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Cow genome map

           
Conread name:
           
Ss1.1-rsag038_l19.5
        

               
Conread position:
               
36-267
               

               
Cow position:
               
chr3:56704844-56704626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr3:2334972-2335140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
39-359
               

               
Cow position:
               
chr3:48269559-48269885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
54-267
               

               
Cow position:
               
chr3:22820279-22820486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
194, 38
               

               
Conread position:
               
57-417
               

               
Cow position:
               
chr3:8733628-8733273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
35, 52
               

               
Conread position:
               
58-250
               

               
Cow position:
               
chr3:83201820-83201627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 153
               

               
Conread position:
               
58-481
               

               
Cow position:
               
chr3:59621931-59621500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
36, 143
               

               
Conread position:
               
60-415
               

               
Cow position:
               
chr3:5374046-5374412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
20, 127
               

               
Conread position:
               
60-423
               

               
Cow position:
               
chr3:27940413-27940051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
62-434
               

               
Cow position:
               
chr3:61143809-61144198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
24, 148
               

               
Conread position:
               
62-452
               

               
Cow position:
               
chr3:58540817-58540403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
18, 143
               

               
Conread position:
               
67-250
               

               
Cow position:
               
chr3:28692709-28692535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
67-267
               

               
Cow position:
               
chr3:81401582-81401389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
67-383
               

               
Cow position:
               
chr3:65800313-65800637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 196
               

               
Conread position:
               
67-415
               

               
Cow position:
               
chr3:68708283-68707929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
13, 53
               

               
Conread position:
               
67-424
               

               
Cow position:
               
chr3:50768397-50768773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 146
               

               
Conread position:
               
67-441
               

               
Cow position:
               
chr3:28898504-28898114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 142
               

               
Conread position:
               
71-262
               

               
Cow position:
               
chr3:59701737-59701918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
75-425
               

               
Cow position:
               
chr3:8060861-8061219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 76
               

               
Conread position:
               
76-259
               

               
Cow position:
               
chr3:23269831-23270004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
79-276
               

               
Cow position:
               
chr3:82020110-82019916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 121
               

               
Conread position:
               
79-420
               

               
Cow position:
               
chr3:51234362-51234007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 88
               

               
Conread position:
               
80-420
               

               
Cow position:
               
chr3:16333541-16333888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
169, 95
               

               
Conread position:
               
81-197
               

               
Cow position:
               
chr3:56161043-56161160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
81-424
               

               
Cow position:
               
chr3:52607919-52608275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
82, 125
               

               
Conread position:
               
82-434
               

               
Cow position:
               
chr3:31771435-31771780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
170, 95
               

               
Conread position:
               
83-195
               

               
Cow position:
               
chr3:41053549-41053663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
74, 10
               

               
Conread position:
               
83-247
               

               
Cow position:
               
chr3:24639325-24639487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
74, 128
               

               
Conread position:
               
83-247
               

               
Cow position:
               
chr3:33693387-33693544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
74, 117
               

               
Conread position:
               
83-262
               

               
Cow position:
               
chr3:8147928-8147759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
83-267
               

               
Cow position:
               
chr3:52650794-52650613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
83-327
               

               
Cow position:
               
chr3:70333738-70333492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
165, 92
               

               
Conread position:
               
83-415
               

               
Cow position:
               
chr3:68881374-68881038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
83-425
               

               
Cow position:
               
chr3:4049948-4050287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
163, 47
               

               
Conread position:
               
83-425
               

               
Cow position:
               
chr3:24935091-24935458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
83-463
               

               
Cow position:
               
chr3:3032133-3032539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
62, 45
               

               
Conread position:
               
83-494
               

               
Cow position:
               
chr3:59392372-59391966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
75, 128
               

               
Conread position:
               
84-346
               

               
Cow position:
               
chr3:18763633-18763898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
181, 71
               

               
Conread position:
               
84-361
               

               
Cow position:
               
chr3:42177897-42178183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
164, 105
               

               
Conread position:
               
85-247
               

               
Cow position:
               
chr3:36657030-36656875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
85-247
               

               
Cow position:
               
chr3:44535025-44534866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
85-259
               

               
Cow position:
               
chr3:15192303-15192474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 116
               

               
Conread position:
               
85-408
               

               
Cow position:
               
chr3:56631-56300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
62, 90
               

               
Conread position:
               
85-420
               

               
Cow position:
               
chr3:13577446-13577113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
213, 122
               

               
Conread position:
               
85-437
               

               
Cow position:
               
chr3:67744888-67744523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 127
               

               
Conread position:
               
85-441
               

               
Cow position:
               
chr3:59473852-59474233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
117, 76
               

               
Conread position:
               
