Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 25-238
Cow position:
Alignm length: 224
Alignm identity: 169
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 11, 28

Conread position: 25-293
Cow position:
Alignm length: 273
Alignm identity: 188
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 29, 56

Conread position: 25-298
Cow position:
Alignm length: 276
Alignm identity: 196
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 96, 55

Conread position: 26-291
Cow position:
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 9

Conread position: 30-275
Cow position:
Alignm length: 253
Alignm identity: 182
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 49, 0

Conread position: 30-298
Cow position:
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 31-298
Cow position:
Alignm length: 269
Alignm identity: 189
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 174, 14

Conread position: 32-175
Cow position:
Alignm length: 144
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 32-187
Cow position:
Alignm length: 160
Alignm identity: 130
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 49, 6

Conread position: 32-201
Cow position:
Alignm length: 175
Alignm identity: 140
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 48, 0

Conread position: 32-202
Cow position:
Alignm length: 177
Alignm identity: 140
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 48, 0

Conread position: 32-226
Cow position:
Alignm length: 201
Alignm identity: 159
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 19

Conread position: 32-227
Cow position:
Alignm length: 201
Alignm identity: 120
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 32-231
Cow position:
Alignm length: 206
Alignm identity: 158
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 48, 16

Conread position: 32-273
Cow position:
Alignm length: 246
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 86, 48

Conread position: 32-274
Cow position:
Alignm length: 253
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-280
Cow position:
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-281
Cow position:
Alignm length: 256
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-285
Cow position:
Alignm length: 258
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 66

Conread position: 32-288
Cow position:
Alignm length: 263
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 101

Conread position: 32-290
Cow position:
Alignm length: 266
Alignm identity: 195
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 36

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 196
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 47

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 273
Alignm identity: 203
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 26, 93

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-292
Cow position:
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 48

Conread position: 32-292
Cow position:
Alignm length: 268
Alignm identity: 193
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 22, 16

Conread position: 32-293
Cow position:
Alignm length: 269
Alignm identity: 195
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 166

Conread position: 32-293
Cow position:
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-293
Cow position:
Alignm length: 268
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-293
Cow position:
Alignm length: 269
Alignm identity: 186
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 45

Conread position: 32-298
Cow position:
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 230

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 193
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 46, 135

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 205
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 81

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 184
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 47, 81

Conread position: 33-291
Cow position:
Alignm length: 267
Alignm identity: 190
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 46, 5

Conread position: 33-293
Cow position:
Alignm length: 267
Alignm identity: 193
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 43, 138

Conread position: 33-297
Cow position:
Alignm length: 271
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 187

Conread position: 33-326
Cow position:
Alignm length: 300
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 110

Conread position: 34-191
Cow position:
Alignm length: 163
Alignm identity: 133
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 46, 0

Conread position: 34-298
Cow position:
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 53

Conread position: 35-255
Cow position:
Alignm length: 228
Alignm identity: 177
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 34, 104

Conread position: 35-293
Cow position:
Alignm length: 265
Alignm identity: 188
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 45, 248

Conread position: 35-298
Cow position:
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 258

Conread position: 35-298
Cow position:
Alignm length: 267
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 16

Conread position: 36-291
Cow position:
Alignm length: 258
Alignm identity: 168
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 85

Conread position: 36-293
Cow position:
Alignm length: 264
Alignm identity: 191
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 42, 92

Conread position: 38-293
Cow position:
Alignm length: 260
Alignm identity: 187
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 168, 7

Conread position: 38-298
Cow position:
Alignm length: 267
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 39-298
Cow position:
Alignm length: 271
Alignm identity: 201
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 41, 238

Conread position: 45-298
Cow position:
Alignm length: 260
Alignm identity: 190
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 35, 116

Conread position: 47-299
Cow position:
Alignm length: 272
Alignm identity: 194
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 33, 0

Conread position: 53-298
Cow position:
Alignm length: 251
Alignm identity: 190
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 27, 136

Conread position: 56-274
Cow position:
Alignm length: 222
Alignm identity: 164
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 54, 24

Conread position: 57-291
Cow position:
Alignm length: 241
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 58-293
Cow position:
Alignm length: 238
Alignm identity: 169
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 21, 34

Conread position: 61-298
Cow position:
Alignm length: 246
Alignm identity: 181
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 18, 125

Conread position: 62-290
Cow position:
Alignm length: 232
Alignm identity: 165
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 17, 209

Conread position: 62-298
Cow position:
Alignm length: 246
Alignm identity: 169
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 113-289
Cow position:
Alignm length: 179
Alignm identity: 139
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 8, 0

Conread position: 115-298
Cow position:
Alignm length: 190
Alignm identity: 146
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 6, 83

Conread position: 120-290
Cow position:
Alignm length: 172
Alignm identity: 133
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 85, 0

Conread position: 132-298
Cow position:
Alignm length: 168
Alignm identity: 133
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 74, 0

Conread position: 136-291
Cow position:
Alignm length: 157
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 142-274
Cow position:
Alignm length: 134
Alignm identity: 110
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 63, 0

Conread position: 153-298
Cow position:
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 91

Show alignments to all cow chromosomes.