
86-462
               

               
Cow position:
               
chr21:42384333-42384728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
67, 125
               

               
Conread position:
               
86-463
               

               
Cow position:
               
chr21:44671581-44671968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
71, 120
               

               
Conread position:
               
86-482
               

               
Cow position:
               
chr21:33350570-33350976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
86-500
               

               
Cow position:
               
chr21:24598489-24598920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
116, 171
               

               
Conread position:
               
86-509
               

               
Cow position:
               
chr21:4282040-4281617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
174, 75
               

               
Conread position:
               
86-531
               

               
Cow position:
               
chr21:2679380-2679835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
75, 117
               

               
Conread position:
               
86-536
               

               
Cow position:
               
chr21:33562843-33563282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 33
               

               
Conread position:
               
86-584
               

               
Cow position:
               
chr21:28881970-28882455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
162, 70
               

               
Conread position:
               
86-598
               

               
Cow position:
               
chr21:28190856-28191370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
71, 229
               

               
Conread position:
               
87-193
               

               
Cow position:
               
chr21:45263193-45263087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-197
               

               
Cow position:
               
chr21:42465658-42465772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
87-200
               

               
Cow position:
               
chr21:20262505-20262391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
87-200
               

               
Cow position:
               
chr21:23150191-23150079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
87-200
               

               
Cow position:
               
chr21:46132149-46132036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr21:1510902-1511016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr21:12616968-12617084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr21:20162364-20162485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr21:28907815-28907700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
87-237
               

               
Cow position:
               
chr21:28029226-28029385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
87-244
               

               
Cow position:
               
chr21:20044943-20044789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
87-245
               

               
Cow position:
               
chr21:34254453-34254300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr21:5649735-5649889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr21:22194282-22194131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr21:39403710-39403555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
69, 91
               

               
Conread position:
               
87-250
               

               
Cow position:
               
chr21:26241653-26241812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 120
               

               
Conread position:
               
87-255
               

               
Cow position:
               
chr21:4268702-4268865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr21:7564493-7564324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr21:9278201-9278374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
70, 121
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr21:36163134-36162967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-260
               

               
Cow position:
               
chr21:33419886-33419727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
87-261
               

               
Cow position:
               
chr21:10151623-10151794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
159, 96
               

               
Conread position:
               
87-261
               

               
Cow position:
               
chr21:31676327-31676494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr21:32535805-32535971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
87-266
               

               
Cow position:
               
chr21:18494794-18494973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
71, 119
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr21:3498327-3498503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
162, 69
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr21:8985378-8985551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
159, 95
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr21:18828481-18828306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 119
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr21:40786499-40786683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-270
               

               
Cow position:
               
chr21:393850-394027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
87-338
               

               
Cow position:
               
chr21:8351475-8351223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
87-338
               

               
Cow position:
               
chr21:24607214-24607474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
71, 119
               

               
Conread position:
               
87-338
               

               
Cow position:
               
chr21:31277650-31277898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
200, 28
               

               
Conread position:
               
87-343
               

               
Cow position:
               
chr21:6764873-6764607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
87-377
               

               
Cow position:
               
chr21:24765112-24765408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 88
               

               
Conread position:
               
87-383
               

               
Cow position:
               
chr21:46777144-46776860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
230, 49
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr21:4080183-4080495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr21:12366216-12366518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
185, 120
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr21:13048368-13048046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
159, 120
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr21:24094915-24094613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 41
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr21:40899165-40899486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 124
               

               
Conread position:
               
87-392
               

               
Cow position:
               
chr21:29214320-29214011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
143, 74
               

               
Conread position:
               
87-392
               

               
Cow position:
               
chr21:42540391-42540073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
67, 31
               

               
Conread position:
               
87-397
               

               
Cow position:
               
chr21:17174971-17175289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 124
               

               
Conread position:
               
87-397
               

               
Cow position:
               
chr21:29979927-29979616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
157, 78
               

               
Conread position:
               
87-397
               

               
Cow position:
               
chr21:41878305-41878623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
158, 41
               

               
Conread position:
               
87-398
               

               
Cow position:
               
chr21:11706923-11706612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-404
               

               
Cow position:
               
chr21:39664560-39664235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
168, 120
               

               
Conread position:
               
87-405
               

               
Cow position:
               
chr21:1483318-1483641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-412
               

               
Cow position:
               
chr21:19258655-19258987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
87-415
               

               
Cow position:
               
chr21:33791539-33791210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
161, 73
               

               
Conread position:
               
87-420
               

               
Cow position:
               
chr21:42348849-42348518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
87-420
               

               
Cow position:
               
chr21:45330112-45329773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
171, 37
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr21:7582081-7581724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
75, 119
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr21:22860830-22861180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
117, 78
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr21:27863691-27863333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
70, 123
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr21:20160512-20160858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
121, 169
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr21:29069500-29069144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
179, 145
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr21:44251997-44251661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
170, 85
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr21:45850882-45850525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
117, 175
               

