Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 2-298
Cow position:
Alignm length: 299
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 11

Conread position: 8-281
Cow position:
Alignm length: 278
Alignm identity: 194
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 25, 179

Conread position: 19-290
Cow position:
Alignm length: 278
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 25-227
Cow position:
Alignm length: 206
Alignm identity: 157
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 62, 25

Conread position: 29-298
Cow position:
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 16

Conread position: 30-299
Cow position:
Alignm length: 277
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 245

Conread position: 31-293
Cow position:
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 146

Conread position: 32-172
Cow position:
Alignm length: 146
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 32-186
Cow position:
Alignm length: 160
Alignm identity: 131
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 48, 0

Conread position: 32-240
Cow position:
Alignm length: 215
Alignm identity: 167
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 22, 162

Conread position: 32-255
Cow position:
Alignm length: 239
Alignm identity: 165
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 32-261
Cow position:
Alignm length: 236
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 13

Conread position: 32-285
Cow position:
Alignm length: 264
Alignm identity: 173
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 32-289
Cow position:
Alignm length: 263
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 25

Conread position: 32-289
Cow position:
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 158

Conread position: 32-290
Cow position:
Alignm length: 266
Alignm identity: 185
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 45, 97

Conread position: 32-290
Cow position:
Alignm length: 261
Alignm identity: 197
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 48, 13

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 93

Conread position: 32-291
Cow position:
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 50

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-295
Cow position:
Alignm length: 270
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-295
Cow position:
Alignm length: 270
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 81

Conread position: 32-298
Cow position:
Alignm length: 277
Alignm identity: 202
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 98

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-298
Cow position:
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 184
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 6

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 200
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 48, 12

Conread position: 32-298
Cow position:
Alignm length: 284
Alignm identity: 193
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 47, 131

Conread position: 33-298
Cow position:
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 34-292
Cow position:
Alignm length: 265
Alignm identity: 193
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 44, 183

Conread position: 34-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 35-201
Cow position:
Alignm length: 170
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 47

Conread position: 35-248
Cow position:
Alignm length: 218
Alignm identity: 167
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 45, 0

Conread position: 35-289
Cow position:
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-292
Cow position:
Alignm length: 264
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 13

Conread position: 35-298
Cow position:
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 111

Conread position: 35-298
Cow position:
Alignm length: 269
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 35-298
Cow position:
Alignm length: 268
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 17

Conread position: 38-280
Cow position:
Alignm length: 254
Alignm identity: 190
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 42, 7

Conread position: 39-292
Cow position:
Alignm length: 255
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 98

Conread position: 39-293
Cow position:
Alignm length: 256
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 40

Conread position: 40-292
Cow position:
Alignm length: 259
Alignm identity: 190
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 38, 28

Conread position: 43-292
Cow position:
Alignm length: 256
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 229

Conread position: 44-298
Cow position:
Alignm length: 261
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 175

Conread position: 52-298
Cow position:
Alignm length: 253
Alignm identity: 178
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 28, 183

Conread position: 52-298
Cow position:
Alignm length: 250
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 42

Conread position: 52-302
Cow position:
Alignm length: 257
Alignm identity: 182
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 27, 15

Conread position: 53-298
Cow position:
Alignm length: 253
Alignm identity: 186
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 27, 126

Conread position: 53-298
Cow position:
Alignm length: 251
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 42

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 182
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 27, 123

Conread position: 53-298
Cow position:
Alignm length: 249
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 68

Conread position: 53-298
Cow position:
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 54-288
Cow position:
Alignm length: 236
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 68

Conread position: 58-292
Cow position:
Alignm length: 238
Alignm identity: 162
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 73, 21

Conread position: 59-244
Cow position:
Alignm length: 187
Alignm identity: 133
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 146, 21

Conread position: 59-298
Cow position:
Alignm length: 250
Alignm identity: 172
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 21, 132

Conread position: 59-298
Cow position:
Alignm length: 242
Alignm identity: 176
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 20, 45

Conread position: 62-275
Cow position:
Alignm length: 221
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 210

Conread position: 62-298
Cow position:
Alignm length: 243
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 112

Conread position: 68-291
Cow position:
Alignm length: 228
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 194

Conread position: 70-236
Cow position:
Alignm length: 169
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 70-257
Cow position:
Alignm length: 190
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 51, 116

Conread position: 78-298
Cow position:
Alignm length: 223
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 187

Conread position: 92-298
Cow position:
Alignm length: 209
Alignm identity: 164
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 29, 192

Conread position: 127-293
Cow position:
Alignm length: 169
Alignm identity: 121
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 134-291
Cow position:
Alignm length: 159
Alignm identity: 124
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 67, 0

Conread position: 140-293
Cow position:
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 65, 0

Show alignments to all cow chromosomes.