Cow genome map
| Conread name: | Ss1.1-rsag040_h9.5 |
| Conread position: | 24-293 |
| Cow position: | chr20:15066942-15067216 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 218 |
| Conread position: | 30-291 |
| Cow position: | chr20:41364150-41363880 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 170 |
| Conread position: | 31-275 |
| Cow position: | chr20:7573069-7572819 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 31-291 |
| Cow position: | chr20:12436923-12436657 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 32-186 |
| Cow position: | chr20:27896549-27896391 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 151 |
| Conread position: | 32-238 |
| Cow position: | chr20:12570001-12570218 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-240 |
| Cow position: | chr20:30386581-30386367 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 48, 124 |
| Conread position: | 32-279 |
| Cow position: | chr20:27870706-27870959 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-280 |
| Cow position: | chr20:13769352-13769597 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 173, 27 |
| Conread position: | 32-285 |
| Cow position: | chr20:9344453-9344707 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 193 |
| Conread position: | 32-290 |
| Cow position: | chr20:17660243-17659982 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 6 |
| Conread position: | 32-291 |
| Cow position: | chr20:5536442-5536707 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr20:13499607-13499870 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 32-291 |
| Cow position: | chr20:15096395-15096130 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 32-291 |
| Cow position: | chr20:26054192-26053927 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr20:30429769-30430035 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-292 |
| Cow position: | chr20:35126159-35126420 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 48, 230 |
| Conread position: | 32-298 |
| Cow position: | chr20:824265-824537 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr20:8972679-8972408 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 32-298 |
| Cow position: | chr20:9547146-9547416 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 6 |
| Conread position: | 32-298 |
| Cow position: | chr20:13678345-13678070 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 32-298 |
| Cow position: | chr20:13764393-13764665 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 81 |
| Conread position: | 32-298 |
| Cow position: | chr20:15293480-15293751 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 32-298 |
| Cow position: | chr20:16178265-16177978 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 32-298 |
| Cow position: | chr20:19439414-19439686 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr20:20441453-20441181 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr20:21717924-21718204 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 32-298 |
| Cow position: | chr20:21916135-21916407 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr20:23800383-23800654 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 32-298 |
| Cow position: | chr20:24615404-24615141 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 179 |
| Conread position: | 32-298 |
| Cow position: | chr20:28162323-28162595 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 32-298 |
| Cow position: | chr20:29950027-29950295 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 32-298 |
| Cow position: | chr20:30687074-30687355 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 32-302 |
| Cow position: | chr20:35018446-35018714 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 33-293 |
| Cow position: | chr20:13793529-13793791 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 41 |
| Conread position: | 34-298 |
| Cow position: | chr20:23468166-23467898 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 91 |
| Conread position: | 35-169 |
| Cow position: | chr20:19356265-19356398 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 37-293 |
| Cow position: | chr20:20753301-20753054 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 81 |
| Conread position: | 38-291 |
| Cow position: | chr20:21395418-21395678 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 77 |
| Conread position: | 40-298 |
| Cow position: | chr20:5466514-5466779 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 39, 190 |
| Conread position: | 47-298 |
| Cow position: | chr20:10853834-10853582 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 32, 102 |
| Conread position: | 53-274 |
| Cow position: | chr20:28564060-28563834 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 53-288 |
| Cow position: | chr20:13787557-13787801 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 92 |
| Conread position: | 54-274 |
| Cow position: | chr20:32349722-32349947 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 76 |
| Conread position: | 59-231 |
| Cow position: | chr20:2785283-2785109 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 62-293 |
| Cow position: | chr20:37581698-37581930 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 174 |
| Conread position: | 62-298 |
| Cow position: | chr20:25849301-25849060 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 174 |
| Conread position: | 65-291 |
| Cow position: | chr20:25899224-25899451 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 69-292 |
| Cow position: | chr20:12041963-12042186 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 78-298 |
| Cow position: | chr20:10101469-10101252 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 94-293 |
| Cow position: | chr20:19341391-19341591 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 27, 91 |
| Conread position: | 109-293 |
| Cow position: | chr20:19214558-19214744 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 113-254 |
| Cow position: | chr20:14868772-14868627 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 134-289 |
| Cow position: | chr20:9533406-9533556 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 71, 121 |
Show alignments to all cow chromosomes.