Cow genome map
| Conread name: | Ss1.1-rsag040_h9.5 |
| Conread position: | 2-298 |
| Cow position: | chr21:4588419-4588133 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 8-281 |
| Cow position: | chr21:5839601-5839339 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 25, 179 |
| Conread position: | 19-290 |
| Cow position: | chr21:26836787-26837064 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 25-227 |
| Cow position: | chr21:28736801-28736999 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 29-298 |
| Cow position: | chr21:361274-361554 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 30-299 |
| Cow position: | chr21:2539471-2539196 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 245 |
| Conread position: | 31-293 |
| Cow position: | chr21:468508-468774 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 32-172 |
| Cow position: | chr21:12054407-12054262 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-186 |
| Cow position: | chr21:34822600-34822441 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-240 |
| Cow position: | chr21:5012101-5011892 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 162 |
| Conread position: | 32-255 |
| Cow position: | chr21:29003927-29003689 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 32-261 |
| Cow position: | chr21:1286603-1286370 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 32-285 |
| Cow position: | chr21:31639519-31639782 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 32-289 |
| Cow position: | chr21:147534-147794 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 32-289 |
| Cow position: | chr21:47942559-47942819 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 158 |
| Conread position: | 32-290 |
| Cow position: | chr21:24085192-24084928 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 45, 97 |
| Conread position: | 32-290 |
| Cow position: | chr21:31250622-31250866 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 32-291 |
| Cow position: | chr21:30597858-30597595 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 32-291 |
| Cow position: | chr21:31514704-31514441 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 32-291 |
| Cow position: | chr21:33253793-33254056 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 93 |
| Conread position: | 32-291 |
| Cow position: | chr21:37372845-37373101 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 50 |
| Conread position: | 32-291 |
| Cow position: | chr21:38802047-38802312 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr21:40270062-40269797 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-295 |
| Cow position: | chr21:6414414-6414145 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-295 |
| Cow position: | chr21:33710759-33711028 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr21:3780384-3780656 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 81 |
| Conread position: | 32-298 |
| Cow position: | chr21:6626139-6626414 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 48, 98 |
| Conread position: | 32-298 |
| Cow position: | chr21:9893583-9893850 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 32-298 |
| Cow position: | chr21:10568313-10568580 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 32-298 |
| Cow position: | chr21:11507224-11507496 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr21:19612370-19612642 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr21:25125221-25125488 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 6 |
| Conread position: | 32-298 |
| Cow position: | chr21:26635547-26635275 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr21:30563284-30563546 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 32-298 |
| Cow position: | chr21:38023734-38024011 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 131 |
| Conread position: | 33-298 |
| Cow position: | chr21:10851688-10851959 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 34-292 |
| Cow position: | chr21:28613940-28614189 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 183 |
| Conread position: | 34-298 |
| Cow position: | chr21:5018752-5019024 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 35-201 |
| Cow position: | chr21:21520222-21520387 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 35-248 |
| Cow position: | chr21:30654-30871 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 35-289 |
| Cow position: | chr21:27069350-27069091 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 35-292 |
| Cow position: | chr21:13298207-13298467 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 35-298 |
| Cow position: | chr21:2417825-2418086 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 111 |
| Conread position: | 35-298 |
| Cow position: | chr21:2512463-2512731 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 35-298 |
| Cow position: | chr21:34594422-34594162 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 38-280 |
| Cow position: | chr21:27567358-27567607 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 39-292 |
| Cow position: | chr21:2712532-2712772 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 98 |
| Conread position: | 39-293 |
| Cow position: | chr21:26649081-26648837 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 40 |
| Conread position: | 40-292 |
| Cow position: | chr21:20743018-20742764 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 43-292 |
| Cow position: | chr21:1688548-1688294 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 229 |
| Conread position: | 44-298 |
| Cow position: | chr21:2880203-2879944 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 175 |
| Conread position: | 52-298 |
| Cow position: | chr21:18816624-18816377 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 28, 183 |
| Conread position: | 52-298 |
| Cow position: | chr21:28257056-28257303 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 52-302 |
| Cow position: | chr21:21701543-21701796 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 53-298 |
| Cow position: | chr21:27285091-27285336 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 27, 126 |
| Conread position: | 53-298 |
| Cow position: | chr21:34655463-34655712 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 53-298 |
| Cow position: | chr21:39426703-39426946 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 123 |
| Conread position: | 53-298 |
| Cow position: | chr21:44764318-44764072 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 68 |
| Conread position: | 53-298 |
| Cow position: | chr21:47646962-47647214 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 54-288 |
| Cow position: | chr21:26849390-26849157 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 58-292 |
| Cow position: | chr21:34035348-34035117 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 73, 21 |
| Conread position: | 59-244 |
| Cow position: | chr21:4712353-4712531 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 146, 21 |
| Conread position: | 59-298 |
| Cow position: | chr21:218641-218889 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 132 |
| Conread position: | 59-298 |
| Cow position: | chr21:21916880-21917112 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 62-275 |
| Cow position: | chr21:997204-996985 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 210 |
| Conread position: | 62-298 |
| Cow position: | chr21:39090004-39090245 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 112 |
| Conread position: | 68-291 |
| Cow position: | chr21:22751796-22751570 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 194 |
| Conread position: | 70-236 |
| Cow position: | chr21:36979963-36980131 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 70-257 |
| Cow position: | chr21:21025109-21025295 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 116 |
| Conread position: | 78-298 |
| Cow position: | chr21:7591318-7591538 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 187 |
| Conread position: | 92-298 |
| Cow position: | chr21:27150154-27150361 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 29, 192 |
| Conread position: | 127-293 |
| Cow position: | chr21:23804140-23803972 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 134-291 |
| Cow position: | chr21:42915524-42915682 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 140-293 |
| Cow position: | chr21:35143968-35143813 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.