Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 25-293
Cow position:
Alignm length: 296
Alignm identity: 216
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 29, 23

Conread position: 25-298
Cow position:
Alignm length: 280
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 20

Conread position: 26-298
Cow position:
Alignm length: 281
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 30-240
Cow position:
Alignm length: 217
Alignm identity: 166
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 49, 17

Conread position: 31-280
Cow position:
Alignm length: 254
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 7

Conread position: 31-291
Cow position:
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 31-298
Cow position:
Alignm length: 276
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 23

Conread position: 32-203
Cow position:
Alignm length: 174
Alignm identity: 138
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 48, 6

Conread position: 32-209
Cow position:
Alignm length: 183
Alignm identity: 139
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 48, 6

Conread position: 32-225
Cow position:
Alignm length: 201
Alignm identity: 153
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 48, 0

Conread position: 32-236
Cow position:
Alignm length: 210
Alignm identity: 166
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 0

Conread position: 32-240
Cow position:
Alignm length: 215
Alignm identity: 162
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 48, 120

Conread position: 32-256
Cow position:
Alignm length: 231
Alignm identity: 170
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 44, 221

Conread position: 32-260
Cow position:
Alignm length: 237
Alignm identity: 170
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 47, 83

Conread position: 32-264
Cow position:
Alignm length: 239
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-276
Cow position:
Alignm length: 248
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-279
Cow position:
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 242

Conread position: 32-280
Cow position:
Alignm length: 257
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-289
Cow position:
Alignm length: 265
Alignm identity: 197
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 51, 19

Conread position: 32-290
Cow position:
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 197

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 271
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-292
Cow position:
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-293
Cow position:
Alignm length: 276
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 176

Conread position: 32-295
Cow position:
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 218

Conread position: 32-297
Cow position:
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 170

Conread position: 32-298
Cow position:
Alignm length: 279
Alignm identity: 201
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 249

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 75

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 10

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 32-298
Cow position:
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 30

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 204

Conread position: 32-298
Cow position:
Alignm length: 268
Alignm identity: 194
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 174, 48

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 161

Conread position: 32-298
Cow position:
Alignm length: 269
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 238

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 240

Conread position: 35-274
Cow position:
Alignm length: 244
Alignm identity: 170
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 88, 39

Conread position: 35-288
Cow position:
Alignm length: 260
Alignm identity: 182
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 44, 78

Conread position: 35-292
Cow position:
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 175

Conread position: 35-293
Cow position:
Alignm length: 264
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 77

Conread position: 35-293
Cow position:
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-298
Cow position:
Alignm length: 270
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 35-298
Cow position:
Alignm length: 271
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 61

Conread position: 35-298
Cow position:
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-298
Cow position:
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 45

Conread position: 37-291
Cow position:
Alignm length: 264
Alignm identity: 176
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 38-288
Cow position:
Alignm length: 257
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 108

Conread position: 40-290
Cow position:
Alignm length: 257
Alignm identity: 173
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 20

Conread position: 45-290
Cow position:
Alignm length: 252
Alignm identity: 173
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 47-293
Cow position:
Alignm length: 252
Alignm identity: 164
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 52-274
Cow position:
Alignm length: 240
Alignm identity: 165
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 53-298
Cow position:
Alignm length: 254
Alignm identity: 184
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 154

Conread position: 53-298
Cow position:
Alignm length: 251
Alignm identity: 191
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 72

Conread position: 54-198
Cow position:
Alignm length: 153
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 57-298
Cow position:
Alignm length: 243
Alignm identity: 179
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 53

Conread position: 57-298
Cow position:
Alignm length: 248
Alignm identity: 175
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 64, 50

Conread position: 59-274
Cow position:
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 45

Conread position: 59-287
Cow position:
Alignm length: 236
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 62-298
Cow position:
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 133

Conread position: 64-290
Cow position:
Alignm length: 233
Alignm identity: 173
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 14, 0

Conread position: 70-291
Cow position:
Alignm length: 224
Alignm identity: 162
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 83-292
Cow position:
Alignm length: 211
Alignm identity: 142
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 122, 41

Conread position: 83-293
Cow position:
Alignm length: 213
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 28

Conread position: 85-291
Cow position:
Alignm length: 209
Alignm identity: 161
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 36, 0

Conread position: 120-285
Cow position:
Alignm length: 167
Alignm identity: 135
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 85, 0

Conread position: 132-289
Cow position:
Alignm length: 159
Alignm identity: 131
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 73, 0

Conread position: 134-248
Cow position:
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 137-272
Cow position:
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 156-291
Cow position:
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 166-298
Cow position:
Alignm length: 134
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 57

Show alignments to all cow chromosomes.