Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 20-289
Cow position: chr1:22906227-22906503 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 191
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 13, 138

Conread position: 20-293
Cow position: chr1:89769060-89768784 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 24-263
Cow position: chr1:77105536-77105297 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 54, 101

Conread position: 24-291
Cow position: chr1:57569319-57569585 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 32, 56

Conread position: 24-298
Cow position: chr1:81777929-81778208 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 56, 11

Conread position: 25-291
Cow position: chr1:89494727-89494475 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 67

Conread position: 25-298
Cow position: chr1:99914924-99915197 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 55, 202

Conread position: 27-292
Cow position: chr1:34694173-34694442 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 134

Conread position: 29-290
Cow position: chr1:29607575-29607310 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 51, 23

Conread position: 30-262
Cow position: chr1:56165026-56165262 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 46, 21

Conread position: 31-231
Cow position: chr1:53365037-53365231 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 158
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 90, 66

Conread position: 31-231
Cow position: chr1:76095575-76095370 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 0

Conread position: 31-293
Cow position: chr1:86508418-86508138 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 210
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 45, 14

Conread position: 31-298
Cow position: chr1:73069569-73069298 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 49, 173

Conread position: 32-201
Cow position: chr1:80445641-80445815 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 139
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 48, 0

Conread position: 32-203
Cow position: chr1:5319872-5320039 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 139
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 89, 13

Conread position: 32-232
Cow position: chr1:86595003-86594798 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 30

Conread position: 32-236
Cow position: chr1:77115181-77114963 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 50, 0

Conread position: 32-274
Cow position: chr1:33552419-33552667 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-274
Cow position: chr1:40575690-40575938 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-274
Cow position: chr1:50248208-50247972 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 187
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 160, 47

Conread position: 32-274
Cow position: chr1:57364854-57364610 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 48, 16

Conread position: 32-274
Cow position: chr1:63503283-63503519 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 12

Conread position: 32-274
Cow position: chr1:102433550-102433302 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 19

Conread position: 32-278
Cow position: chr1:82654147-82654399 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 32-280
Cow position: chr1:25053784-25054037 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 32-281
Cow position: chr1:4209698-4209953 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-281
Cow position: chr1:76741741-76741491 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 168

Conread position: 32-285
Cow position: chr1:72185390-72185132 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 48, 232

Conread position: 32-289
Cow position: chr1:79455463-79455200 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position: chr1:5503454-5503718 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 192
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position: chr1:33897750-33898014 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position: chr1:55778078-55778340 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position: chr1:56724634-56724898 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position: chr1:74285187-74284925 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-291
Cow position: chr1:12060716-12060452 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position: chr1:18964879-18964614 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr1:24442871-24442605 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr1:31812510-31812773 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 48, 139

Conread position: 32-291
Cow position: chr1:50210352-50210087 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr1:55275540-55275276 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr1:55320582-55320329 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 91, 22

Conread position: 32-291
Cow position: chr1:57658386-57658649 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 49, 78

Conread position: 32-291
Cow position: chr1:62804685-62804421 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 224

Conread position: 32-291
Cow position: chr1:71561255-71560990 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-293
Cow position: chr1:13581496-13581240 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 177
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 47, 12

Conread position: 32-293
Cow position: chr1:21116351-21116080 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 45, 93

Conread position: 32-293
Cow position: chr1:22619176-22618916 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 32-293
Cow position: chr1:67910038-67910304 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 48, 6

Conread position: 32-293
Cow position: chr1:69416791-69416538 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 48

Conread position: 32-295
Cow position: chr1:17940280-17940012 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 242

Conread position: 32-296
Cow position: chr1:56192673-56192404 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 13

Conread position: 32-298
Cow position: chr1:1828818-1828548 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 47, 12

Conread position: 32-298
Cow position: chr1:8826544-8826816 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 44, 0

Conread position: 32-298
Cow position: chr1:10724071-10724341 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 87

Conread position: 32-298
Cow position: chr1:17011245-17010976 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 87

Conread position: 32-298
Cow position: chr1:17035104-17034833 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 240

Conread position: 32-298
Cow position: chr1:18240735-18240471 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 206
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 48, 83

Conread position: 32-298
Cow position: chr1:20830385-20830657 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 32-298
Cow position: chr1:21088922-21089193 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 30

