Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 13-294
Cow position:
Alignm length: 289
Alignm identity: 194
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 24, 9

Conread position: 26-239
Cow position:
Alignm length: 222
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 91

Conread position: 26-298
Cow position:
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 54

Conread position: 29-298
Cow position:
Alignm length: 276
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 51, 109

Conread position: 30-235
Cow position:
Alignm length: 211
Alignm identity: 154
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 49, 8

Conread position: 30-267
Cow position:
Alignm length: 250
Alignm identity: 175
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 20

Conread position: 30-279
Cow position:
Alignm length: 256
Alignm identity: 180
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 98

Conread position: 30-290
Cow position:
Alignm length: 267
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 92

Conread position: 30-294
Cow position:
Alignm length: 273
Alignm identity: 193
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 49, 15

Conread position: 30-298
Cow position:
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 18

Conread position: 31-246
Cow position:
Alignm length: 218
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 49

Conread position: 31-291
Cow position:
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 21

Conread position: 31-298
Cow position:
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 32-182
Cow position:
Alignm length: 156
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 32-224
Cow position:
Alignm length: 197
Alignm identity: 136
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 47, 25

Conread position: 32-253
Cow position:
Alignm length: 228
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 148

Conread position: 32-257
Cow position:
Alignm length: 229
Alignm identity: 177
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 26

Conread position: 32-257
Cow position:
Alignm length: 234
Alignm identity: 161
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 6

Conread position: 32-273
Cow position:
Alignm length: 248
Alignm identity: 180
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 46, 128

Conread position: 32-274
Cow position:
Alignm length: 250
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 168

Conread position: 32-274
Cow position:
Alignm length: 249
Alignm identity: 182
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 0

Conread position: 32-275
Cow position:
Alignm length: 250
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 32-279
Cow position:
Alignm length: 252
Alignm identity: 179
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 48, 56

Conread position: 32-280
Cow position:
Alignm length: 250
Alignm identity: 172
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 177, 13

Conread position: 32-288
Cow position:
Alignm length: 263
Alignm identity: 196
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 43, 227

Conread position: 32-290
Cow position:
Alignm length: 266
Alignm identity: 197
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 6

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 196
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 13

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 205

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 182

Conread position: 32-291
Cow position:
Alignm length: 264
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 60

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 76

Conread position: 32-291
Cow position:
Alignm length: 264
Alignm identity: 195
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position:
Alignm length: 264
Alignm identity: 173
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 47, 6

Conread position: 32-292
Cow position:
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 16

Conread position: 32-292
Cow position:
Alignm length: 264
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 91

Conread position: 32-293
Cow position:
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 32-293
Cow position:
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-293
Cow position:
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 13

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 47, 75

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 269
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 90

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 194

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 107

Conread position: 32-298
Cow position:
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 32-298
Cow position:
Alignm length: 269
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 43

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 87

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 194
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 82, 36

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 281
Alignm identity: 207
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 33-254
Cow position:
Alignm length: 227
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 5

Conread position: 33-279
Cow position:
Alignm length: 250
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 87

Conread position: 33-291
Cow position:
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 92

Conread position: 33-292
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 195

Conread position: 33-298
Cow position:
Alignm length: 269
Alignm identity: 200
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 47, 116

Conread position: 34-273
Cow position:
Alignm length: 246
Alignm identity: 182
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 42, 195

Conread position: 34-279
Cow position:
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 44

Conread position: 34-298
Cow position:
Alignm length: 272
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 35-223
Cow position:
Alignm length: 195
Alignm identity: 157
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 45, 0

Conread position: 35-255
Cow position:
Alignm length: 227
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 23

Conread position: 35-292
Cow position:
Alignm length: 264
Alignm identity: 179
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 57

Conread position: 35-298
Cow position:
Alignm length: 271
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 240

Conread position: 35-298
Cow position:
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 19

Conread position: 35-298
Cow position:
Alignm length: 270
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 239

Conread position: 35-298
Cow position:
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 16

Conread position: 35-298
Cow position:
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 41

Conread position: 35-314
Cow position:
Alignm length: 287
Alignm identity: 192
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 19, 25

Conread position: 38-248
Cow position:
Alignm length: 217
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-290
Cow position:
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position:
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 38

Conread position: 39-291
Cow position:
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 40-279
Cow position:
Alignm length: 248
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 14

Conread position: 45-298
Cow position:
Alignm length: 257
Alignm identity: 182
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 10, 31

Conread position: 47-272
Cow position:
Alignm length: 231
Alignm identity: 175
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 33, 14

Conread position: 47-293
Cow position:
Alignm length: 255
Alignm identity: 195
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 33, 79

Conread position: 53-262
Cow position:
Alignm length: 215
Alignm identity: 168
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 23, 161

Conread position: 53-290
Cow position:
Alignm length: 242
Alignm identity: 170
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 69, 192

Conread position: 53-291
Cow position:
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 9

Conread position: 54-298
Cow position:
Alignm length: 248
Alignm identity: 172
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 26, 35

Conread position: 56-298
Cow position:
Alignm length: 248
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 140, 25

Conread position: 58-298
Cow position:
Alignm length: 245
Alignm identity: 177
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 27, 63

Conread position: 59-274
Cow position:
Alignm length: 222
Alignm identity: 160
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 59-286
Cow position:
Alignm length: 230
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 59-291
Cow position:
Alignm length: 240
Alignm identity: 162
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 169

Conread position: 60-231
Cow position:
Alignm length: 175
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 23, 50

Conread position: 62-291
Cow position:
Alignm length: 233
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 11

Conread position: 65-293
Cow position:
Alignm length: 231
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 56, 8

Conread position: 70-298
Cow position:
Alignm length: 231
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 136, 13

Conread position: 93-289
Cow position:
Alignm length: 199
Alignm identity: 148
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 112, 28

Conread position: 114-291
Cow position:
Alignm length: 180
Alignm identity: 146
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 7, 0

Conread position: 120-275
Cow position:
Alignm length: 157
Alignm identity: 123
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 85, 0

Conread position: 126-298
Cow position:
Alignm length: 176
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 19

Conread position: 132-298
Cow position:
Alignm length: 169
Alignm identity: 130
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 25, 128

Conread position: 133-273
Cow position:
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 135-298
Cow position:
Alignm length: 171
Alignm identity: 124
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 70, 143

Conread position: 136-293
Cow position:
Alignm length: 159
Alignm identity: 122
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 69, 84

Conread position: 154-291
Cow position:
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 41

Show alignments to all cow chromosomes.