               
Conread position:
               
87-431
               

               
Cow position:
               
chr21:21077159-21077495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
87-431
               

               
Cow position:
               
chr21:38900602-38900961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 125
               

               
Conread position:
               
87-432
               

               
Cow position:
               
chr21:27229966-27229606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
99, 116
               

               
Conread position:
               
87-433
               

               
Cow position:
               
chr21:10118382-10118755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
69, 124
               

               
Conread position:
               
87-434
               

               
Cow position:
               
chr21:81899-82259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-434
               

               
Cow position:
               
chr21:15976470-15976822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
157, 41
               

               
Conread position:
               
87-435
               

               
Cow position:
               
chr21:41597644-41598004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-436
               

               
Cow position:
               
chr21:45971329-45970980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
162, 74
               

               
Conread position:
               
87-440
               

               
Cow position:
               
chr21:37345273-37344905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
87-442
               

               
Cow position:
               
chr21:8618103-8618461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
159, 113
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr21:14464406-14464781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
70, 8
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr21:24296936-24296570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
182, 69
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr21:25127437-25127802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr21:28027632-28027994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr21:38918043-38918397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
157, 120
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr21:45151794-45151430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
159, 111
               

               
Conread position:
               
87-451
               

               
Cow position:
               
chr21:1058905-1059283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
85, 121
               

               
Conread position:
               
87-452
               

               
Cow position:
               
chr21:33550-33931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
161, 94
               

               
Conread position:
               
87-457
               

               
Cow position:
               
chr21:29484812-29485192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 85
               

               
Conread position:
               
87-491
               

               
Cow position:
               
chr21:49700207-49699794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
149, 120
               

               
Conread position:
               
87-495
               

               
Cow position:
               
chr21:14452058-14452484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
88-231
               

               
Cow position:
               
chr21:18979016-18978873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
84, 54
               

               
Conread position:
               
88-238
               

               
Cow position:
               
chr21:426619-426772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
88-247
               

               
Cow position:
               
chr21:36642737-36642888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
88-259
               

               
Cow position:
               
chr21:712764-712920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
88-259
               

               
Cow position:
               
chr21:4189664-4189829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
88-261
               

               
Cow position:
               
chr21:19937103-19936935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
103, 99
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr21:9998891-9998721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr21:20925677-20925510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
88-267
               

               
Cow position:
               
chr21:42500862-42501044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
69, 124
               

               
Conread position:
               
88-384
               

               
Cow position:
               
chr21:19363634-19363318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
69, 91
               

               
Conread position:
               
88-385
               

               
Cow position:
               
chr21:7132633-7132344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 106
               

               
Conread position:
               
88-392
               

               
Cow position:
               
chr21:7672962-7673269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 83
               

               
Conread position:
               
88-413
               

               
Cow position:
               
chr21:28955352-28955671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
60, 73
               

               
Conread position:
               
88-431
               

               
Cow position:
               
chr21:725062-724703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
69, 120
               

               
Conread position:
               
88-443
               

               
Cow position:
               
chr21:19958052-19958411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
175, 77
               

               
Conread position:
               
88-443
               

               
Cow position:
               
chr21:30231872-30231501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
88-470
               

               
Cow position:
               
chr21:395705-396099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
160, 59
               

               
Conread position:
               
88-513
               

               
Cow position:
               
chr21:42135794-42135339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
74, 177
               

               
Conread position:
               
88-536
               

               
Cow position:
               
chr21:17643140-17642699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
89-244
               

               
Cow position:
               
chr21:9334428-9334282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
89-267
               

               
Cow position:
               
chr21:13409992-13409819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 122
               

               
Conread position:
               
89-389
               

               
Cow position:
               
chr21:13303650-13303938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
224, 68
               

               
Conread position:
               
89-389
               

               
Cow position:
               
chr21:43357430-43357110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
89-390
               

               
Cow position:
               
chr21:5595492-5595793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
89-392
               

               
Cow position:
               
chr21:24887839-24888147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 122
               

               
Conread position:
               
89-392
               

               
Cow position:
               
chr21:45915873-45915569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
89-420
               

               
Cow position:
               
chr21:23535547-23535886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
136, 54
               

               
Conread position:
               
89-423
               

               
Cow position:
               
chr21:5426774-5427118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
159, 67
               

               
Conread position:
               
89-423
               

               
Cow position:
               
chr21:25764465-25764815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 113
               

               
Conread position:
               
89-425
               

               
Cow position:
               
chr21:24797523-24797836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
255, 59
               

               
Conread position:
               
89-489
               

               
Cow position:
               
chr21:13738399-13738805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
66, 23
               

               
Conread position:
               