85-443
               

               
Cow position:
               
chr3:37041167-37041528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
146, 88
               

               
Conread position:
               
85-443
               

               
Cow position:
               
chr3:49482966-49482605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
178, 18
               

               
Conread position:
               
85-443
               

               
Cow position:
               
chr3:71497405-71497026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
74, 101
               

               
Conread position:
               
85-446
               

               
Cow position:
               
chr3:83455412-83455037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 132
               

               
Conread position:
               
85-485
               

               
Cow position:
               
chr3:12712183-12711758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 116
               

               
Conread position:
               
86-199
               

               
Cow position:
               
chr3:50329334-50329221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-200
               

               
Cow position:
               
chr3:4332104-4332222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
86-200
               

               
Cow position:
               
chr3:9638852-9638739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
86-200
               

               
Cow position:
               
chr3:30907893-30907780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr3:2903549-2903430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr3:18607110-18607233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr3:48900761-48900642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 38
               

               
Conread position:
               
86-205
               

               
Cow position:
               
chr3:66885297-66885174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
86-230
               

               
Cow position:
               
chr3:21302689-21302544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
118, 65
               

               
Conread position:
               
86-244
               

               
Cow position:
               
chr3:22908093-22907940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
86-245
               

               
Cow position:
               
chr3:52147939-52147778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr3:28939173-28939012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 90
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr3:61678432-61678588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 90
               

               
Conread position:
               
86-247
               

               
Cow position:
               
chr3:78201008-78201165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
72, 120
               

               
Conread position:
               
86-250
               

               
Cow position:
               
chr3:65020075-65020233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
86, 121
               

               
Conread position:
               
86-253
               

               
Cow position:
               
chr3:61262544-61262702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
86-255
               

               
Cow position:
               
chr3:17952397-17952558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
86-255
               

               
Cow position:
               
chr3:52017498-52017670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
86-259
               

               
Cow position:
               
chr3:11640175-11640339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
150, 89
               

               
Conread position:
               
86-259
               

               
Cow position:
               
chr3:79220591-79220760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
86-259
               

               
Cow position:
               
chr3:83816052-83815884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
66, 117
               

               
Conread position:
               
86-261
               

               
Cow position:
               
chr3:46161104-46160933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
146, 121
               

               
Conread position:
               
86-262
               

               
Cow position:
               
chr3:51609557-51609730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
71, 124
               

               
Conread position:
               
86-262
               

               
Cow position:
               
chr3:55085443-55085268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
93, 121
               

               
Conread position:
               
86-262
               

               
Cow position:
               
chr3:63861160-63860982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
86-265
               

               
Cow position:
               
chr3:71430471-71430291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 119
               

               
Conread position:
               
86-266
               

               
Cow position:
               
chr3:72156-72330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
86-266
               

               
Cow position:
               
chr3:4457335-4457156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr3:19789378-19789197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
103, 122
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr3:22872311-22872129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
162, 121
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr3:29807203-29807383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
71, 97
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr3:42588090-42588275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
86, 94
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr3:46350400-46350588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr3:53903927-53904097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
160, 116
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr3:73590257-73590081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
162, 25
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chr3:79208262-79208080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
71, 116
               

               
Conread position:
               
86-270
               

               
Cow position:
               
chr3:58383709-58383887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
165, 116
               

               
Conread position:
               
86-270
               

               
Cow position:
               
chr3:70895787-70895967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 120
               

               
Conread position:
               
86-277
               

               
Cow position:
               
chr3:83988222-83988411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
79, 67
               

               
Conread position:
               
86-333
               

               
Cow position:
               
chr3:5416490-5416225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 127
               

               
Conread position:
               
86-337
               

               
Cow position:
               
chr3:48923772-48923522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
76, 119
               

               
Conread position:
               
86-340
               

               
Cow position:
               
chr3:48530378-48530637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
118, 220
               

               
Conread position:
               
86-341
               

               
Cow position:
               
chr3:74499965-74500246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
86-342
               

               
Cow position:
               
chr3:59514852-59515108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
162, 81
               

               
Conread position:
               
86-342
               

               
Cow position:
               
chr3:84000353-84000617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
150, 120
               

               
Conread position:
               
86-343
               

               
Cow position:
               
chr3:43528496-43528232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
118, 169
               

               
Conread position:
               
86-347
               

               
Cow position:
               
chr3:17451193-17450928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
64, 167
               

               
Conread position:
               
86-348
               

               
Cow position:
               
chr3:60892373-60892632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
139, 121
               

               
Conread position:
               
86-350
               

               
Cow position:
               
chr3:19006408-19006662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
215, 75
               

               
Conread position:
               
