Cow genome map
| Conread name: | Ss1.1-rsag040_h9.5 |
| Conread position: | 18-267 |
| Cow position: | chr17:1704183-1704436 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 30-273 |
| Cow position: | chr17:4675429-4675674 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 31-287 |
| Cow position: | chr17:28027182-28026919 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 31-291 |
| Cow position: | chr17:733018-732753 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 31-298 |
| Cow position: | chr17:15142031-15141761 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 32-170 |
| Cow position: | chr17:22559289-22559423 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 89, 47 |
| Conread position: | 32-186 |
| Cow position: | chr17:33284521-33284375 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 6 |
| Conread position: | 32-212 |
| Cow position: | chr17:2175121-2175289 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 32-231 |
| Cow position: | chr17:2580946-2581151 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-270 |
| Cow position: | chr17:23038892-23039132 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 32-274 |
| Cow position: | chr17:8203263-8203502 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 89, 116 |
| Conread position: | 32-285 |
| Cow position: | chr17:16898760-16898490 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 32-290 |
| Cow position: | chr17:5227947-5228210 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 156 |
| Conread position: | 32-290 |
| Cow position: | chr17:23323124-23322860 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr17:3654965-3654700 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr17:11784182-11784456 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr17:13967251-13967515 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 161 |
| Conread position: | 32-291 |
| Cow position: | chr17:14936646-14936383 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 32-291 |
| Cow position: | chr17:15326603-15326869 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr17:15437108-15437373 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 201 |
| Conread position: | 32-291 |
| Cow position: | chr17:39049539-39049804 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr17:43989826-43990091 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 224 |
| Conread position: | 32-293 |
| Cow position: | chr17:20403743-20404009 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 222 |
| Conread position: | 32-295 |
| Cow position: | chr17:251460-251737 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 43, 193 |
| Conread position: | 32-298 |
| Cow position: | chr17:182900-183167 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 32-298 |
| Cow position: | chr17:2077670-2077396 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr17:3640580-3640309 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 32-298 |
| Cow position: | chr17:4083343-4083609 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 48, 194 |
| Conread position: | 32-298 |
| Cow position: | chr17:6261185-6261455 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 32-298 |
| Cow position: | chr17:9080096-9079825 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 261 |
| Conread position: | 32-298 |
| Cow position: | chr17:14215701-14215452 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 32-298 |
| Cow position: | chr17:14240829-14241100 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 242 |
| Conread position: | 32-298 |
| Cow position: | chr17:15852017-15852289 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 32-298 |
| Cow position: | chr17:20080557-20080300 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 6 |
| Conread position: | 32-298 |
| Cow position: | chr17:20086445-20086180 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 32-298 |
| Cow position: | chr17:24783486-24783758 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr17:27793457-27793187 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr17:34157446-34157718 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr17:40806133-40806403 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 33-299 |
| Cow position: | chr17:16121255-16121009 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 35-203 |
| Cow position: | chr17:18195114-18195284 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 35-291 |
| Cow position: | chr17:24028676-24028413 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 35-298 |
| Cow position: | chr17:11086399-11086131 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 38-274 |
| Cow position: | chr17:4783484-4783250 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 83, 36 |
| Conread position: | 38-279 |
| Cow position: | chr17:4061433-4061679 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 184 |
| Conread position: | 38-298 |
| Cow position: | chr17:2263469-2263735 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 38-298 |
| Cow position: | chr17:19267504-19267249 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 163, 13 |
| Conread position: | 39-181 |
| Cow position: | chr17:20230606-20230748 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 41, 84 |
| Conread position: | 39-285 |
| Cow position: | chr17:20099144-20098894 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 45-285 |
| Cow position: | chr17:15372552-15372795 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 45-298 |
| Cow position: | chr17:2246750-2246490 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 45-298 |
| Cow position: | chr17:6069880-6070139 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 46-298 |
| Cow position: | chr17:3707451-3707201 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 47-298 |
| Cow position: | chr17:42267001-42267252 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 49-280 |
| Cow position: | chr17:22133605-22133844 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 52-293 |
| Cow position: | chr17:20489657-20489895 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 112 |
| Conread position: | 52-298 |
| Cow position: | chr17:28874129-28873886 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 61 |
| Conread position: | 53-266 |
| Cow position: | chr17:14039690-14039473 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 54-291 |
| Cow position: | chr17:29302102-29302346 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 56-298 |
| Cow position: | chr17:21418902-21419150 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 59-291 |
| Cow position: | chr17:6121144-6121375 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 59-293 |
| Cow position: | chr17:135981-136219 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 59-298 |
| Cow position: | chr17:24335912-24336150 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 60-303 |
| Cow position: | chr17:1656516-1656283 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 145, 20 |
| Conread position: | 64-280 |
| Cow position: | chr17:150543-150333 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 5, 17 |
| Conread position: | 85-291 |
| Cow position: | chr17:39821-40029 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 92-291 |
| Cow position: | chr17:17257302-17257101 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 113-291 |
| Cow position: | chr17:2554866-2554686 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 123-291 |
| Cow position: | chr17:20415040-20414871 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 132-226 |
| Cow position: | chr17:6240753-6240658 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 132-298 |
| Cow position: | chr17:4346150-4345983 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 138 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 132-298 |
| Cow position: | chr17:19980707-19980540 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 137-291 |
| Cow position: | chr17:1881700-1881854 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 68, 132 |
| Conread position: | 154-298 |
| Cow position: | chr17:20231269-20231414 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 162-298 |
| Cow position: | chr17:34159186-34159322 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 162-299 |
| Cow position: | chr17:22561356-22561493 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 169-298 |
| Cow position: | chr17:33284222-33284096 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 172-291 |
| Cow position: | chr17:45271650-45271530 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.