Cow genome map
| Conread name: | Ss1.1-rsag040_h9.5 |
| Conread position: | 25-238 |
| Cow position: | chr24:19641231-19641452 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 25-293 |
| Cow position: | chr24:40469840-40469579 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 25-298 |
| Cow position: | chr24:6658967-6658698 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 96, 55 |
| Conread position: | 26-291 |
| Cow position: | chr24:33934909-33935177 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 30-275 |
| Cow position: | chr24:17958023-17957771 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 30-298 |
| Cow position: | chr24:19834929-19835203 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 31-298 |
| Cow position: | chr24:12569549-12569814 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 174, 14 |
| Conread position: | 32-175 |
| Cow position: | chr24:14389013-14388872 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 32-187 |
| Cow position: | chr24:6142597-6142754 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 49, 6 |
| Conread position: | 32-201 |
| Cow position: | chr24:6436008-6436182 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-202 |
| Cow position: | chr24:16083256-16083080 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-226 |
| Cow position: | chr24:17322217-17322416 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 32-227 |
| Cow position: | chr24:12699299-12699099 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-231 |
| Cow position: | chr24:6407559-6407762 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 32-273 |
| Cow position: | chr24:14870805-14870563 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 48 |
| Conread position: | 32-274 |
| Cow position: | chr24:8606341-8606593 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-280 |
| Cow position: | chr24:6323832-6323572 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-281 |
| Cow position: | chr24:310392-310647 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-285 |
| Cow position: | chr24:6130336-6130592 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 32-288 |
| Cow position: | chr24:5991701-5991439 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-290 |
| Cow position: | chr24:7063067-7063329 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 32-290 |
| Cow position: | chr24:14383103-14382841 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 32-291 |
| Cow position: | chr24:6036514-6036778 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 32-291 |
| Cow position: | chr24:6963226-6962961 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr24:9545579-9545845 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr24:13044103-13043838 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr24:13233783-13234038 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 47 |
| Conread position: | 32-291 |
| Cow position: | chr24:14755523-14755788 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-291 |
| Cow position: | chr24:16560789-16560521 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 26, 93 |
| Conread position: | 32-291 |
| Cow position: | chr24:44019033-44019298 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-292 |
| Cow position: | chr24:9090527-9090270 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 32-292 |
| Cow position: | chr24:12127583-12127320 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 32-293 |
| Cow position: | chr24:12087724-12087991 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 32-293 |
| Cow position: | chr24:12149770-12149498 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-293 |
| Cow position: | chr24:23504335-23504068 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-293 |
| Cow position: | chr24:36298945-36299201 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 45 |
| Conread position: | 32-298 |
| Cow position: | chr24:147087-146813 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr24:6023563-6023292 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 230 |
| Conread position: | 32-298 |
| Cow position: | chr24:12334206-12333942 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 46, 135 |
| Conread position: | 32-298 |
| Cow position: | chr24:22972588-22972861 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 32-298 |
| Cow position: | chr24:36558026-36557774 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 48, 81 |
| Conread position: | 32-298 |
| Cow position: | chr24:42584235-42583974 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 33-291 |
| Cow position: | chr24:8150791-8150531 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 33-293 |
| Cow position: | chr24:13179494-13179230 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 43, 138 |
| Conread position: | 33-297 |
| Cow position: | chr24:41004012-41004281 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 187 |
| Conread position: | 33-326 |
| Cow position: | chr24:6337908-6338205 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 110 |
| Conread position: | 34-191 |
| Cow position: | chr24:11151710-11151548 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 34-298 |
| Cow position: | chr24:19469073-19468812 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 53 |
| Conread position: | 35-255 |
| Cow position: | chr24:38639049-38639272 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 34, 104 |
| Conread position: | 35-293 |
| Cow position: | chr24:12204816-12204553 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 45, 248 |
| Conread position: | 35-298 |
| Cow position: | chr24:12238813-12239086 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 258 |
| Conread position: | 35-298 |
| Cow position: | chr24:19703023-19703283 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 36-291 |
| Cow position: | chr24:29352320-29352068 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 85 |
| Conread position: | 36-293 |
| Cow position: | chr24:6353666-6353926 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 92 |
| Conread position: | 38-293 |
| Cow position: | chr24:6668217-6667967 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 168, 7 |
| Conread position: | 38-298 |
| Cow position: | chr24:20286382-20286116 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 39-298 |
| Cow position: | chr24:7089473-7089204 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 41, 238 |
| Conread position: | 45-298 |
| Cow position: | chr24:13189710-13189960 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 35, 116 |
| Conread position: | 47-299 |
| Cow position: | chr24:36723359-36723630 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 53-298 |
| Cow position: | chr24:4414001-4413759 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 27, 136 |
| Conread position: | 56-274 |
| Cow position: | chr24:35869027-35868812 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 57-291 |
| Cow position: | chr24:29188836-29189076 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 58-293 |
| Cow position: | chr24:6060968-6061200 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 61-298 |
| Cow position: | chr24:40101363-40101119 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 18, 125 |
| Conread position: | 62-290 |
| Cow position: | chr24:38585577-38585347 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 17, 209 |
| Conread position: | 62-298 |
| Cow position: | chr24:17410010-17410255 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 113-289 |
| Cow position: | chr24:12163841-12164019 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 115-298 |
| Cow position: | chr24:40468781-40468969 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 6, 83 |
| Conread position: | 120-290 |
| Cow position: | chr24:23094407-23094236 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 132-298 |
| Cow position: | chr24:25438231-25438398 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 136-291 |
| Cow position: | chr24:12107932-12107776 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 142-274 |
| Cow position: | chr24:39678950-39679083 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 153-298 |
| Cow position: | chr24:17313026-17312882 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 91 |
Show alignments to all cow chromosomes.