86-373
               

               
Cow position:
               
chr3:80973094-80973395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 124
               

               
Conread position:
               
86-376
               

               
Cow position:
               
chr3:80818470-80818762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
173, 32
               

               
Conread position:
               
86-378
               

               
Cow position:
               
chr3:83920939-83921231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 120
               

               
Conread position:
               
86-379
               

               
Cow position:
               
chr3:73759776-73759469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
86-380
               

               
Cow position:
               
chr3:17957208-17957516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
160, 25
               

               
Conread position:
               
86-380
               

               
Cow position:
               
chr3:69750959-69750662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
186, 66
               

               
Conread position:
               
86-383
               

               
Cow position:
               
chr3:4031709-4032015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 233
               

               
Conread position:
               
86-384
               

               
Cow position:
               
chr3:10347096-10347404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
162, 116
               

               
Conread position:
               
86-384
               

               
Cow position:
               
chr3:18393643-18393341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
162, 70
               

               
Conread position:
               
86-384
               

               
Cow position:
               
chr3:66610097-66609791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
162, 61
               

               
Conread position:
               
86-390
               

               
Cow position:
               
chr3:20129683-20129994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
162, 121
               

               
Conread position:
               
86-395
               

               
Cow position:
               
chr3:5096945-5097271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 79
               

               
Conread position:
               
86-395
               

               
Cow position:
               
chr3:44861567-44861248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 125
               

               
Conread position:
               
86-395
               

               
Cow position:
               
chr3:55124537-55124216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
118, 169
               

               
Conread position:
               
86-397
               

               
Cow position:
               
chr3:39066074-39066398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 122
               

               
Conread position:
               
86-399
               

               
Cow position:
               
chr3:72018860-72019184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
162, 75
               

               
Conread position:
               
86-400
               

               
Cow position:
               
chr3:57763964-57764287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
83, 120
               

               
Conread position:
               
86-400
               

               
Cow position:
               
chr3:72675828-72676160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
78, 121
               

               
Conread position:
               
86-408
               

               
Cow position:
               
chr3:15158782-15159108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
215, 143
               

               
Conread position:
               
86-408
               

               
Cow position:
               
chr3:17937098-17936762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
78, 161
               

               
Conread position:
               
86-408
               

               
Cow position:
               
chr3:58969155-58968826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
166, 64
               

               
Conread position:
               
86-414
               

               
Cow position:
               
chr3:77365553-77365206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
86-417
               

               
Cow position:
               
chr3:17895595-17895934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
188, 52
               

               
Conread position:
               
86-417
               

               
Cow position:
               
chr3:49382693-49383035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
173, 89
               

               
Conread position:
               
86-417
               

               
Cow position:
               
chr3:55190010-55189667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr3:18459779-18459439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
171, 92
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr3:59588260-59588599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
159, 116
               

               
Conread position:
               
86-420
               

               
Cow position:
               
chr3:62826882-62826527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 120
               

               
Conread position:
               
86-421
               

               
Cow position:
               
chr3:80581412-80581745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 78
               

               
Conread position:
               
86-421
               

               
Cow position:
               
chr3:82460925-82461269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
162, 52
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr3:15229078-15228732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
169, 78
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr3:23876739-23877091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
162, 75
               

               
Conread position:
               
86-422
               

               
Cow position:
               
chr3:73394857-73395207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
73, 120
               

               
Conread position:
               
86-423
               

               
Cow position:
               
chr3:48362824-48363164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
86-423
               

               
Cow position:
               
chr3:54945866-54946223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr3:210064-210412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
165, 70
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr3:30179824-30180179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
165, 89
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr3:70565997-70565644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
162, 120
               

               
Conread position:
               
86-424
               

               
Cow position:
               
chr3:75080507-75080853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
71, 127
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr3:7338033-7337690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
67, 141
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr3:14552619-14552969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 116
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr3:33253140-33252795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 121
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr3:53150068-53150425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
71, 108
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr3:53739449-53739091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
169, 90
               

               
Conread position:
               
86-425
               

               
Cow position:
               
chr3:67704281-67704640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
77, 116
               

               
Conread position:
               
86-426
               

               
Cow position:
               
chr3:45647417-45647775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 125
               

               
Conread position:
               
86-429
               

               
Cow position:
               
chr3:73764452-73764104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 17
               

               
Conread position:
               
86-430
               

               
Cow position:
               
chr3:26903856-26904208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
175, 116
               

               
Conread position:
               
86-434
               

               
Cow position:
               
chr3:44101723-44102070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
162, 51
               

               
Conread position:
               
86-434
               

               
Cow position:
               
chr3:57624204-57624566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
86-435
               

