Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 25-257
Cow position: chr22:30653957-30654193 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 151

Conread position: 29-274
Cow position: chr22:13766797-13767045 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 78

Conread position: 30-285
Cow position: chr22:15955577-15955330 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 36

Conread position: 30-289
Cow position: chr22:34601030-34601289 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 194

Conread position: 30-291
Cow position: chr22:5313720-5313992 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 30-292
Cow position: chr22:2563313-2563054 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 8

Conread position: 31-298
Cow position: chr22:13773959-13774225 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 85

Conread position: 31-298
Cow position: chr22:44368044-44367771 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 32-158
Cow position: chr22:44366668-44366537 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 32-186
Cow position: chr22:18814926-18814767 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 32-211
Cow position: chr22:24951996-24952181 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 151
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 0

Conread position: 32-254
Cow position: chr22:12730257-12730027 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 0

Conread position: 32-267
Cow position: chr22:290260-290023 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 59, 48

Conread position: 32-276
Cow position: chr22:695055-695301 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 60

Conread position: 32-285
Cow position: chr22:21034951-21034692 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-288
Cow position: chr22:36860109-36859848 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 190

Conread position: 32-289
Cow position: chr22:44397870-44398131 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position: chr22:1281295-1281032 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 93

Conread position: 32-290
Cow position: chr22:11807302-11807045 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 187

Conread position: 32-290
Cow position: chr22:21590862-21591125 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-290
Cow position: chr22:27308339-27308075 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position: chr22:41474264-41474003 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 69, 20

Conread position: 32-290
Cow position: chr22:44518198-44517938 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 89, 46

Conread position: 32-291
Cow position: chr22:296885-297154 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 228

Conread position: 32-291
Cow position: chr22:325746-325473 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 47, 217

Conread position: 32-291
Cow position: chr22:6022091-6022354 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 237

Conread position: 32-291
Cow position: chr22:19142245-19141985 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-291
Cow position: chr22:21195059-21194793 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr22:32283243-32282978 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr22:33352107-33352360 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 46, 19

Conread position: 32-292
Cow position: chr22:316944-317186 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 174, 50

Conread position: 32-293
Cow position: chr22:521954-521685 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 193
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 48, 71

Conread position: 32-293
Cow position: chr22:23752267-23752003 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 139

Conread position: 32-293
Cow position: chr22:29011834-29011569 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-297
Cow position: chr22:46585125-46584859 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 6

Conread position: 32-298
Cow position: chr22:1268314-1268048 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 67

Conread position: 32-298
Cow position: chr22:1880243-1880515 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 32-298
Cow position: chr22:3276918-3276646 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr22:10908397-10908126 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 240

Conread position: 32-298
Cow position: chr22:11803612-11803342 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 30

Conread position: 32-298
Cow position: chr22:15310501-15310247 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 174, 48

Conread position: 32-298
Cow position: chr22:15852862-15853132 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 6

Conread position: 32-298
Cow position: chr22:16202352-16202623 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 224

Conread position: 32-298
Cow position: chr22:17327019-17326747 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr22:20239398-20239128 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr22:30677275-30677003 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 32-298
Cow position: chr22:31333609-31333338 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position: chr22:34169778-34170045 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 32-298
Cow position: chr22:35670226-35669960 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 32-298
Cow position: chr22:37268606-37268876 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 210

Conread position: 32-298
Cow position: chr22:37292235-37291966 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 32-298
Cow position: chr22:38960545-38960818 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 79

Conread position: 32-298
Cow position: chr22:39468075-39467805 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 32-298
Cow position: chr22:42992614-42992880 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 207

Conread position: 32-298
Cow position: chr22:44492494-44492759 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 92

Conread position: 33-296
Cow position: chr22:8736903-8736641 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 47

Conread position: 34-292
Cow position: chr22:30129024-30129283 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 233

Conread position: 34-298
Cow position: chr22:30146673-30146938 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 233

Conread position: 35-231
Cow position: chr22:45582354-45582553 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 78, 39

Conread position: 35-285
Cow position: chr22:23800774-23800535 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 44, 138

Conread position: 35-290
Cow position: chr22:3305159-3304901 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 73

Conread position: 35-298
Cow position: chr22:559266-558998 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-298
Cow position: chr22:1323595-1323861 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 89

Conread position: 35-298
Cow position: chr22:18028732-18028980 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 90

Conread position: 36-298
Cow position: chr22:538552-538819 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 37-298
Cow position: chr22:9273834-9274077 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 187
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 168, 7

Conread position: 38-208
Cow position: chr22:44478187-44478363 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 143
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 42, 0

Conread position: 38-249
Cow position: chr22:35905942-35905724 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 171
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 40, 0

Conread position: 38-290
Cow position: chr22:6333156-6333411 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 10

Conread position: 38-298
Cow position: chr22:5936724-5936466 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 228, 109

Conread position: 38-298
Cow position: chr22:15352316-15352581 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 15, 196

Conread position: 38-298
Cow position: chr22:44348417-44348157 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 72

Conread position: 38-298
Cow position: chr22:46614748-46615013 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 151

Conread position: 40-293
Cow position: chr22:29037119-29037367 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 82

Conread position: 45-186
Cow position: chr22:36185203-36185350 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 45-290
Cow position: chr22:45014797-45015048 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 191
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 13, 86

Conread position: 45-291
Cow position: chr22:1519578-1519329 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 191
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 33, 134

Conread position: 45-292
Cow position: chr22:19585533-19585292 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 34, 77

Conread position: 47-290
Cow position: chr22:14824245-14823997 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 32, 0

Conread position: 53-199
Cow position: chr22:23509043-23508892 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 53-290
Cow position: chr22:44935422-44935665 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 27, 54

Conread position: 53-293
Cow position: chr22:3803640-3803886 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 142

Conread position: 53-298
Cow position: chr22:46580258-46580007 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 54-298
Cow position: chr22:8120314-8120071 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 36

Conread position: 59-180
Cow position: chr22:38551166-38551295 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 59-285
Cow position: chr22:37141985-37142208 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 21, 64

Conread position: 61-246
Cow position: chr22:4228975-4228785 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 130

Conread position: 70-280
Cow position: chr22:42760249-42760454 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 51, 45

Conread position: 83-298
Cow position: chr22:8664488-8664276 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 38, 25

Conread position: 85-291
Cow position: chr22:29499036-29499244 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 163
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 36, 0

Conread position: 100-298
Cow position: chr22:8880608-8880808 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 159
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 7, 0

Conread position: 109-298
Cow position: chr22:28783634-28783824 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 12, 0

Conread position: 120-293
Cow position: chr22:1861931-1862111 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 27

Conread position: 121-298
Cow position: chr22:18605267-18605090 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 65, 12

Conread position: 126-298
Cow position: chr22:11033878-11034053 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 79, 0

Conread position: 127-298
Cow position: chr22:37135302-37135472 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 142
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 76, 137

Conread position: 132-280
Cow position: chr22:40371588-40371733 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 74, 53

Conread position: 132-291
Cow position: chr22:29352917-29353077 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 76, 0

Conread position: 133-298
Cow position: chr22:48274794-48274634 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 72, 55

Conread position: 134-298
Cow position: chr22:6501368-6501205 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 138
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 72, 130

Conread position: 137-291
Cow position: chr22:21336503-21336658 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 126
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 69, 0

Conread position: 137-293
Cow position: chr22:44459201-44459362 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 0

Conread position: 164-292
Cow position: chr22:38551445-38551572 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 42, 31

Show alignments to all cow chromosomes.