Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 8-298
Cow position: chr14:5075022-5075308 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 25, 93

Conread position: 16-293
Cow position: chr14:30660992-30660709 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 188
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 30, 18

Conread position: 19-292
Cow position: chr14:24523021-24523297 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 182
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 72, 33

Conread position: 20-298
Cow position: chr14:45027920-45027636 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 181

Conread position: 29-186
Cow position: chr14:13274698-13274859 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 51, 13

Conread position: 30-231
Cow position: chr14:23932685-23932889 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 159
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 50, 8

Conread position: 30-263
Cow position: chr14:9521618-9521389 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 49, 15

Conread position: 30-298
Cow position: chr14:16918623-16918355 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 50, 190

Conread position: 31-290
Cow position: chr14:13834237-13834498 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 174
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 62, 109

Conread position: 32-138
Cow position: chr14:40342155-40342262 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 32-203
Cow position: chr14:44227471-44227647 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 48, 0

Conread position: 32-226
Cow position: chr14:10147969-10148169 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 159
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 0

Conread position: 32-240
Cow position: chr14:33402777-33402988 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 48, 78

Conread position: 32-257
Cow position: chr14:45188714-45188480 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 48, 145

Conread position: 32-257
Cow position: chr14:47939878-47939656 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 173, 47

Conread position: 32-274
Cow position: chr14:191139-191387 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-274
Cow position: chr14:16999962-16999715 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 6

Conread position: 32-280
Cow position: chr14:45207379-45207628 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 46, 190

Conread position: 32-285
Cow position: chr14:13863002-13862745 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 100

Conread position: 32-285
Cow position: chr14:44552933-44553188 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 48, 188

Conread position: 32-289
Cow position: chr14:45670941-45670678 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position: chr14:12124088-12123824 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position: chr14:13780046-13780310 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position: chr14:15274744-15274482 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 75

Conread position: 32-291
Cow position: chr14:1659550-1659814 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 37

Conread position: 32-291
Cow position: chr14:17490244-17489981 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 166

Conread position: 32-291
Cow position: chr14:17687591-17687855 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 193

Conread position: 32-291
Cow position: chr14:18105522-18105781 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 181
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 48, 12

Conread position: 32-291
Cow position: chr14:44290160-44290423 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 18

Conread position: 32-292
Cow position: chr14:35425216-35425477 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 59, 13

Conread position: 32-293
Cow position: chr14:30595259-30594993 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 169

Conread position: 32-293
Cow position: chr14:44380445-44380707 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 104

Conread position: 32-293
Cow position: chr14:49217206-49217474 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 38

Conread position: 32-294
Cow position: chr14:13304047-13304317 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 32-298
Cow position: chr14:751661-751931 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-298
Cow position: chr14:2287361-2287631 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 104

Conread position: 32-298
Cow position: chr14:5514025-5514294 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 37

Conread position: 32-298
Cow position: chr14:5530152-5530424 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr14:7473446-7473718 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 168

Conread position: 32-298
Cow position: chr14:12611506-12611776 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr14:12741942-12741680 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 187

Conread position: 32-298
Cow position: chr14:16808228-16807956 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr14:17759796-17759532 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 6

Conread position: 32-298
Cow position: chr14:18417601-18417870 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 12

Conread position: 32-298
Cow position: chr14:19327168-19326896 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr14:33678158-33678428 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 13

Conread position: 32-298
Cow position: chr14:43559330-43559604 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 107

Conread position: 32-298
Cow position: chr14:45710634-45710372 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 174, 48

Conread position: 32-298
Cow position: chr14:48253220-48252961 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 48, 17

Conread position: 32-298
Cow position: chr14:48826372-48826641 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 33-185
Cow position: chr14:16272200-16272043 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 34-298
Cow position: chr14:11153056-11152786 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 163

Conread position: 34-298
Cow position: chr14:27978452-27978722 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 35-288
Cow position: chr14:2295370-2295625 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 156

Conread position: 35-291
Cow position: chr14:23256264-23256002 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 35-291
Cow position: chr14:29046575-29046312 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 35-296
Cow position: chr14:9046677-9046944 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 38-148
Cow position: chr14:44690171-44690280 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 41

Conread position: 38-242
Cow position: chr14:17610166-17610374 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 41, 160

Conread position: 38-298
Cow position: chr14:20783568-20783834 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 39-298
Cow position: chr14:22030348-22030083 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 40-257
Cow position: chr14:14032130-14031918 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 14

Conread position: 45-236
Cow position: chr14:27990509-27990324 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 34, 77

Conread position: 45-276
Cow position: chr14:44255661-44255439 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 5, 90

Conread position: 45-290
Cow position: chr14:37225261-37225514 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 45-292
Cow position: chr14:41410865-41411108 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 23

Conread position: 45-298
Cow position: chr14:11476186-11475924 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 94

Conread position: 45-298
Cow position: chr14:16342795-16342535 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 45-298
Cow position: chr14:46466770-46467023 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 9, 167

Conread position: 45-298
Cow position: chr14:48601243-48600986 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 94

Conread position: 46-298
Cow position: chr14:43556085-43556347 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 34, 52

Conread position: 52-193
Cow position: chr14:45677969-45677827 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 24

Conread position: 52-298
Cow position: chr14:30583280-30583034 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 28, 38

Conread position: 53-298
Cow position: chr14:32448071-32448323 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 189
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 27, 41

Conread position: 54-274
Cow position: chr14:33402960-33403179 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 10, 80

Conread position: 56-295
Cow position: chr14:10520400-10520163 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 65, 13

Conread position: 57-291
Cow position: chr14:45086343-45086579 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 19, 68

Conread position: 59-255
Cow position: chr14:37454823-37454624 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 162
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 21, 55

Conread position: 59-274
Cow position: chr14:40167552-40167335 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 62, 21

Conread position: 59-293
Cow position: chr14:35930714-35930947 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 20, 63

Conread position: 59-298
Cow position: chr14:33392797-33392558 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 148
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 146, 62

Conread position: 61-231
Cow position: chr14:11654742-11654566 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 50

Conread position: 62-293
Cow position: chr14:20564512-20564286 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 21, 49

Conread position: 68-249
Cow position: chr14:34861754-34861946 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 70-285
Cow position: chr14:25693083-25693299 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 10, 56

Conread position: 114-321
Cow position: chr14:44582588-44582802 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 115-298
Cow position: chr14:45082296-45082481 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 120-298
Cow position: chr14:46390442-46390265 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 83, 138

Conread position: 133-298
Cow position: chr14:42122377-42122213 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 72, 154

Conread position: 136-291
Cow position: chr14:35384420-35384266 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 69, 112

Conread position: 144-293
Cow position: chr14:44690391-44690540 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 77

Conread position: 148-298
Cow position: chr14:13462672-13462822 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 126
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 57, 98

Conread position: 151-298
Cow position: chr14:29774904-29774756 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 54, 119

Conread position: 151-298
Cow position: chr14:45163442-45163587 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 39

Conread position: 162-298
Cow position: chr14:50112588-50112725 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 163-291
Cow position: chr14:50142206-50142335 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 163-298
Cow position: chr14:46502932-46503067 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 42, 61

Show alignments to all cow chromosomes.