Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 13-294
Cow position:
Alignm length: 288
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 14-225
Cow position:
Alignm length: 218
Alignm identity: 132
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 19-293
Cow position:
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 61

Conread position: 19-298
Cow position:
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 19-298
Cow position:
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 19-298
Cow position:
Alignm length: 289
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 59

Conread position: 20-221
Cow position:
Alignm length: 205
Alignm identity: 144
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 13, 25

Conread position: 25-285
Cow position:
Alignm length: 264
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 25-298
Cow position:
Alignm length: 284
Alignm identity: 208
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 55, 26

Conread position: 29-280
Cow position:
Alignm length: 254
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 162

Conread position: 31-290
Cow position:
Alignm length: 265
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 31-298
Cow position:
Alignm length: 274
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 148

Conread position: 31-298
Cow position:
Alignm length: 276
Alignm identity: 196
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 51, 242

Conread position: 32-172
Cow position:
Alignm length: 146
Alignm identity: 117
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 32-204
Cow position:
Alignm length: 173
Alignm identity: 127
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 32-256
Cow position:
Alignm length: 227
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 32-275
Cow position:
Alignm length: 250
Alignm identity: 186
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 48, 120

Conread position: 32-275
Cow position:
Alignm length: 256
Alignm identity: 188
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 48, 160

Conread position: 32-279
Cow position:
Alignm length: 254
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-280
Cow position:
Alignm length: 254
Alignm identity: 187
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 48, 6

Conread position: 32-289
Cow position:
Alignm length: 261
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 13

Conread position: 32-289
Cow position:
Alignm length: 264
Alignm identity: 197
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 48, 144

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 196
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 48, 30

Conread position: 32-290
Cow position:
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 147

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position:
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 93

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 111

Conread position: 32-291
Cow position:
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 188
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 44, 53

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 206

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 263
Alignm identity: 194
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 89, 50

Conread position: 32-291
Cow position:
Alignm length: 263
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 62

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 114

Conread position: 32-292
Cow position:
Alignm length: 267
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 32-293
Cow position:
Alignm length: 267
Alignm identity: 184
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 48, 27

Conread position: 32-293
Cow position:
Alignm length: 266
Alignm identity: 190
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 47, 16

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 159

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 275
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 13

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 192
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 47, 6

Conread position: 32-298
Cow position:
Alignm length: 284
Alignm identity: 201
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 48, 233

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 276
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 200
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 47, 20

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 195
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 90, 34

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 43

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 262

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 186
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 47, 6

Conread position: 32-298
Cow position:
Alignm length: 269
Alignm identity: 200
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 48, 63

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 168

Conread position: 32-301
Cow position:
Alignm length: 279
Alignm identity: 194
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 47, 13

Conread position: 32-304
Cow position:
Alignm length: 281
Alignm identity: 199
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 26

Conread position: 33-154
Cow position:
Alignm length: 127
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 33-224
Cow position:
Alignm length: 197
Alignm identity: 141
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 91

Conread position: 33-264
Cow position:
Alignm length: 239
Alignm identity: 169
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 47, 190

Conread position: 33-291
Cow position:
Alignm length: 262
Alignm identity: 189
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 7, 78

Conread position: 33-298
Cow position:
Alignm length: 272
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 18

Conread position: 34-298
Cow position:
Alignm length: 272
Alignm identity: 198
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 46, 32

Conread position: 35-291
Cow position:
Alignm length: 260
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 155

Conread position: 35-291
Cow position:
Alignm length: 263
Alignm identity: 195
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 45, 16

Conread position: 35-292
Cow position:
Alignm length: 262
Alignm identity: 191
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 28, 48

Conread position: 35-298
Cow position:
Alignm length: 272
Alignm identity: 190
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 19, 26

Conread position: 35-298
Cow position:
Alignm length: 271
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 37-292
Cow position:
Alignm length: 262
Alignm identity: 172
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 91

Conread position: 38-178
Cow position:
Alignm length: 143
Alignm identity: 121
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 38-195
Cow position:
Alignm length: 163
Alignm identity: 127
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 38-224
Cow position:
Alignm length: 192
Alignm identity: 152
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 42, 86

Conread position: 38-292
Cow position:
Alignm length: 261
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 7

Conread position: 38-298
Cow position:
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 14

Conread position: 45-298
Cow position:
Alignm length: 268
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 9

Conread position: 47-272
Cow position:
Alignm length: 230
Alignm identity: 160
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 32, 77

Conread position: 47-296
Cow position:
Alignm length: 256
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 49-291
Cow position:
Alignm length: 247
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 35

Conread position: 51-298
Cow position:
Alignm length: 255
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 149

Conread position: 52-292
Cow position:
Alignm length: 244
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 45

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 136

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 54-237
Cow position:
Alignm length: 190
Alignm identity: 151
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 26, 0

Conread position: 54-292
Cow position:
Alignm length: 246
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 54-294
Cow position:
Alignm length: 249
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 54-298
Cow position:
Alignm length: 250
Alignm identity: 182
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 25, 83

Conread position: 55-279
Cow position:
Alignm length: 231
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 55-292
Cow position:
Alignm length: 258
Alignm identity: 185
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 22, 7

Conread position: 59-235
Cow position:
Alignm length: 184
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 59-236
Cow position:
Alignm length: 180
Alignm identity: 135
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 12, 63

Conread position: 59-274
Cow position:
Alignm length: 219
Alignm identity: 158
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 20, 51

Conread position: 59-289
Cow position:
Alignm length: 236
Alignm identity: 168
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 20, 147

Conread position: 59-291
Cow position:
Alignm length: 239
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 0

Conread position: 59-293
Cow position:
Alignm length: 241
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 59-298
Cow position:
Alignm length: 245
Alignm identity: 186
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 20, 79

Conread position: 70-292
Cow position:
Alignm length: 224
Alignm identity: 151
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 51, 5

Conread position: 70-293
Cow position:
Alignm length: 229
Alignm identity: 158
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 121, 51

Conread position: 70-298
Cow position:
Alignm length: 232
Alignm identity: 171
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 7, 22

Conread position: 74-298
Cow position:
Alignm length: 226
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 132, 27

Conread position: 94-290
Cow position:
Alignm length: 200
Alignm identity: 149
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 109-298
Cow position:
Alignm length: 198
Alignm identity: 151
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 12, 122

Conread position: 115-291
Cow position:
Alignm length: 179
Alignm identity: 135
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 6, 84

Conread position: 126-292
Cow position:
Alignm length: 171
Alignm identity: 126
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 65

Conread position: 133-293
Cow position:
Alignm length: 162
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 72, 91

Conread position: 134-298
Cow position:
Alignm length: 166
Alignm identity: 135
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 72, 0

Conread position: 144-298
Cow position:
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 62, 0

Conread position: 155-298
Cow position:
Alignm length: 145
Alignm identity: 117
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 157-298
Cow position:
Alignm length: 143
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 163-291
Cow position:
Alignm length: 130
Alignm identity: 103
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 43, 0

Show alignments to all cow chromosomes.