90-234
               

               
Cow position:
               
chr21:30626354-30626211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 121
               

               
Conread position:
               
90-263
               

               
Cow position:
               
chr21:10823387-10823564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
90-346
               

               
Cow position:
               
chr21:38867744-38867491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
90-400
               

               
Cow position:
               
chr21:4998655-4998338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
100, 116
               

               
Conread position:
               
90-424
               

               
Cow position:
               
chr21:10000912-10001256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
162, 42
               

               
Conread position:
               
90-426
               

               
Cow position:
               
chr21:28211028-28211374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 117
               

               
Conread position:
               
92-359
               

               
Cow position:
               
chr21:6765714-6765977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
165, 78
               

               
Conread position:
               
92-441
               

               
Cow position:
               
chr21:12153968-12154326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 118
               

               
Conread position:
               
93-259
               

               
Cow position:
               
chr21:5344490-5344651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
96-422
               

               
Cow position:
               
chr21:15584573-15584240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
6, 28
               

               
Conread position:
               
97-259
               

               
Cow position:
               
chr21:28617429-28617582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
97-434
               

               
Cow position:
               
chr21:15610990-15611331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
107, 159
               

               
Conread position:
               
97-440
               

               
Cow position:
               
chr21:937879-938214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
160, 10
               

               
Conread position:
               
97-443
               

               
Cow position:
               
chr21:47760614-47760966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
97-594
               

               
Cow position:
               
chr21:39401433-39401924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 110
               

               
Conread position:
               
97-595
               

               
Cow position:
               
chr21:27624551-27625031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
152, 22
               

               
Conread position:
               
98-449
               

               
Cow position:
               
chr21:32297671-32297311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
66, 113
               

               
Conread position:
               
99-343
               

               
Cow position:
               
chr21:43631362-43631132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 107
               

               
Conread position:
               
100-443
               

               
Cow position:
               
chr21:13840164-13840523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
77, 38
               

               
Conread position:
               
105-521
               

               
Cow position:
               
chr21:10633794-10633365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 94
               

               
Conread position:
               
106-463
               

               
Cow position:
               
chr21:24642366-24642728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
106-463
               

               
Cow position:
               
chr21:45921211-45920833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
138, 87
               

               
Conread position:
               
108-262
               

               
Cow position:
               
chr21:45439400-45439243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
112-262
               

               
Cow position:
               
chr21:47009386-47009240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
112-459
               

               
Cow position:
               
chr21:10005032-10004672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
115-441
               

               
Cow position:
               
chr21:29978907-29978563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 100
               

               
Conread position:
               
116-452
               

               
Cow position:
               
chr21:13089610-13089267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
133, 37
               

               
Conread position:
               
118-387
               

               
Cow position:
               
chr21:11250725-11251013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
39, 187
               

               
Conread position:
               
122-384
               

               
Cow position:
               
chr21:12462107-12461825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
29, 81
               

               
Conread position:
               
123-444
               

               
Cow position:
               
chr21:20152812-20153155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
125, 84
               

               
Conread position:
               
123-445
               

               
Cow position:
               
chr21:28923981-28924308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
149, 57
               

               
Conread position:
               
133-443
               

               
Cow position:
               
chr21:27810279-27810587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
162-380
               

               
Cow position:
               
chr21:22121426-22121642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 45
               

               
Conread position:
               
175-387
               

               
Cow position:
               
chr21:41107845-41107624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
177-512
               

               
Cow position:
               
chr21:30256350-30256004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
210-443
               

               
Cow position:
               
chr21:868981-868724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 233
               

               
Conread position:
               
212-448
               

               
Cow position:
               
chr21:36909881-36910136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 99
               

               
Conread position:
               
259-597
               

               
Cow position:
               
chr21:26567771-26567437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 167
               

               
Conread position:
               
266-543
               

               
Cow position:
               
chr21:17695643-17695371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
272-451
               

               
Cow position:
               
chr21:42463664-42463488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
129, 20
               

               
Conread position:
               
275-536
               

               
Cow position:
               
chr21:734617-734878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
288-441
               

               
Cow position:
               
chr21:31159441-31159595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
288-577
               

               
Cow position:
               
chr21:30119733-30120012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
291-445
               

               
Cow position:
               
chr21:36508280-36508436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
303-511
               

               
Cow position:
               
chr21:19360124-19359908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
10, 131
               

               
Conread position:
               
349-511
               

               
Cow position:
               
chr21:5137099-5136941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
120, 70
               

               
Conread position:
               
428-595
               

               
Cow position:
               
chr21:10812274-10812449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
436-591
               

               
Cow position:
               
chr21:13584931-13584771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
25, 6
               

               
Conread position:
               
445-584
               

               
Cow position:
               
chr21:30145495-30145361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               
Show alignments to all cow chromosomes.