               
Cow position:
               
chr3:8393087-8393450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
77, 124
               

               
Conread position:
               
86-435
               

               
Cow position:
               
chr3:36672262-36671889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 295
               

               
Conread position:
               
86-435
               

               
Cow position:
               
chr3:48252638-48252989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
166, 17
               

               
Conread position:
               
86-435
               

               
Cow position:
               
chr3:80053793-80053439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
162, 59
               

               
Conread position:
               
86-436
               

               
Cow position:
               
chr3:31225190-31225538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
61, 154
               

               
Conread position:
               
86-436
               

               
Cow position:
               
chr3:64281195-64280827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 117
               

               
Conread position:
               
86-439
               

               
Cow position:
               
chr3:65236766-65237132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
166, 51
               

               
Conread position:
               
86-439
               

               
Cow position:
               
chr3:77271526-77271169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
160, 75
               

               
Conread position:
               
86-440
               

               
Cow position:
               
chr3:45881650-45882007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
183, 116
               

               
Conread position:
               
86-440
               

               
Cow position:
               
chr3:48852225-48851861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
86-440
               

               
Cow position:
               
chr3:73467360-73467746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 48
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr3:17695264-17694895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
77, 123
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr3:31309614-31309244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 121
               

               
Conread position:
               
86-443
               

               
Cow position:
               
chr3:68303069-68303425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
86-445
               

               
Cow position:
               
chr3:53112910-53113287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
71, 118
               

               
Conread position:
               
86-446
               

               
Cow position:
               
chr3:51578580-51578208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
80, 117
               

               
Conread position:
               
86-447
               

               
Cow position:
               
chr3:2674770-2675145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
160, 103
               

               
Conread position:
               
86-448
               

               
Cow position:
               
chr3:76172921-76172576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
86-449
               

               
Cow position:
               
chr3:17222403-17222024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
115, 173
               

               
Conread position:
               
86-451
               

               
Cow position:
               
chr3:59630758-59630395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
186, 93
               

               
Conread position:
               
86-451
               

               
Cow position:
               
chr3:78946098-78945715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
86-454
               

               
Cow position:
               
chr3:63179609-63179963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
162, 73
               

               
Conread position:
               
86-459
               

               
Cow position:
               
chr3:21081644-21081260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
86-486
               

               
Cow position:
               
chr3:26920638-26921065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
108, 15
               

               
Conread position:
               
86-496
               

               
Cow position:
               
chr3:30463425-30463012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
158, 116
               

               
Conread position:
               
86-502
               

               
Cow position:
               
chr3:73443346-73442926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
175, 117
               

               
Conread position:
               
86-505
               

               
Cow position:
               
chr3:28908454-28908032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
165, 70
               

               
Conread position:
               
86-510
               

               
Cow position:
               
chr3:70899641-70900069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
179, 96
               

               
Conread position:
               
86-511
               

               
Cow position:
               
chr3:23471727-23471276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
86-512
               

               
Cow position:
               
chr3:2506740-2506296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 120
               

               
Conread position:
               
86-512
               

               
Cow position:
               
chr3:9641305-9641746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
68, 158
               

               
Conread position:
               
86-516
               

               
Cow position:
               
chr3:60597289-60597734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
163, 52
               

               
Conread position:
               
86-582
               

               
Cow position:
               
chr3:39171743-39171211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
85, 120
               

               
Conread position:
               
87-195
               

               
Cow position:
               
chr3:4461747-4461639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr3:6403039-6403156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr3:8901163-8901279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr3:19198423-19198541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
87-205
               

               
Cow position:
               
chr3:83369064-83369178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
87-234
               

               
Cow position:
               
chr3:13118087-13118233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 124
               

               
Conread position:
               
87-244
               

               
Cow position:
               
chr3:84368628-84368481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr3:41947380-41947217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
75, 124
               

               
Conread position:
               
87-250
               

               
Cow position:
               
chr3:8604272-8604117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-253
               

               
Cow position:
               
chr3:58158725-58158563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
87-253
               

               
Cow position:
               
chr3:59451336-59451495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr3:364477-364306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 124
               

               
Conread position:
               
87-259
               

               
Cow position:
               
chr3:4087424-4087258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
87-261
               

               
Cow position:
               
chr3:27289679-27289849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr3:2024926-2025095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 84
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr3:13899711-13899537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-262
               

               
Cow position:
               
chr3:27285967-27286141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
87-263
               

               
Cow position:
               
chr3:39970130-39969958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 119
               

               
Conread position:
               
87-263
               

               
Cow position:
               
chr3:41367242-41367076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr3:5899567-5899733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr3:34392355-34392181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 76
               

               
Conread position:
               