Conread position: 32-298
Cow position: chr1:21592080-21592350 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 106

Conread position: 32-298
Cow position: chr1:24652756-24653026 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 32-298
Cow position: chr1:25551454-25551732 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:26517399-26517127 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:26584590-26584861 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:28874557-28874830 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:29363785-29364057 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 32-298
Cow position: chr1:30074361-30074632 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:32566434-32566169 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-298
Cow position: chr1:33713561-33713843 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 252

Conread position: 32-298
Cow position: chr1:33852759-33853031 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:39107075-39107340 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 69

Conread position: 32-298
Cow position: chr1:39545277-39545546 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 240

Conread position: 32-298
Cow position: chr1:40056594-40056866 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:40683252-40682980 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:42737923-42738191 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 13

Conread position: 32-298
Cow position: chr1:48248402-48248665 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 48

Conread position: 32-298
Cow position: chr1:51965763-51966039 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 47, 262

Conread position: 32-298
Cow position: chr1:52357769-52357497 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:53200035-53200306 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 161

Conread position: 32-298
Cow position: chr1:56142854-56142581 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:57423342-57423070 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:59207589-59207317 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:62243163-62242891 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:63604281-63604009 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:69768070-69768341 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 240

Conread position: 32-298
Cow position: chr1:72984964-72985212 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 174, 6

Conread position: 32-298
Cow position: chr1:76750483-76750210 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 32-298
Cow position: chr1:77923198-77923470 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:79635502-79635237 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 102

Conread position: 32-298
Cow position: chr1:81288625-81288897 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:82565603-82565875 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:85778960-85778693 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 43

Conread position: 32-298
Cow position: chr1:85793171-85793443 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr1:88268601-88268336 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 183
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 22, 43

Conread position: 32-298
Cow position: chr1:91891629-91891359 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-298
Cow position: chr1:93856004-93856274 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-298
Cow position: chr1:94661162-94661431 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-314
Cow position: chr1:82477466-82477755 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 33-290
Cow position: chr1:31417017-31416762 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 19, 205

Conread position: 33-297
Cow position: chr1:38417625-38417881 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 89

Conread position: 34-201
Cow position: chr1:20525971-20526143 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 46, 0

Conread position: 34-251
Cow position: chr1:27187789-27188000 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 87, 164

Conread position: 34-267
Cow position: chr1:90607386-90607148 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 46, 228

Conread position: 34-273
Cow position: chr1:61590704-61590466 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 45, 17

Conread position: 34-274
Cow position: chr1:68606055-68605809 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 180
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 43, 0

Conread position: 34-298
Cow position: chr1:3933765-3933498 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 118

Conread position: 34-298
Cow position: chr1:9259977-9260247 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 34-298
Cow position: chr1:9379025-9378756 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 24

Conread position: 34-298
Cow position: chr1:27112935-27112674 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 187
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 90, 45

Conread position: 34-298
Cow position: chr1:86546645-86546375 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 35-264
Cow position: chr1:11859272-11859035 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 35-278
Cow position: chr1:72945235-72945474 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 170, 10

Conread position: 35-280
Cow position: chr1:31193062-31192814 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 44, 10

Conread position: 35-280
Cow position: chr1:40511528-40511279 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 214

Conread position: 35-290
Cow position: chr1:67833640-67833383 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 44, 189

Conread position: 35-290
Cow position: chr1:76619985-76619725 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-290
Cow position: chr1:80357678-80357416 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 35-294
Cow position: chr1:46837121-46837383 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 44, 13

Conread position: 35-298
Cow position: chr1:30533530-30533260 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-298
Cow position: chr1:67077376-67077122 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 175
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 86, 31

Conread position: 35-298
Cow position: chr1:69404494-69404762 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-298
Cow position: chr1:77463147-77463403 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 179
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 44, 78

Conread position: 35-298
Cow position: chr1:88132270-88132538 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 35-298
Cow position: chr1:88387719-88387986 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 161

Conread position: 35-298
Cow position: chr1:91900515-91900784 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 38-264
Cow position: chr1:29039530-29039760 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 22, 37

Conread position: 38-290
Cow position: chr1:22345494-22345751 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 38, 245

Conread position: 38-290
Cow position: chr1:29035796-29036050 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 137

