Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 14-293
Cow position:
Alignm length: 290
Alignm identity: 217
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 33, 135

Conread position: 16-298
Cow position:
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 19

Conread position: 19-274
Cow position:
Alignm length: 260
Alignm identity: 191
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 35, 19

Conread position: 19-280
Cow position:
Alignm length: 268
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 81

Conread position: 26-290
Cow position:
Alignm length: 276
Alignm identity: 194
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 194

Conread position: 26-298
Cow position:
Alignm length: 278
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 99

Conread position: 29-292
Cow position:
Alignm length: 271
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 16

Conread position: 30-173
Cow position:
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 74

Conread position: 30-269
Cow position:
Alignm length: 252
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 8

Conread position: 30-274
Cow position:
Alignm length: 251
Alignm identity: 184
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 10, 39

Conread position: 30-293
Cow position:
Alignm length: 267
Alignm identity: 197
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 91, 47

Conread position: 30-298
Cow position:
Alignm length: 274
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 142

Conread position: 30-298
Cow position:
Alignm length: 277
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 31-181
Cow position:
Alignm length: 156
Alignm identity: 134
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 49, 0

Conread position: 31-253
Cow position:
Alignm length: 230
Alignm identity: 164
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 23, 192

Conread position: 31-279
Cow position:
Alignm length: 253
Alignm identity: 179
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 80, 52

Conread position: 31-290
Cow position:
Alignm length: 266
Alignm identity: 184
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 20, 41

Conread position: 31-298
Cow position:
Alignm length: 277
Alignm identity: 193
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 0

Conread position: 31-298
Cow position:
Alignm length: 275
Alignm identity: 194
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 45, 35

Conread position: 31-298
Cow position:
Alignm length: 273
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 49, 94

Conread position: 32-158
Cow position:
Alignm length: 132
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 32-176
Cow position:
Alignm length: 149
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 92

Conread position: 32-196
Cow position:
Alignm length: 168
Alignm identity: 135
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 48, 0

Conread position: 32-223
Cow position:
Alignm length: 198
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 97

Conread position: 32-226
Cow position:
Alignm length: 201
Alignm identity: 163
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 48, 0

Conread position: 32-254
Cow position:
Alignm length: 228
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 12

Conread position: 32-259
Cow position:
Alignm length: 233
Alignm identity: 133
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 48, 72

Conread position: 32-264
Cow position:
Alignm length: 236
Alignm identity: 183
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 48, 53

Conread position: 32-266
Cow position:
Alignm length: 242
Alignm identity: 166
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 49, 83

Conread position: 32-267
Cow position:
Alignm length: 239
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 89

Conread position: 32-267
Cow position:
Alignm length: 238
Alignm identity: 162
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 83, 68

Conread position: 32-269
Cow position:
Alignm length: 248
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 169

Conread position: 32-274
Cow position:
Alignm length: 245
Alignm identity: 164
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 66, 96

Conread position: 32-274
Cow position:
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-279
Cow position:
Alignm length: 250
Alignm identity: 186
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 84, 48

Conread position: 32-280
Cow position:
Alignm length: 255
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position:
Alignm length: 263
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 196

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 93

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 6

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 136

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 135

Conread position: 32-291
Cow position:
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position:
Alignm length: 264
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 79

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 268
Alignm identity: 196
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 42, 130

Conread position: 32-291
Cow position:
Alignm length: 269
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 196
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 48, 153

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 237

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 191
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 113

Conread position: 32-291
Cow position:
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 12

Conread position: 32-292
Cow position:
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-292
Cow position:
Alignm length: 264
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 121

Conread position: 32-294
Cow position:
Alignm length: 268
Alignm identity: 187
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 68, 12

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 204
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 48, 81

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 87

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 195

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 205
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 48, 12

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 73

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 59

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 32-298
Cow position:
Alignm length: 278
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 199
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 203

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 192
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 47, 6

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 269
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 6

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 279
Alignm identity: 209
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 45, 22

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 127

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 197

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 256

Conread position: 33-291
Cow position:
Alignm length: 273
Alignm identity: 198
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 47, 263

Conread position: 34-289
Cow position:
Alignm length: 259
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 11

Conread position: 34-290
Cow position:
Alignm length: 265
Alignm identity: 196
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 46, 14

Conread position: 34-292
Cow position:
Alignm length: 269
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 86

Conread position: 34-298
Cow position:
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 222