87-266
               

               
Cow position:
               
chr3:44623156-44622968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
114, 8
               

               
Conread position:
               
87-266
               

               
Cow position:
               
chr3:49731896-49731728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr3:12323807-12323992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr3:30009168-30008996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr3:61467347-61467525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
87-267
               

               
Cow position:
               
chr3:82657343-82657167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
161, 91
               

               
Conread position:
               
87-271
               

               
Cow position:
               
chr3:35283356-35283176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
87-304
               

               
Cow position:
               
chr3:70468062-70467854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
117, 73
               

               
Conread position:
               
87-326
               

               
Cow position:
               
chr3:30701064-30701298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 90
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr3:16547418-16547669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 123
               

               
Conread position:
               
87-341
               

               
Cow position:
               
chr3:68583261-68583001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
161, 119
               

               
Conread position:
               
87-342
               

               
Cow position:
               
chr3:33698463-33698735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 124
               

               
Conread position:
               
87-360
               

               
Cow position:
               
chr3:62999263-62998988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr3:54959932-54960211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
161, 89
               

               
Conread position:
               
87-373
               

               
Cow position:
               
chr3:79902245-79902538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
159, 120
               

               
Conread position:
               
87-374
               

               
Cow position:
               
chr3:19708358-19708065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
161, 13
               

               
Conread position:
               
87-380
               

               
Cow position:
               
chr3:79148534-79148236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-385
               

               
Cow position:
               
chr3:51012791-51012499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
189, 119
               

               
Conread position:
               
87-385
               

               
Cow position:
               
chr3:67929524-67929206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
87-389
               

               
Cow position:
               
chr3:31056260-31055955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:18854835-18855134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
159, 63
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:18887321-18887626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 142
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:26065743-26066059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
85, 113
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:31298418-31298104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
72, 124
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:34096212-34095902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
117, 57
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:39661706-39661398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
178, 16
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:53573008-53572693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
175, 79
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:54050277-54049972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
82, 57
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:60933157-60933476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 121
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:61539538-61539860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
87-390
               

               
Cow position:
               
chr3:74621255-74620936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-391
               

               
Cow position:
               
chr3:72776982-72777298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
87-392
               

               
Cow position:
               
chr3:20437904-20437595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
161, 69
               

               
Conread position:
               
87-393
               

               
Cow position:
               
chr3:30055704-30055396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
161, 78
               

               
Conread position:
               
87-397
               

               
Cow position:
               
chr3:6689733-6690066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
87-408
               

               
Cow position:
               
chr3:61840031-61840352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 63
               

               
Conread position:
               
87-408
               

               
Cow position:
               
chr3:79292576-79292905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
149, 86
               

               
Conread position:
               
87-413
               

               
Cow position:
               
chr3:20802888-20802549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 120
               

               
Conread position:
               
87-417
               

               
Cow position:
               
chr3:38346943-38347276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
85, 101
               

               
Conread position:
               
87-417
               

               
Cow position:
               
chr3:71231148-71231481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
162, 62
               

               
Conread position:
               
87-417
               

               
Cow position:
               
chr3:79884745-79884400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
161, 117
               

               
Conread position:
               
87-422
               

               
Cow position:
               
chr3:66292437-66292085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
98, 117
               

               
Conread position:
               
87-423
               

               
Cow position:
               
chr3:65968896-65969259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
60, 124
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr3:26682052-26681721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
185, 83
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr3:48241363-48241706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
161, 86
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr3:53270568-53270923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
71, 121
               

               
Conread position:
               
87-424
               

               
Cow position:
               
chr3:71237899-71238246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
161, 37
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr3:2393224-2392874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
70, 92
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr3:13302114-13301757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
46, 91
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr3:14601972-14601610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
54, 120
               

               
Conread position:
               
87-425
               

               
Cow position:
               
chr3:54740130-54739793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
70, 91
               

               
Conread position:
               
87-426
               

               
Cow position:
               
chr3:74533090-74533444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 174
               

               
Conread position:
               
87-427
               

               
Cow position:
               
chr3:73961937-73961601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
177, 60
               

               
Conread position:
               
87-428
               

               
Cow position:
               
chr3:6873503-6873153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
57, 122
               

               
Conread position:
               
87-428
               

               
Cow position:
               
chr3:42423589-42423231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
174, 88
               

               
Conread position:
               
87-433
               

               
Cow position:
               
chr3:55117230-55116875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 124
               

               
Conread position:
               
87-434
               

               
Cow position:
               
chr3:47284579-47284916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
218, 87
               

               
Conread position:
               
87-440
               

               
Cow position:
               
chr3:53909854-53910217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
26, 66
               

               
Conread position:
               
