Cow genome map
| Conread name: | Ss1.1-rsag040_h9.5 |
| Conread position: | 4-298 |
| Cow position: | chr19:40471181-40470890 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 30-291 |
| Cow position: | chr19:342772-343051 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 31-203 |
| Cow position: | chr19:40815972-40815798 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 31-255 |
| Cow position: | chr19:30756753-30756979 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 48, 156 |
| Conread position: | 31-290 |
| Cow position: | chr19:52150146-52149881 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 32-238 |
| Cow position: | chr19:9706638-9706427 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 32-255 |
| Cow position: | chr19:32210538-32210306 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-271 |
| Cow position: | chr19:39834-40078 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 48, 193 |
| Conread position: | 32-274 |
| Cow position: | chr19:48860222-48859978 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 32-289 |
| Cow position: | chr19:40850922-40850668 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 32-290 |
| Cow position: | chr19:376175-375924 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 78 |
| Conread position: | 32-290 |
| Cow position: | chr19:774141-774405 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr19:892099-891837 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 226 |
| Conread position: | 32-291 |
| Cow position: | chr19:1583789-1584055 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr19:7343607-7343869 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 32-291 |
| Cow position: | chr19:16319092-16318827 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-293 |
| Cow position: | chr19:39667005-39666742 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 32-298 |
| Cow position: | chr19:166591-166321 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 48, 197 |
| Conread position: | 32-298 |
| Cow position: | chr19:173798-174068 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 32-298 |
| Cow position: | chr19:206044-206321 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr19:437902-437630 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr19:4387149-4387410 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 32-298 |
| Cow position: | chr19:5730392-5730653 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 32-298 |
| Cow position: | chr19:5899972-5899701 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 240 |
| Conread position: | 32-298 |
| Cow position: | chr19:12774641-12774913 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr19:20106263-20106535 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr19:33874952-33875220 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 32-298 |
| Cow position: | chr19:33943104-33943376 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr19:39184008-39183735 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 33-293 |
| Cow position: | chr19:265192-265456 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 34-298 |
| Cow position: | chr19:1587698-1587428 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 35-298 |
| Cow position: | chr19:2272576-2272308 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 253 |
| Conread position: | 35-298 |
| Cow position: | chr19:28580135-28579857 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 36-272 |
| Cow position: | chr19:1660210-1660446 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 36-273 |
| Cow position: | chr19:16128693-16128938 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 169 |
| Conread position: | 38-293 |
| Cow position: | chr19:161597-161345 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 40-280 |
| Cow position: | chr19:10366575-10366818 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 40-290 |
| Cow position: | chr19:2586755-2586998 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 129 |
| Conread position: | 45-293 |
| Cow position: | chr19:35107244-35106992 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 45-294 |
| Cow position: | chr19:28405166-28404921 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 142 |
| Conread position: | 48-187 |
| Cow position: | chr19:50724103-50724244 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 53-298 |
| Cow position: | chr19:28595088-28595346 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 53-298 |
| Cow position: | chr19:39392069-39392318 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 54-186 |
| Cow position: | chr19:6713115-6712988 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 57-298 |
| Cow position: | chr19:40886178-40885933 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 101 |
| Conread position: | 59-274 |
| Cow position: | chr19:28367505-28367719 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 180 |
| Conread position: | 63-293 |
| Cow position: | chr19:42582885-42582653 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 76-298 |
| Cow position: | chr19:33596182-33595959 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 91-298 |
| Cow position: | chr19:30559787-30559995 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 190 |
| Conread position: | 94-285 |
| Cow position: | chr19:3139573-3139766 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 94-298 |
| Cow position: | chr19:27036042-27035837 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 27, 174 |
| Conread position: | 103-231 |
| Cow position: | chr19:3174996-3175126 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 120-298 |
| Cow position: | chr19:30453724-30453551 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 121-274 |
| Cow position: | chr19:547958-547804 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 132-298 |
| Cow position: | chr19:14159521-14159353 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 73, 92 |
| Conread position: | 133-298 |
| Cow position: | chr19:43146301-43146468 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 147-298 |
| Cow position: | chr19:256944-257094 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 90 |
Show alignments to all cow chromosomes.