Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 13-291
Cow position: chr29:25931092-25930805 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 18-298
Cow position: chr29:27812531-27812803 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 212
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 23, 34

Conread position: 23-293
Cow position: chr29:36596635-36596360 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 189
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 31, 21

Conread position: 24-293
Cow position: chr29:32892224-32892489 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 181, 27

Conread position: 30-295
Cow position: chr29:20252612-20252882 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 50, 24

Conread position: 31-292
Cow position: chr29:9641338-9641071 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 31-298
Cow position: chr29:609200-608928 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 7

Conread position: 31-298
Cow position: chr29:2948929-2948656 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 24, 38

Conread position: 31-298
Cow position: chr29:26163386-26163113 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 169

Conread position: 32-158
Cow position: chr29:18855497-18855366 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 32-184
Cow position: chr29:42938744-42938597 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 92, 50

Conread position: 32-211
Cow position: chr29:29502811-29502626 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 149
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 48, 0

Conread position: 32-246
Cow position: chr29:15997203-15996984 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 32-248
Cow position: chr29:5981260-5981051 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 48, 89

Conread position: 32-248
Cow position: chr29:27262268-27262042 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 32-257
Cow position: chr29:14112995-14113221 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 173
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 47, 6

Conread position: 32-257
Cow position: chr29:19954074-19954299 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 50, 26

Conread position: 32-274
Cow position: chr29:14587367-14587615 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-274
Cow position: chr29:19621829-19621576 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 45, 16

Conread position: 32-290
Cow position: chr29:31182856-31183114 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 50

Conread position: 32-291
Cow position: chr29:409800-409549 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 193
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 173, 48

Conread position: 32-291
Cow position: chr29:5959026-5959288 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-291
Cow position: chr29:10022884-10022619 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr29:19526838-19526573 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr29:19655072-19655331 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 32-291
Cow position: chr29:21431404-21431139 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr29:27180305-27180040 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr29:32558303-32558038 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr29:38207216-38206951 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr29:38228426-38228690 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 16, 31

Conread position: 32-291
Cow position: chr29:40501555-40501294 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 32-291
Cow position: chr29:42803844-42804104 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 48, 12

Conread position: 32-291
Cow position: chr29:45205972-45206243 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 6

Conread position: 32-292
Cow position: chr29:801139-800873 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 51, 66

Conread position: 32-292
Cow position: chr29:32287698-32287960 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-293
Cow position: chr29:647262-647522 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 13

Conread position: 32-293
Cow position: chr29:8664953-8665225 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 262

Conread position: 32-298
Cow position: chr29:47007-46741 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 32-298
Cow position: chr29:2101287-2101558 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 168

Conread position: 32-298
Cow position: chr29:2839894-2839620 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 47, 88

Conread position: 32-298
Cow position: chr29:3175990-3175735 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 173, 13

Conread position: 32-298
Cow position: chr29:5236469-5236744 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr29:6264552-6264280 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr29:7429676-7429400 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 18

Conread position: 32-298
Cow position: chr29:7845838-7846110 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr29:13622410-13622138 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr29:13851425-13851158 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 213

Conread position: 32-298
Cow position: chr29:16024011-16024283 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 32-298
Cow position: chr29:16345661-16345932 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 36

Conread position: 32-298
Cow position: chr29:23977571-23977843 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr29:27979472-27979201 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 142

Conread position: 32-298
Cow position: chr29:34798363-34798092 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 242

Conread position: 32-298
Cow position: chr29:35298358-35298630 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr29:39078263-39077991 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr29:43324967-43325236 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 80

Conread position: 32-298
Cow position: chr29:45461195-45461466 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 106

Conread position: 32-303
Cow position: chr29:30259090-30258829 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 186
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 89, 16

Conread position: 33-293
Cow position: chr29:2747011-2746746 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 194

Conread position: 33-298
Cow position: chr29:2691612-2691882 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 80

Conread position: 33-298
Cow position: chr29:13018147-13018410 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 95

Conread position: 34-279
Cow position: chr29:10822466-10822222 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 46, 14

Conread position: 34-298
Cow position: chr29:13583531-13583801 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 35-264
Cow position: chr29:15946375-15946147 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 171
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 48, 13

Conread position: 38-245
Cow position: chr29:14084676-14084463 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position: chr29:19889039-19889303 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 10, 235

Conread position: 40-293
Cow position: chr29:4633176-4632927 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 186
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 39, 182

Conread position: 47-298
Cow position: chr29:36634919-36634664 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 60

Conread position: 49-291
Cow position: chr29:16172638-16172395 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 88

Conread position: 51-291
Cow position: chr29:45624859-45625103 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 29, 105

Conread position: 53-298
Cow position: chr29:14210083-14209832 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 54-285
Cow position: chr29:37165556-37165790 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 30, 105

Conread position: 55-290
Cow position: chr29:2465405-2465164 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 143

Conread position: 59-285
Cow position: chr29:29704190-29703959 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 59-298
Cow position: chr29:32541569-32541814 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 0

Conread position: 59-302
Cow position: chr29:37309665-37309422 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 57

Conread position: 62-308
Cow position: chr29:16661473-16661729 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 18, 58

Conread position: 73-298
Cow position: chr29:6874376-6874154 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 48, 88

Conread position: 83-290
Cow position: chr29:21459919-21460122 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 122, 34

Conread position: 85-293
Cow position: chr29:252467-252676 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 37

Conread position: 98-298
Cow position: chr29:8625690-8625475 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 186

Conread position: 114-240
Cow position: chr29:3329144-3329272 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 114-290
Cow position: chr29:15625187-15625010 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 7, 66

Conread position: 114-298
Cow position: chr29:9082348-9082167 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 149
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 96, 9

Conread position: 123-298
Cow position: chr29:17151791-17151971 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 70

Conread position: 123-298
Cow position: chr29:17406670-17406844 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 82, 12

Conread position: 124-291
Cow position: chr29:7088387-7088553 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 81, 135

Conread position: 133-269
Cow position: chr29:32641496-32641630 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 104, 0

Conread position: 133-292
Cow position: chr29:42204651-42204811 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 73, 0

Conread position: 133-298
Cow position: chr29:10645856-10645691 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 73, 104

Conread position: 133-298
Cow position: chr29:14452421-14452585 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 72, 45

Conread position: 148-288
Cow position: chr29:21422126-21421987 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 57, 111

Show alignments to all cow chromosomes.