Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 13-294
Cow position: chr16:41753878-41753594 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 194
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 24, 9

Conread position: 26-239
Cow position: chr16:28436719-28436499 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 91

Conread position: 26-298
Cow position: chr16:23809104-23809372 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 54

Conread position: 29-298
Cow position: chr16:2410182-2409912 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 109

Conread position: 30-235
Cow position: chr16:10565029-10564824 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 49, 8

Conread position: 30-267
Cow position: chr16:4301450-4301203 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 20

Conread position: 30-279
Cow position: chr16:39366121-39365873 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 98

Conread position: 30-290
Cow position: chr16:33277-33540 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 92

Conread position: 30-294
Cow position: chr16:41762571-41762837 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 49, 15

Conread position: 30-298
Cow position: chr16:51403126-51402854 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 18

Conread position: 31-246
Cow position: chr16:29034693-29034908 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 49

Conread position: 31-291
Cow position: chr16:29047774-29048037 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 21

Conread position: 31-298
Cow position: chr16:51084905-51085179 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 32-182
Cow position: chr16:406287-406132 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 32-224
Cow position: chr16:29984772-29984967 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 136
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 47, 25

Conread position: 32-253
Cow position: chr16:41165920-41165695 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 148

Conread position: 32-257
Cow position: chr16:16898209-16898434 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 177
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 26

Conread position: 32-257
Cow position: chr16:16991597-16991829 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 6

Conread position: 32-273
Cow position: chr16:32937272-32937510 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 46, 128

Conread position: 32-274
Cow position: chr16:40557195-40556947 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 168

Conread position: 32-274
Cow position: chr16:54324585-54324337 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 0

Conread position: 32-275
Cow position: chr16:2482384-2482137 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 32-279
Cow position: chr16:39824675-39824923 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 48, 56

Conread position: 32-280
Cow position: chr16:55049146-55048903 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 177, 13

Conread position: 32-288
Cow position: chr16:1432939-1433196 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 43, 227

Conread position: 32-290
Cow position: chr16:14665063-14664799 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 6

Conread position: 32-290
Cow position: chr16:25456731-25456467 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr16:1566703-1566447 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 13

Conread position: 32-291
Cow position: chr16:10374846-10374587 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 205

Conread position: 32-291
Cow position: chr16:10439008-10439273 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr16:12537198-12536937 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 182

Conread position: 32-291
Cow position: chr16:19778899-19778637 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 60

Conread position: 32-291
Cow position: chr16:25342721-25342986 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr16:27594257-27594522 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr16:28196491-28196226 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr16:37480106-37479841 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 76

Conread position: 32-291
Cow position: chr16:40295411-40295152 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position: chr16:47475000-47475258 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 173
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 47, 6

Conread position: 32-292
Cow position: chr16:337940-338201 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 16

Conread position: 32-292
Cow position: chr16:2238014-2237755 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 91

Conread position: 32-293
Cow position: chr16:5871636-5871910 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 32-293
Cow position: chr16:18497567-18497299 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-293
Cow position: chr16:49221154-49220901 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 13

Conread position: 32-298
Cow position: chr16:838068-838334 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 47, 75

Conread position: 32-298
Cow position: chr16:3088454-3088182 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr16:5485479-5485745 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 90

Conread position: 32-298
Cow position: chr16:5527635-5527364 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 194

Conread position: 32-298
Cow position: chr16:5662589-5662861 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr16:8815355-8815086 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position: chr16:16240537-16240272 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 107

Conread position: 32-298
Cow position: chr16:20202724-20202997 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position: chr16:23984050-23984324 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 32-298
Cow position: chr16:25086367-25086633 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 43

Conread position: 32-298
Cow position: chr16:25258553-25258824 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 87

Conread position: 32-298
Cow position: chr16:26978875-26979127 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 82, 36

Conread position: 32-298
Cow position: chr16:27732632-27732360 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr16:28470320-28470040 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 33-254
Cow position: chr16:16520017-16519793 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 5

Conread position: 33-279
Cow position: chr16:49233729-49233487 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 87

Conread position: 33-291
Cow position: chr16:2726462-2726200 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 92

Conread position: 33-292
Cow position: chr16:16270384-16270120 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 195

Conread position: 33-298
Cow position: chr16:16229071-16229329 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 47, 116

Conread position: 34-273
Cow position: chr16:9931485-9931729 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 42, 195

Conread position: 34-279
Cow position: chr16:18667140-18667389 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 44

Conread position: 34-298
Cow position: chr16:15568008-15568279 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 35-223
Cow position: chr16:49255480-49255286 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 157
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 45, 0

Conread position: 35-255
Cow position: chr16:34504298-34504521 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 23

Conread position: 35-292
Cow position: chr16:47627895-47627634 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 179
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 57

Conread position: 35-298
Cow position: chr16:1860988-1861257 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 240

Conread position: 35-298
Cow position: chr16:3330689-3330951 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 19

Conread position: 35-298
Cow position: chr16:15185832-15186100 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 239

Conread position: 35-298
Cow position: chr16:23535144-23534879 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 16

Conread position: 35-298
Cow position: chr16:34531050-34531309 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 41

Conread position: 35-314
Cow position: chr16:4649926-4649650 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 19, 25

Conread position: 38-248
Cow position: chr16:5890756-5890972 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-290
Cow position: chr16:25442385-25442643 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position: chr16:1959860-1959604 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 38

Conread position: 39-291
Cow position: chr16:43896505-43896247 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 40-279
Cow position: chr16:19149841-19149599 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 14

Conread position: 45-298
Cow position: chr16:18618354-18618107 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 182
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 10, 31

Conread position: 47-272
Cow position: chr16:23671468-23671694 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 33, 14

Conread position: 47-293
Cow position: chr16:41685487-41685241 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 195
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 33, 79

Conread position: 53-262
Cow position: chr16:25001519-25001308 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 23, 161

Conread position: 53-290
Cow position: chr16:27005805-27006045 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 69, 192

Conread position: 53-291
Cow position: chr16:5119248-5119004 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 53-298
Cow position: chr16:28169550-28169300 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 9

Conread position: 54-298
Cow position: chr16:12955773-12955535 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 26, 35

Conread position: 56-298
Cow position: chr16:25933966-25934208 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 140, 25

Conread position: 58-298
Cow position: chr16:7675676-7675436 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 27, 63

Conread position: 59-274
Cow position: chr16:44669621-44669400 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 59-286
Cow position: chr16:28158348-28158577 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 59-291
Cow position: chr16:27823471-27823235 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 169

Conread position: 60-231
Cow position: chr16:53092265-53092438 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 23, 50

Conread position: 62-291
Cow position: chr16:48333802-48333579 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 11

Conread position: 65-293
Cow position: chr16:42735790-42735569 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 56, 8

Conread position: 70-298
Cow position: chr16:26664526-26664748 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 136, 13

Conread position: 93-289
Cow position: chr16:27712367-27712172 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 112, 28

Conread position: 114-291
Cow position: chr16:20193336-20193157 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 146
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 7, 0

Conread position: 120-275
Cow position: chr16:23251127-23250971 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 85, 0

Conread position: 126-298
Cow position: chr16:43846368-43846195 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 19

Conread position: 132-298
Cow position: chr16:7465459-7465626 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 25, 128

Conread position: 133-273
Cow position: chr16:4474751-4474609 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 135-298
Cow position: chr16:3526168-3525999 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 70, 143

Conread position: 136-293
Cow position: chr16:3828481-3828325 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 69, 84

Conread position: 154-291
Cow position: chr16:31588302-31588159 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 41

Show alignments to all cow chromosomes.