Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 13-291
Cow position:
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 18-298
Cow position:
Alignm length: 286
Alignm identity: 212
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 23, 34

Conread position: 23-293
Cow position:
Alignm length: 279
Alignm identity: 189
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 31, 21

Conread position: 24-293
Cow position:
Alignm length: 274
Alignm identity: 202
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 181, 27

Conread position: 30-295
Cow position:
Alignm length: 272
Alignm identity: 194
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 50, 24

Conread position: 31-292
Cow position:
Alignm length: 268
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 31-298
Cow position:
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 7

Conread position: 31-298
Cow position:
Alignm length: 275
Alignm identity: 199
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 24, 38

Conread position: 31-298
Cow position:
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 169

Conread position: 32-158
Cow position:
Alignm length: 132
Alignm identity: 102
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 32-184
Cow position:
Alignm length: 154
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 92, 50

Conread position: 32-211
Cow position:
Alignm length: 186
Alignm identity: 149
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 48, 0

Conread position: 32-246
Cow position:
Alignm length: 220
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 32-248
Cow position:
Alignm length: 218
Alignm identity: 164
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 48, 89

Conread position: 32-248
Cow position:
Alignm length: 227
Alignm identity: 176
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 32-257
Cow position:
Alignm length: 229
Alignm identity: 173
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 47, 6

Conread position: 32-257
Cow position:
Alignm length: 232
Alignm identity: 167
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 50, 26

Conread position: 32-274
Cow position:
Alignm length: 249
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-274
Cow position:
Alignm length: 256
Alignm identity: 196
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 45, 16

Conread position: 32-290
Cow position:
Alignm length: 261
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 50

Conread position: 32-291
Cow position:
Alignm length: 261
Alignm identity: 193
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 173, 48

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 195
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 16, 31

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 195
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 48, 12

Conread position: 32-291
Cow position:
Alignm length: 275
Alignm identity: 208
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 6

Conread position: 32-292
Cow position:
Alignm length: 270
Alignm identity: 200
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 51, 66

Conread position: 32-292
Cow position:
Alignm length: 267
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-293
Cow position:
Alignm length: 267
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 13

Conread position: 32-293
Cow position:
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 262

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 168

Conread position: 32-298
Cow position:
Alignm length: 276
Alignm identity: 199
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 47, 88

Conread position: 32-298
Cow position:
Alignm length: 269
Alignm identity: 181
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 173, 13

Conread position: 32-298
Cow position:
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 279
Alignm identity: 206
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 18

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 213

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 36

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 142

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 242

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 80

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 199
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 48, 106

Conread position: 32-303
Cow position:
Alignm length: 275
Alignm identity: 186
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 89, 16

Conread position: 33-293
Cow position:
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 194

Conread position: 33-298
Cow position:
Alignm length: 272
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 80

Conread position: 33-298
Cow position:
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 95

Conread position: 34-279
Cow position:
Alignm length: 252
Alignm identity: 188
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 46, 14

Conread position: 34-298
Cow position:
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 35-264
Cow position:
Alignm length: 235
Alignm identity: 171
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 48, 13

Conread position: 38-245
Cow position:
Alignm length: 214
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position:
Alignm length: 268
Alignm identity: 198
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 10, 235

Conread position: 40-293
Cow position:
Alignm length: 259
Alignm identity: 186
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 39, 182

Conread position: 47-298
Cow position:
Alignm length: 258
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 60

Conread position: 49-291
Cow position:
Alignm length: 250
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 88

Conread position: 51-291
Cow position:
Alignm length: 250
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 29, 105

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 54-285
Cow position:
Alignm length: 236
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 30, 105

Conread position: 55-290
Cow position:
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 143

Conread position: 59-285
Cow position:
Alignm length: 232
Alignm identity: 161
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 59-298
Cow position:
Alignm length: 246
Alignm identity: 185
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 0

Conread position: 59-302
Cow position:
Alignm length: 248
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 57

Conread position: 62-308
Cow position:
Alignm length: 260
Alignm identity: 180
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 18, 58

Conread position: 73-298
Cow position:
Alignm length: 230
Alignm identity: 168
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 48, 88

Conread position: 83-290
Cow position:
Alignm length: 211
Alignm identity: 145
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 122, 34

Conread position: 85-293
Cow position:
Alignm length: 211
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 37

Conread position: 98-298
Cow position:
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 186

Conread position: 114-240
Cow position:
Alignm length: 129
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 114-290
Cow position:
Alignm length: 179
Alignm identity: 138
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 7, 66

Conread position: 114-298
Cow position:
Alignm length: 186
Alignm identity: 149
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 96, 9

Conread position: 123-298
Cow position:
Alignm length: 182
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 70

Conread position: 123-298
Cow position:
Alignm length: 177
Alignm identity: 141
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 82, 12

Conread position: 124-291
Cow position:
Alignm length: 169
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 81, 135

Conread position: 133-269
Cow position:
Alignm length: 137
Alignm identity: 111
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 104, 0

Conread position: 133-292
Cow position:
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 73, 0

Conread position: 133-298
Cow position:
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 73, 104

Conread position: 133-298
Cow position:
Alignm length: 167
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 72, 45

Conread position: 148-288
Cow position:
Alignm length: 142
Alignm identity: 116
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 57, 111

Show alignments to all cow chromosomes.