Cow genome map
| Conread name: | Ss1.1-rsag040_h9.5 |
| Conread position: | 24-256 |
| Cow position: | chr12:21943173-21943411 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 228 |
| Conread position: | 25-298 |
| Cow position: | chr12:30685178-30685444 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 96, 9 |
| Conread position: | 30-290 |
| Cow position: | chr12:8676653-8676387 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 30-291 |
| Cow position: | chr12:25262072-25261816 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 174, 94 |
| Conread position: | 30-298 |
| Cow position: | chr12:3209415-3209680 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 31-290 |
| Cow position: | chr12:21253146-21252883 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 31-291 |
| Cow position: | chr12:37560451-37560717 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 32-198 |
| Cow position: | chr12:31813083-31812903 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 32-289 |
| Cow position: | chr12:22568314-22568054 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 32-291 |
| Cow position: | chr12:1403941-1404201 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 32-291 |
| Cow position: | chr12:14660911-14660646 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 32-291 |
| Cow position: | chr12:24994524-24994259 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-292 |
| Cow position: | chr12:1776520-1776260 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 6 |
| Conread position: | 32-292 |
| Cow position: | chr12:1888120-1887854 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-293 |
| Cow position: | chr12:48471445-48471181 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 32-297 |
| Cow position: | chr12:20996647-20996377 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 97 |
| Conread position: | 32-298 |
| Cow position: | chr12:3362380-3362645 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 32-298 |
| Cow position: | chr12:6405197-6404928 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 32-298 |
| Cow position: | chr12:11099665-11099945 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr12:21210103-21210374 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 240 |
| Conread position: | 32-298 |
| Cow position: | chr12:21429447-21429719 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr12:27854524-27854254 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 32-298 |
| Cow position: | chr12:27931470-27931197 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 32-298 |
| Cow position: | chr12:42606809-42606540 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 32-298 |
| Cow position: | chr12:42858097-42857824 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 45, 258 |
| Conread position: | 33-288 |
| Cow position: | chr12:17967251-17967512 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 34-214 |
| Cow position: | chr12:34174558-34174743 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 34-298 |
| Cow position: | chr12:22204271-22204002 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 254 |
| Conread position: | 35-293 |
| Cow position: | chr12:28005324-28005577 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 38-280 |
| Cow position: | chr12:5145121-5145354 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 38-285 |
| Cow position: | chr12:35345978-35346228 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 39-187 |
| Cow position: | chr12:20844041-20844190 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 41-298 |
| Cow position: | chr12:43913286-43913549 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 42-290 |
| Cow position: | chr12:23140726-23140471 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 44-274 |
| Cow position: | chr12:24433634-24433398 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 45-248 |
| Cow position: | chr12:3971089-3970879 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 45-298 |
| Cow position: | chr12:32655002-32655261 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 52-272 |
| Cow position: | chr12:32677532-32677312 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 70, 145 |
| Conread position: | 53-292 |
| Cow position: | chr12:23161447-23161205 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 53-298 |
| Cow position: | chr12:21092259-21092016 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 53-298 |
| Cow position: | chr12:34174802-34175054 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 220 |
| Conread position: | 55-298 |
| Cow position: | chr12:20461768-20461519 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 57-277 |
| Cow position: | chr12:21482574-21482791 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 149, 23 |
| Conread position: | 59-298 |
| Cow position: | chr12:29445203-29445440 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 61-292 |
| Cow position: | chr12:19870356-19870588 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 19, 192 |
| Conread position: | 62-298 |
| Cow position: | chr12:25099000-25098765 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 82-280 |
| Cow position: | chr12:33042853-33043054 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 87-274 |
| Cow position: | chr12:466777-466591 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 118, 39 |
| Conread position: | 94-298 |
| Cow position: | chr12:15950302-15950097 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 190 |
| Conread position: | 107-277 |
| Cow position: | chr12:11581520-11581689 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 98, 156 |
| Conread position: | 114-298 |
| Cow position: | chr12:21310714-21310529 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 7, 146 |
| Conread position: | 119-291 |
| Cow position: | chr12:22519449-22519276 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 120-299 |
| Cow position: | chr12:756716-756884 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 123-293 |
| Cow position: | chr12:21897358-21897528 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 83, 24 |
| Conread position: | 128-278 |
| Cow position: | chr12:12294102-12294248 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 141-291 |
| Cow position: | chr12:21428040-21427889 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.