Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 19-291
Cow position:
Alignm length: 276
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 57

Conread position: 19-298
Cow position:
Alignm length: 282
Alignm identity: 191
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 99, 11

Conread position: 20-231
Cow position:
Alignm length: 214
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 61

Conread position: 23-290
Cow position:
Alignm length: 270
Alignm identity: 175
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 107, 60

Conread position: 24-274
Cow position:
Alignm length: 254
Alignm identity: 176
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 87

Conread position: 24-298
Cow position:
Alignm length: 279
Alignm identity: 194
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 55, 30

Conread position: 25-279
Cow position:
Alignm length: 261
Alignm identity: 186
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 54, 239

Conread position: 25-291
Cow position:
Alignm length: 282
Alignm identity: 205
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 26, 0

Conread position: 25-292
Cow position:
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 112

Conread position: 26-293
Cow position:
Alignm length: 271
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 9

Conread position: 27-298
Cow position:
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 30-291
Cow position:
Alignm length: 269
Alignm identity: 199
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 24, 158

Conread position: 31-274
Cow position:
Alignm length: 247
Alignm identity: 179
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 32, 17

Conread position: 31-275
Cow position:
Alignm length: 251
Alignm identity: 185
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 49, 70

Conread position: 31-291
Cow position:
Alignm length: 267
Alignm identity: 196
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 49, 7

Conread position: 31-291
Cow position:
Alignm length: 267
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 23

Conread position: 32-221
Cow position:
Alignm length: 193
Alignm identity: 155
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 48, 16

Conread position: 32-240
Cow position:
Alignm length: 212
Alignm identity: 166
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 48, 62

Conread position: 32-256
Cow position:
Alignm length: 231
Alignm identity: 170
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 48, 16

Conread position: 32-264
Cow position:
Alignm length: 236
Alignm identity: 175
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 89, 48

Conread position: 32-265
Cow position:
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-267
Cow position:
Alignm length: 249
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 48, 198

Conread position: 32-268
Cow position:
Alignm length: 243
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 32-273
Cow position:
Alignm length: 248
Alignm identity: 169
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 47, 13

Conread position: 32-274
Cow position:
Alignm length: 246
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-274
Cow position:
Alignm length: 249
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 221

Conread position: 32-277
Cow position:
Alignm length: 251
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-278
Cow position:
Alignm length: 251
Alignm identity: 178
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 61, 48

Conread position: 32-279
Cow position:
Alignm length: 258
Alignm identity: 189
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 48, 246

Conread position: 32-285
Cow position:
Alignm length: 260
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 113

Conread position: 32-285
Cow position:
Alignm length: 260
Alignm identity: 193
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 48, 191

Conread position: 32-288
Cow position:
Alignm length: 258
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 178

Conread position: 32-289
Cow position:
Alignm length: 265
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 32-290
Cow position:
Alignm length: 261
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 60

Conread position: 32-290
Cow position:
Alignm length: 261
Alignm identity: 180
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 89, 11

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 190
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 238

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 190
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 47, 128

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 268
Alignm identity: 188
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 47, 12

Conread position: 32-292
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 44, 6

Conread position: 32-292
Cow position:
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-293
Cow position:
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 137

Conread position: 32-293
Cow position:
Alignm length: 270
Alignm identity: 190
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 81

Conread position: 32-294
Cow position:
Alignm length: 273
Alignm identity: 196
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 48, 67

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 6

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 147

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 96

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 203
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 12

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 240

Conread position: 32-298
Cow position:
Alignm length: 269
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 50

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 275
Alignm identity: 194
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 47, 38

Conread position: 32-298
Cow position:
Alignm length: 285
Alignm identity: 206
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 48, 112

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 192
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 46, 95

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 50

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 106

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 48

Conread position: 32-301
Cow position:
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 273

Conread position: 32-305
Cow position:
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 100

Conread position: 32-313
Cow position:
Alignm length: 290
Alignm identity: 195
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 12

Conread position: 32-314
Cow position:
Alignm length: 289
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 260

Conread position: 33-186
Cow position:
Alignm length: 159
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 47, 5

Conread position: 33-293
Cow position:
Alignm length: 264
Alignm identity: 181
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 46, 59

Conread position: 34-261
Cow position:
Alignm length: 232
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 11

Conread position: 34-293
Cow position:
Alignm length: 264
Alignm identity: 179
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 76, 124

Conread position: 34-298
Cow position:
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 34-299
Cow position:
Alignm length: 274
Alignm identity: 199
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 23, 125