87-440
               

               
Cow position:
               
chr3:75570700-75570345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
170, 40
               

               
Conread position:
               
87-441
               

               
Cow position:
               
chr3:31206614-31206984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
161, 120
               

               
Conread position:
               
87-441
               

               
Cow position:
               
chr3:54434715-54435081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
80, 226
               

               
Conread position:
               
87-441
               

               
Cow position:
               
chr3:57754742-57754366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-441
               

               
Cow position:
               
chr3:65413534-65413165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
161, 47
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr3:14465962-14465597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr3:18066876-18067242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 116
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr3:25690527-25690907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr3:29596136-29596504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
102, 88
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr3:53592958-53592579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr3:72390822-72391195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 122
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr3:75046129-75045763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
87-443
               

               
Cow position:
               
chr3:75158107-75158467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
161, 62
               

               
Conread position:
               
87-444
               

               
Cow position:
               
chr3:29812985-29813341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 116
               

               
Conread position:
               
87-444
               

               
Cow position:
               
chr3:53384541-53384168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
157, 63
               

               
Conread position:
               
87-444
               

               
Cow position:
               
chr3:65058443-65058808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
79, 40
               

               
Conread position:
               
87-446
               

               
Cow position:
               
chr3:3985072-3985432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
162, 88
               

               
Conread position:
               
87-446
               

               
Cow position:
               
chr3:52863442-52863070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
87-448
               

               
Cow position:
               
chr3:38691664-38691289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
107, 95
               

               
Conread position:
               
87-449
               

               
Cow position:
               
chr3:22716538-22716176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
214, 115
               

               
Conread position:
               
87-449
               

               
Cow position:
               
chr3:51033086-51033482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
77, 249
               

               
Conread position:
               
87-449
               

               
Cow position:
               
chr3:66901000-66900617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
161, 120
               

               
Conread position:
               
87-451
               

               
Cow position:
               
chr3:70401644-70402018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 114
               

               
Conread position:
               
87-463
               

               
Cow position:
               
chr3:59208556-59208928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
161, 115
               

               
Conread position:
               
87-463
               

               
Cow position:
               
chr3:59691646-59692018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
161, 72
               

               
Conread position:
               
87-464
               

               
Cow position:
               
chr3:5101018-5100639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
87-464
               

               
Cow position:
               
chr3:6853759-6853404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
161, 69
               

               
Conread position:
               
87-472
               

               
Cow position:
               
chr3:81471359-81470952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 115
               

               
Conread position:
               
87-478
               

               
Cow position:
               
chr3:2216101-2216517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
65, 119
               

               
Conread position:
               
87-482
               

               
Cow position:
               
chr3:46900936-46901354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
87-491
               

               
Cow position:
               
chr3:35852726-35852311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
77, 112
               

               
Conread position:
               
87-491
               

               
Cow position:
               
chr3:49218566-49218167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
99, 38
               

               
Conread position:
               
87-497
               

               
Cow position:
               
chr3:1830821-1830408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
167, 33
               

               
Conread position:
               
87-498
               

               
Cow position:
               
chr3:57577436-57577862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
70, 100
               

               
Conread position:
               
87-517
               

               
Cow position:
               
chr3:66375063-66375479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
152, 47
               

               
Conread position:
               
87-530
               

               
Cow position:
               
chr3:17935181-17934751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
180, 60
               

               
Conread position:
               
87-595
               

               
Cow position:
               
chr3:14263134-14263664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
159, 120
               

               
Conread position:
               
87-598
               

               
Cow position:
               
chr3:51604865-51604361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 124
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr3:1133352-1133182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 108
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr3:42483643-42483810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
88-264
               

               
Cow position:
               
chr3:25691492-25691669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 99
               

               
Conread position:
               
88-342
               

               
Cow position:
               
chr3:5851185-5850925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 138
               

               
Conread position:
               
88-347
               

               
Cow position:
               
chr3:9843326-9843596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
88-371
               

               
Cow position:
               
chr3:61171767-61171467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
160, 80
               

               
Conread position:
               
88-380
               

               
Cow position:
               
chr3:8716989-8717282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
88-390
               

               
Cow position:
               
chr3:74088431-74088121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
76, 123
               

               
Conread position:
               
88-398
               

               
Cow position:
               
chr3:49461195-49460859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
8, 124
               

               
Conread position:
               
88-424
               

               
Cow position:
               
chr3:7331374-7331035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
88-424
               

               
Cow position:
               
chr3:56476425-56476775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
169, 73
               

               
Conread position:
               
88-440
               

               
Cow position:
               
chr3:23169327-23168957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 117
               

               
Conread position:
               
88-441
               

               
Cow position:
               
chr3:83490819-83491193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 126
               

               
Conread position:
               