Conread position: 38-292
Cow position: chr1:102780837-102780586 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 99

Conread position: 38-295
Cow position: chr1:98786435-98786695 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 44, 62

Conread position: 39-272
Cow position: chr1:73197535-73197302 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 40, 85

Conread position: 45-291
Cow position: chr1:50941785-50941541 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 9, 25

Conread position: 47-285
Cow position: chr1:33351077-33351318 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 0

Conread position: 47-298
Cow position: chr1:98658413-98658160 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 30, 239

Conread position: 51-291
Cow position: chr1:72112518-72112761 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 14

Conread position: 53-274
Cow position: chr1:23092149-23092365 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 68

Conread position: 53-280
Cow position: chr1:64481115-64480906 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 53-290
Cow position: chr1:81862470-81862233 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 213

Conread position: 53-298
Cow position: chr1:49972662-49972411 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 53-298
Cow position: chr1:57745890-57745634 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 53-298
Cow position: chr1:67002666-67002915 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 98

Conread position: 53-298
Cow position: chr1:72082268-72082518 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 206

Conread position: 53-299
Cow position: chr1:18026249-18025982 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 235

Conread position: 54-274
Cow position: chr1:101794787-101794999 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 26, 44

Conread position: 54-291
Cow position: chr1:3384424-3384185 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 16, 26

Conread position: 54-291
Cow position: chr1:31364591-31364348 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 55-298
Cow position: chr1:65387825-65388074 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 55-308
Cow position: chr1:91597198-91596943 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 66

Conread position: 56-288
Cow position: chr1:82922649-82922411 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 24, 0

Conread position: 59-235
Cow position: chr1:79111987-79112160 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 18, 51

Conread position: 59-298
Cow position: chr1:73020407-73020173 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 85, 15

Conread position: 61-290
Cow position: chr1:71740625-71740389 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 67-285
Cow position: chr1:38386906-38386686 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 26

Conread position: 68-295
Cow position: chr1:85824013-85824247 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 11, 207

Conread position: 70-246
Cow position: chr1:65021270-65021094 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 141
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 12

Conread position: 82-291
Cow position: chr1:40966873-40966662 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 39, 0

Conread position: 91-285
Cow position: chr1:29412646-29412450 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 31, 0

Conread position: 97-299
Cow position: chr1:40436261-40436059 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 109, 24

Conread position: 98-298
Cow position: chr1:26813512-26813311 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 23, 0

Conread position: 98-298
Cow position: chr1:30520349-30520551 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 19, 58

Conread position: 107-289
Cow position: chr1:102550073-102550249 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 14, 137

Conread position: 109-291
Cow position: chr1:62921130-62921314 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 150
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 12, 0

Conread position: 109-293
Cow position: chr1:45003771-45003951 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 13, 147

Conread position: 111-298
Cow position: chr1:22844055-22844238 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 8, 56

Conread position: 119-298
Cow position: chr1:82911247-82911067 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 143
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 86, 0

Conread position: 120-291
Cow position: chr1:58338423-58338595 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 86, 0

Conread position: 123-292
Cow position: chr1:57972013-57971838 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 82, 0

Conread position: 124-298
Cow position: chr1:89482537-89482710 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 85, 156

Conread position: 127-291
Cow position: chr1:30282262-30282086 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 95

Conread position: 128-292
Cow position: chr1:72037959-72037798 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 137
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 69, 103

Conread position: 132-298
Cow position: chr1:18194105-18194272 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 74, 0

Conread position: 136-273
Cow position: chr1:86611703-86611838 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 69, 14

Conread position: 136-298
Cow position: chr1:27542731-27542898 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 123, 60

Conread position: 137-298
Cow position: chr1:6198698-6198531 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 68, 0

Conread position: 138-292
Cow position: chr1:98617189-98617033 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 7, 0

Conread position: 139-293
Cow position: chr1:101012582-101012427 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 131
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 67, 0

Conread position: 143-298
Cow position: chr1:44972937-44973092 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 20

Conread position: 148-298
Cow position: chr1:19184710-19184553 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 151-298
Cow position: chr1:87435860-87436008 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 123
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 55, 0

Conread position: 162-298
Cow position: chr1:5355311-5355174 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 166-298
Cow position: chr1:38476937-38477070 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 40, 0

Show alignments to all cow chromosomes.