Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 10-186
Cow position: chr28:5567583-5567767 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 19-293
Cow position: chr28:17381397-17381121 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 63

Conread position: 26-298
Cow position: chr28:7811892-7812176 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 54, 0

Conread position: 30-275
Cow position: chr28:33253796-33254047 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 50, 0

Conread position: 31-298
Cow position: chr28:18518964-18518691 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 31-300
Cow position: chr28:15574618-15574881 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 179
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 32-174
Cow position: chr28:5112640-5112493 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 32-212
Cow position: chr28:9180101-9180279 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 89, 50

Conread position: 32-223
Cow position: chr28:6786742-6786930 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 154
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 48, 13

Conread position: 32-227
Cow position: chr28:17665823-17665627 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 48, 159

Conread position: 32-273
Cow position: chr28:27679629-27679869 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 89, 64

Conread position: 32-274
Cow position: chr28:5803506-5803750 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 45, 12

Conread position: 32-275
Cow position: chr28:5814717-5814942 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 89, 6

Conread position: 32-288
Cow position: chr28:11489391-11489134 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 179
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 12

Conread position: 32-289
Cow position: chr28:12408741-12408480 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-289
Cow position: chr28:18100011-18099750 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 47, 18

Conread position: 32-290
Cow position: chr28:15034627-15034363 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 227

Conread position: 32-290
Cow position: chr28:24590341-24590604 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 195

Conread position: 32-291
Cow position: chr28:1459579-1459844 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr28:2085949-2086214 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr28:7059180-7058919 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 32-291
Cow position: chr28:9288434-9288696 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-293
Cow position: chr28:10496007-10495750 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 13

Conread position: 32-293
Cow position: chr28:24559089-24559351 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 81

Conread position: 32-294
Cow position: chr28:5799775-5800044 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 159

Conread position: 32-298
Cow position: chr28:484109-483838 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 32-298
Cow position: chr28:698763-699032 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 187

Conread position: 32-298
Cow position: chr28:1216347-1216081 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 47, 12

Conread position: 32-298
Cow position: chr28:1506350-1506622 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr28:3190768-3190496 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr28:5750219-5749947 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr28:5766215-5766487 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 134

Conread position: 32-298
Cow position: chr28:5938972-5939244 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr28:6537326-6537054 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr28:8380521-8380793 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr28:8719468-8719205 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 43

Conread position: 32-298
Cow position: chr28:10580390-10580116 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr28:11504749-11504485 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 44

Conread position: 32-298
Cow position: chr28:13461455-13461724 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 205

Conread position: 32-298
Cow position: chr28:14703899-14703627 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr28:17389886-17390159 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 32-298
Cow position: chr28:21360981-21361247 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 233

Conread position: 32-298
Cow position: chr28:32304753-32304493 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 88, 19

Conread position: 32-298
Cow position: chr28:32790907-32790643 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position: chr28:34595716-34595988 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 32-360
Cow position: chr28:22041801-22041467 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 145
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 48, 0

Conread position: 33-293
Cow position: chr28:1166404-1166142 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 15

Conread position: 33-298
Cow position: chr28:10645949-10645682 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 70

Conread position: 35-231
Cow position: chr28:18146253-18146057 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 44, 98

Conread position: 35-289
Cow position: chr28:22259666-22259407 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-290
Cow position: chr28:1385921-1385660 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 13

Conread position: 35-290
Cow position: chr28:10615512-10615259 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 40, 13

Conread position: 35-291
Cow position: chr28:1813445-1813185 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-291
Cow position: chr28:6778453-6778192 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-299
Cow position: chr28:7741919-7742190 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 164

Conread position: 38-203
Cow position: chr28:5912779-5912609 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 165

Conread position: 38-292
Cow position: chr28:24669092-24669347 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 19

Conread position: 38-296
Cow position: chr28:26424769-26424507 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position: chr28:7003486-7003756 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 42, 0

Conread position: 40-248
Cow position: chr28:7707195-7706988 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 80, 29

Conread position: 40-257
Cow position: chr28:22236539-22236322 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 149
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 89

Conread position: 40-298
Cow position: chr28:1765470-1765733 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 10, 161

Conread position: 40-298
Cow position: chr28:22457267-22457528 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 178
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 72

Conread position: 40-298
Cow position: chr28:29821483-29821744 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 85

Conread position: 45-290
Cow position: chr28:21566950-21567188 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 161, 21

Conread position: 45-291
Cow position: chr28:1954851-1955104 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 45-298
Cow position: chr28:784153-784412 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 244

Conread position: 45-298
Cow position: chr28:7827481-7827734 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 11, 79

Conread position: 47-275
Cow position: chr28:23023731-23023959 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 32, 49

Conread position: 53-291
Cow position: chr28:22231780-22231543 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 100

Conread position: 53-298
Cow position: chr28:12151830-12152082 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 53-298
Cow position: chr28:25760977-25761220 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 145

Conread position: 53-298
Cow position: chr28:33638049-33638302 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 54-256
Cow position: chr28:13604268-13604470 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 25, 129

Conread position: 59-292
Cow position: chr28:15587583-15587818 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 19, 36

Conread position: 62-293
Cow position: chr28:15684983-15685217 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 57

Conread position: 63-272
Cow position: chr28:31850436-31850222 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 176

Conread position: 66-273
Cow position: chr28:7028259-7028051 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 17

Conread position: 70-298
Cow position: chr28:12648170-12647935 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 78-274
Cow position: chr28:14194033-14193842 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 43

Conread position: 92-298
Cow position: chr28:31591107-31591315 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 29, 0

Conread position: 93-274
Cow position: chr28:10650979-10650797 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 167

Conread position: 96-292
Cow position: chr28:9295804-9295609 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 127

Conread position: 100-293
Cow position: chr28:13721570-13721773 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 21, 13

Conread position: 112-348
Cow position: chr28:34202085-34201851 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 185

Conread position: 115-291
Cow position: chr28:523868-524046 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 116-293
Cow position: chr28:6350396-6350577 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 9, 69

Conread position: 124-298
Cow position: chr28:10067481-10067304 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 72, 0

Conread position: 126-298
Cow position: chr28:1772971-1773143 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 84, 34

Conread position: 132-291
Cow position: chr28:24884443-24884602 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 61, 151

Conread position: 136-287
Cow position: chr28:2117587-2117739 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 127
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 69, 0

Conread position: 138-261
Cow position: chr28:25706013-25705887 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 168-291
Cow position: chr28:15998728-15998852 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 181-298
Cow position: chr28:11953620-11953737 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 24, 43

Show alignments to all cow chromosomes.