Conread position: 35-276
Cow position:
Alignm length: 248
Alignm identity: 180
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 10

Conread position: 35-285
Cow position:
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 86

Conread position: 35-289
Cow position:
Alignm length: 261
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-291
Cow position:
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 118

Conread position: 35-298
Cow position:
Alignm length: 272
Alignm identity: 199
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 50, 79

Conread position: 35-298
Cow position:
Alignm length: 270
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 36-301
Cow position:
Alignm length: 269
Alignm identity: 185
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 15, 31

Conread position: 38-266
Cow position:
Alignm length: 232
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-279
Cow position:
Alignm length: 246
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 38-290
Cow position:
Alignm length: 256
Alignm identity: 185
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 42, 54

Conread position: 38-291
Cow position:
Alignm length: 277
Alignm identity: 211
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 42, 0

Conread position: 38-291
Cow position:
Alignm length: 262
Alignm identity: 193
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position:
Alignm length: 267
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 126

Conread position: 38-298
Cow position:
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 162

Conread position: 38-298
Cow position:
Alignm length: 263
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 83, 44

Conread position: 38-298
Cow position:
Alignm length: 270
Alignm identity: 201
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 42, 137

Conread position: 45-298
Cow position:
Alignm length: 257
Alignm identity: 188
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 35, 47

Conread position: 45-298
Cow position:
Alignm length: 262
Alignm identity: 187
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 39, 101

Conread position: 47-298
Cow position:
Alignm length: 257
Alignm identity: 188
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 41

Conread position: 47-298
Cow position:
Alignm length: 259
Alignm identity: 191
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 38, 76

Conread position: 49-291
Cow position:
Alignm length: 251
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 138

Conread position: 49-293
Cow position:
Alignm length: 253
Alignm identity: 194
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 5, 99

Conread position: 52-293
Cow position:
Alignm length: 244
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 69, 22

Conread position: 53-238
Cow position:
Alignm length: 189
Alignm identity: 154
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 0

Conread position: 53-248
Cow position:
Alignm length: 209
Alignm identity: 147
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 45

Conread position: 53-293
Cow position:
Alignm length: 243
Alignm identity: 167
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 152, 20

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 191
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 27, 193

Conread position: 53-298
Cow position:
Alignm length: 254
Alignm identity: 184
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 27, 0

Conread position: 54-276
Cow position:
Alignm length: 226
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 137

Conread position: 54-291
Cow position:
Alignm length: 242
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 5

Conread position: 55-298
Cow position:
Alignm length: 250
Alignm identity: 186
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 22, 87

Conread position: 59-279
Cow position:
Alignm length: 232
Alignm identity: 174
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 21, 0

Conread position: 59-298
Cow position:
Alignm length: 245
Alignm identity: 183
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 20, 56

Conread position: 59-298
Cow position:
Alignm length: 243
Alignm identity: 168
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 20, 32

Conread position: 59-299
Cow position:
Alignm length: 245
Alignm identity: 171
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 20, 66

Conread position: 62-231
Cow position:
Alignm length: 175
Alignm identity: 127
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 22, 140

Conread position: 62-243
Cow position:
Alignm length: 188
Alignm identity: 152
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 0

Conread position: 71-292
Cow position:
Alignm length: 223
Alignm identity: 168
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 134, 54

Conread position: 92-298
Cow position:
Alignm length: 210
Alignm identity: 160
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 35, 25

Conread position: 109-298
Cow position:
Alignm length: 191
Alignm identity: 140
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 96, 169

Conread position: 115-295
Cow position:
Alignm length: 183
Alignm identity: 125
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 118-274
Cow position:
Alignm length: 158
Alignm identity: 115
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 88, 36

Conread position: 120-291
Cow position:
Alignm length: 174
Alignm identity: 131
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 85, 0

Conread position: 123-263
Cow position:
Alignm length: 142
Alignm identity: 114
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 82, 0

Conread position: 123-279
Cow position:
Alignm length: 158
Alignm identity: 124
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 82, 121

Conread position: 133-290
Cow position:
Alignm length: 158
Alignm identity: 122
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 134-298
Cow position:
Alignm length: 166
Alignm identity: 129
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 72, 0

Conread position: 137-291
Cow position:
Alignm length: 156
Alignm identity: 129
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 69, 0

Conread position: 141-298
Cow position:
Alignm length: 165
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 163-298
Cow position:
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 43, 0

Show alignments to all cow chromosomes.