Conread position: 34-298
Cow position:
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 46

Conread position: 35-252
Cow position:
Alignm length: 226
Alignm identity: 176
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 15, 0

Conread position: 35-292
Cow position:
Alignm length: 260
Alignm identity: 191
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 86, 179

Conread position: 35-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 165

Conread position: 35-298
Cow position:
Alignm length: 277
Alignm identity: 202
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 45, 0

Conread position: 35-298
Cow position:
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 10

Conread position: 38-178
Cow position:
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 85, 42

Conread position: 38-298
Cow position:
Alignm length: 268
Alignm identity: 190
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position:
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 16

Conread position: 40-228
Cow position:
Alignm length: 194
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 0

Conread position: 41-285
Cow position:
Alignm length: 252
Alignm identity: 187
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 39, 0

Conread position: 45-260
Cow position:
Alignm length: 222
Alignm identity: 172
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 76, 24

Conread position: 45-264
Cow position:
Alignm length: 231
Alignm identity: 174
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 23, 208

Conread position: 45-275
Cow position:
Alignm length: 238
Alignm identity: 166
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 34, 153

Conread position: 45-298
Cow position:
Alignm length: 261
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 212

Conread position: 49-298
Cow position:
Alignm length: 256
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 65

Conread position: 49-298
Cow position:
Alignm length: 256
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 77

Conread position: 50-232
Cow position:
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 52-245
Cow position:
Alignm length: 201
Alignm identity: 153
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 152

Conread position: 53-260
Cow position:
Alignm length: 210
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 68

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 53-298
Cow position:
Alignm length: 253
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 171

Conread position: 53-298
Cow position:
Alignm length: 249
Alignm identity: 185
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 27, 41

Conread position: 53-298
Cow position:
Alignm length: 260
Alignm identity: 186
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 26, 100

Conread position: 54-289
Cow position:
Alignm length: 238
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 69, 14

Conread position: 54-291
Cow position:
Alignm length: 244
Alignm identity: 185
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 26, 198

Conread position: 54-291
Cow position:
Alignm length: 244
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 202

Conread position: 54-298
Cow position:
Alignm length: 261
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 55-246
Cow position:
Alignm length: 193
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 150, 66

Conread position: 56-298
Cow position:
Alignm length: 249
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 82

Conread position: 57-203
Cow position:
Alignm length: 152
Alignm identity: 118
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 59-274
Cow position:
Alignm length: 218
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 62, 0

Conread position: 59-291
Cow position:
Alignm length: 239
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 59-298
Cow position:
Alignm length: 243
Alignm identity: 170
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 22, 226

Conread position: 63-298
Cow position:
Alignm length: 247
Alignm identity: 176
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 16, 87

Conread position: 63-303
Cow position:
Alignm length: 247
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 136

Conread position: 78-201
Cow position:
Alignm length: 124
Alignm identity: 102
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 78-293
Cow position:
Alignm length: 218
Alignm identity: 169
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 43, 146

Conread position: 85-298
Cow position:
Alignm length: 217
Alignm identity: 171
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 8, 151

Conread position: 91-292
Cow position:
Alignm length: 204
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 158

Conread position: 96-298
Cow position:
Alignm length: 205
Alignm identity: 157
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 28, 5

Conread position: 107-285
Cow position:
Alignm length: 184
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 109-291
Cow position:
Alignm length: 185
Alignm identity: 148
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 12, 0

Conread position: 115-293
Cow position:
Alignm length: 181
Alignm identity: 152
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 75

Conread position: 120-298
Cow position:
Alignm length: 181
Alignm identity: 147
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 85, 0

Conread position: 124-280
Cow position:
Alignm length: 158
Alignm identity: 124
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 81, 0

Conread position: 124-285
Cow position:
Alignm length: 167
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 11, 19

Conread position: 132-291
Cow position:
Alignm length: 161
Alignm identity: 129
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 74, 0

Conread position: 133-285
Cow position:
Alignm length: 154
Alignm identity: 117
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 142-298
Cow position:
Alignm length: 160
Alignm identity: 116
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 63, 73

Conread position: 150-298
Cow position:
Alignm length: 149
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 152-291
Cow position:
Alignm length: 143
Alignm identity: 110
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 166-298
Cow position:
Alignm length: 134
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 167-298
Cow position:
Alignm length: 133
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 102

Conread position: 177-292
Cow position:
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 0

Show alignments to all cow chromosomes.