88-448
               

               
Cow position:
               
chr3:53046914-53046546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 90
               

               
Conread position:
               
88-469
               

               
Cow position:
               
chr3:48296452-48296836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
177, 119
               

               
Conread position:
               
88-494
               

               
Cow position:
               
chr3:3556287-3556707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
88-514
               

               
Cow position:
               
chr3:49650122-49650569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
89-259
               

               
Cow position:
               
chr3:45524008-45524172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
89-266
               

               
Cow position:
               
chr3:45312797-45312963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
89-267
               

               
Cow position:
               
chr3:3164752-3164577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
159, 118
               

               
Conread position:
               
89-390
               

               
Cow position:
               
chr3:31419445-31419751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
157, 76
               

               
Conread position:
               
89-390
               

               
Cow position:
               
chr3:79592145-79591832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
68, 122
               

               
Conread position:
               
89-425
               

               
Cow position:
               
chr3:73708793-73709140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 35
               

               
Conread position:
               
89-430
               

               
Cow position:
               
chr3:7566675-7566318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
183, 86
               

               
Conread position:
               
89-434
               

               
Cow position:
               
chr3:82056374-82056017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 216
               

               
Conread position:
               
89-440
               

               
Cow position:
               
chr3:48566923-48566583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 105
               

               
Conread position:
               
89-442
               

               
Cow position:
               
chr3:2680255-2680624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
63, 118
               

               
Conread position:
               
90-267
               

               
Cow position:
               
chr3:15661955-15661782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
158, 92
               

               
Conread position:
               
90-423
               

               
Cow position:
               
chr3:2537996-2538332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
76, 118
               

               
Conread position:
               
90-434
               

               
Cow position:
               
chr3:26970570-26970915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
64, 119
               

               
Conread position:
               
90-447
               

               
Cow position:
               
chr3:16752508-16752145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
175, 112
               

               
Conread position:
               
90-451
               

               
Cow position:
               
chr3:48578586-48578926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
243, 41
               

               
Conread position:
               
91-259
               

               
Cow position:
               
chr3:61857242-61857409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 120
               

               
Conread position:
               
91-340
               

               
Cow position:
               
chr3:41328201-41328445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
157, 72
               

               
Conread position:
               
91-443
               

               
Cow position:
               
chr3:7678417-7678765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
165, 70
               

               
Conread position:
               
92-390
               

               
Cow position:
               
chr3:5045063-5044754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
93-258
               

               
Cow position:
               
chr3:31501095-31501256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
64, 113
               

               
Conread position:
               
93-389
               

               
Cow position:
               
chr3:34937589-34937902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
93-424
               

               
Cow position:
               
chr3:74233943-74234279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
53, 110
               

               
Conread position:
               
94-411
               

               
Cow position:
               
chr3:11711702-11712046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
94-425
               

               
Cow position:
               
chr3:52652325-52651985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 77
               

               
Conread position:
               
95-267
               

               
Cow position:
               
chr3:22900246-22900073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 119
               

               
Conread position:
               
95-440
               

               
Cow position:
               
chr3:70334952-70334584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
95-464
               

               
Cow position:
               
chr3:15752878-15752501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
157, 55
               

               
Conread position:
               
97-259
               

               
Cow position:
               
chr3:55947327-55947488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
97-270
               

               
Cow position:
               
chr3:44932260-44932433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
66, 109
               

               
Conread position:
               
97-422
               

               
Cow position:
               
chr3:43233255-43233597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 113
               

               
Conread position:
               
97-425
               

               
Cow position:
               
chr3:58767031-58767357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 61
               

               
Conread position:
               
98-424
               

               
Cow position:
               
chr3:3738237-3738574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 133
               

               
Conread position:
               
99-392
               

               
Cow position:
               
chr3:23445136-23444827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
149, 57
               

               
Conread position:
               
99-424
               

               
Cow position:
               
chr3:115961-116283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
173, 20
               

               
Conread position:
               
106-424
               

               
Cow position:
               
chr3:53221775-53222106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 117
               

               
Conread position:
               
106-443
               

               
Cow position:
               
chr3:81087848-81087529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
161, 7
               

               
Conread position:
               
107-267
               

               
Cow position:
               
chr3:4861451-4861605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
141, 91
               

               
Conread position:
               
108-422
               

               
Cow position:
               
chr3:17134102-17134425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
75, 58
               

               
Conread position:
               
110-451
               

               
Cow position:
               
chr3:17447843-17447497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
155, 82
               

               
Conread position:
               
110-469
               

               
Cow position:
               
chr3:31047184-31046811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
138, 20
               

               
Conread position:
               
110-515
               

               
Cow position:
               
chr3:27274298-27274710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
133, 54
               

               
Conread position:
               
112-342
               

               
Cow position:
               
chr3:55106676-55106435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
47, 99
               

               
Conread position:
               
112-447
               

               
Cow position:
               
chr3:67930411-67930071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
113-338
               

               
Cow position:
               
chr3:22888148-22887929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
161, 52
               

               
Conread position:
               
115-433
               

               
Cow position:
               
chr3:59333537-59333860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 49
               

               
Conread position:
               
116-373
               

               
Cow position:
               
chr3:15672373-15672112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
157, 91
               

               
Conread position:
               
117-263
               

               
Cow position:
               
chr3:23215812-23215662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
121-419
               

               
Cow position:
               
chr3:11063154-11063456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
123-408
               

               
Cow position:
               
chr3:42367721-42367437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
120, 83
               

               
Conread position:
               
123-425
               

               
Cow position:
               
chr3:60265458-60265160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
190, 41
               

               
Conread position:
               
129-440
               

               
Cow position:
               
chr3:20842078-20841768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
130-401
               

               
Cow position:
               
chr3:78896433-78896718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 65
               

               
Conread position:
               
130-475
               

               
Cow position:
               
chr3:76713537-76713184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
119, 44
               

               
Conread position:
               
133-390
               

               
Cow position:
               
chr3:74878802-74878530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
116, 47
               

               
Conread position:
               
133-441
               

               
Cow position:
               
chr3:4319498-4319822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
146-436
               

               
Cow position:
               
chr3:59884272-59883962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
147-438
               

               
Cow position:
               
chr3:6182398-6182120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
166, 60
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr3:3637992-3638262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
151-417
               

               
Cow position:
               
chr3:38828572-38828843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
151-422
               

               
Cow position:
               
chr3:53875953-53875674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
97, 45
               

               
Conread position:
               
151-425
               

               
Cow position:
               
chr3:14598756-14599030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
151-576
               

               
Cow position:
               
chr3:66884135-66883685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
97, 50
               

               
Conread position:
               
155-417
               

               
Cow position:
               
chr3:34669918-34669647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
96, 51
               

               
Conread position:
               
160-414
               

               
Cow position:
               
chr3:74502507-74502242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 47
               

               
Conread position:
               
160-430
               

               
Cow position:
               
chr3:20678020-20677742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 77
               

               
Conread position:
               
160-449
               

               
Cow position:
               
chr3:53318218-53318519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 47
               

               
Conread position:
               
164-400
               

               
Cow position:
               
chr3:26981883-26982127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 43
               

               
Conread position:
               
166-424
               

               
Cow position:
               
chr3:75107615-75107867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 41
               

               
Conread position:
               
166-580
               

               
Cow position:
               
chr3:81359292-81358879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
82, 245
               

               
Conread position:
               
209-435
               

               
Cow position:
               
chr3:3889711-3889467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 210
               

               
Conread position:
               
212-449
               

               
Cow position:
               
chr3:48810778-48810524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 98
               

               
Conread position:
               
212-459
               

               
Cow position:
               
chr3:54100862-54100596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
212-459
               

               
Cow position:
               
chr3:73820511-73820245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 105
               

               
Conread position:
               
224-414
               

               
Cow position:
               
chr3:16254953-16254758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
241-463
               

               
Cow position:
               
chr3:56704420-56704187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
266-425
               

               
Cow position:
               
chr3:53704036-53703870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
272-477
               

               
Cow position:
               
chr3:11292313-11292102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
276-585
               

               
Cow position:
               
chr3:64373217-64372912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
291-444
               

               
Cow position:
               
chr3:74787385-74787541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
298-501
               

               
Cow position:
               
chr3:11705210-11705424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 208
               

               
Conread position:
               
317-584
               

               
Cow position:
               
chr3:15683169-15682913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
349-584
               

               
Cow position:
               
chr3:35285061-35285277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
351-571
               

               
Cow position:
               
chr3:15173101-15173312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
197, 72
               

               
Conread position:
               
351-574
               

               
Cow position:
               
chr3:27670433-27670647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
435-594
               

               
Cow position:
               
chr3:23444106-23443939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
444-600
               

               
Cow position:
               
chr3:53508690-53508843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
129, 21
               

               
Conread position:
               
457-575
               

               
Cow position:
               
chr3:75151333-75151211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
8, 88
               

               
Conread position:
               
461-576
               

               
Cow position:
               
chr3:44839196-44839079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
463-579
               

               
Cow position:
               
chr3:50012766-50012880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
464-600
               

               
Cow position:
               
chr3:81471002-81470865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 78
               
Show alignments to all cow chromosomes.