Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 19-291
Cow position: chr4:32213326-32213604 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 25-288
Cow position: chr4:28149584-28149844 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 180
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 57

Conread position: 25-292
Cow position: chr4:11109907-11109642 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 13

Conread position: 30-291
Cow position: chr4:16361086-16361353 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 31-273
Cow position: chr4:34178075-34177835 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 14

Conread position: 31-298
Cow position: chr4:22027286-22027015 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 185
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 7

Conread position: 32-186
Cow position: chr4:31564116-31563957 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 32-186
Cow position: chr4:45106633-45106792 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 129
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 32-274
Cow position: chr4:34221911-34222153 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 44

Conread position: 32-279
Cow position: chr4:33596695-33596938 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 166
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 22

Conread position: 32-280
Cow position: chr4:9847040-9846786 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-280
Cow position: chr4:20067556-20067306 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 13

Conread position: 32-280
Cow position: chr4:64216504-64216267 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 49

Conread position: 32-289
Cow position: chr4:160326-160587 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-290
Cow position: chr4:6206770-6207030 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 183
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 96

Conread position: 32-290
Cow position: chr4:33022471-33022208 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 243

Conread position: 32-290
Cow position: chr4:41960067-41960330 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 167

Conread position: 32-291
Cow position: chr4:357076-357337 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 34, 44

Conread position: 32-291
Cow position: chr4:5881326-5881587 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 38

Conread position: 32-291
Cow position: chr4:9355546-9355811 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr4:14386988-14387254 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr4:17502164-17501899 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr4:27335098-27335371 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 239

Conread position: 32-291
Cow position: chr4:30472380-30472645 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position: chr4:36897543-36897808 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 48, 163

Conread position: 32-291
Cow position: chr4:65665227-65664980 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 48, 93

Conread position: 32-292
Cow position: chr4:14819732-14819472 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 44, 113

Conread position: 32-292
Cow position: chr4:17092695-17092431 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 218

Conread position: 32-292
Cow position: chr4:28832887-28833147 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 72

Conread position: 32-293
Cow position: chr4:20236231-20235963 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 16

Conread position: 32-295
Cow position: chr4:42405779-42406051 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr4:604797-605069 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr4:1929468-1929203 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 50

Conread position: 32-298
Cow position: chr4:1952400-1952128 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr4:3356766-3356495 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 256

Conread position: 32-298
Cow position: chr4:4417224-4417491 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 120

Conread position: 32-298
Cow position: chr4:5443658-5443386 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 167

Conread position: 32-298
Cow position: chr4:6567546-6567818 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr4:6865340-6865069 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 109

Conread position: 32-298
Cow position: chr4:13494497-13494771 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 48, 12

Conread position: 32-298
Cow position: chr4:16060446-16060717 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 32-298
Cow position: chr4:16639777-16640049 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr4:18338021-18338293 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr4:18423349-18423083 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 62

Conread position: 32-298
Cow position: chr4:26876614-26876349 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 48, 16

Conread position: 32-298
Cow position: chr4:28653325-28653056 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 91

Conread position: 32-298
Cow position: chr4:33071667-33071400 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 207
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 48, 129

Conread position: 32-298
Cow position: chr4:33494722-33494994 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr4:41955930-41956202 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position: chr4:43318468-43318197 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 22

Conread position: 32-298
Cow position: chr4:57985159-57985430 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 170

Conread position: 32-298
Cow position: chr4:67682364-67682637 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 168

Conread position: 32-299
Cow position: chr4:25598318-25598046 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 232

Conread position: 33-240
Cow position: chr4:54969884-54970087 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 47, 62

Conread position: 33-247
Cow position: chr4:41978227-41978009 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 44, 195

Conread position: 33-285
Cow position: chr4:14755503-14755245 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 33-298
Cow position: chr4:17924793-17924522 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 203

Conread position: 33-298
Cow position: chr4:44726746-44727017 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 34-298
Cow position: chr4:44780051-44779782 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 161

Conread position: 35-202
Cow position: chr4:27300345-27300175 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 44

Conread position: 35-231
Cow position: chr4:51042118-51041920 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 44, 98

Conread position: 35-290
Cow position: chr4:99047-98785 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 194

Conread position: 35-291
Cow position: chr4:12588499-12588759 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 16

Conread position: 35-291
Cow position: chr4:50847732-50847471 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 170
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 229

Conread position: 35-298
Cow position: chr4:3126981-3127250 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 38-200
Cow position: chr4:69521697-69521858 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 72

Conread position: 38-298
Cow position: chr4:34183480-34183239 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 42, 7

Conread position: 44-293
Cow position: chr4:6489188-6488932 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 233

Conread position: 45-292
Cow position: chr4:2104810-2105056 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 80

Conread position: 45-298
Cow position: chr4:21359406-21359671 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 35, 235

Conread position: 47-239
Cow position: chr4:61986092-61985895 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 29, 46

Conread position: 49-285
Cow position: chr4:60262979-60262741 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 5, 111

Conread position: 52-298
Cow position: chr4:20604880-20605118 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 7

Conread position: 52-298
Cow position: chr4:22742614-22742869 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 138

Conread position: 52-298
Cow position: chr4:37988525-37988776 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 27, 178

Conread position: 53-280
Cow position: chr4:12240036-12239803 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 0

Conread position: 53-285
Cow position: chr4:65041442-65041206 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 157
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 72

Conread position: 53-288
Cow position: chr4:54152427-54152183 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 53-293
Cow position: chr4:44742054-44741831 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 26, 59

Conread position: 53-298
Cow position: chr4:1049075-1048825 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 27, 152

Conread position: 53-298
Cow position: chr4:8702751-8702992 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 24, 35

Conread position: 53-298
Cow position: chr4:10882736-10882988 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 54-291
Cow position: chr4:17244296-17244538 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 12

Conread position: 55-298
Cow position: chr4:43882295-43882544 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 187
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 0

Conread position: 56-289
Cow position: chr4:41191436-41191202 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 43, 35

Conread position: 59-274
Cow position: chr4:49716968-49717185 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 21, 38

Conread position: 59-298
Cow position: chr4:48028062-48028297 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 177
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 62, 18

Conread position: 59-299
Cow position: chr4:19094172-19094418 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 0

Conread position: 60-298
Cow position: chr4:530611-530857 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 28

Conread position: 62-291
Cow position: chr4:827405-827640 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 70-294
Cow position: chr4:19005123-19004895 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 13

Conread position: 71-291
Cow position: chr4:45297357-45297137 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 50, 74

Conread position: 75-298
Cow position: chr4:14139589-14139810 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 138

Conread position: 96-298
Cow position: chr4:6267956-6267752 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 23, 0

Conread position: 116-291
Cow position: chr4:46666176-46666352 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 145
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 5, 21

Conread position: 124-293
Cow position: chr4:20241783-20241954 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 82, 0

Conread position: 124-293
Cow position: chr4:63199210-63199037 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 81, 0

Conread position: 129-293
Cow position: chr4:60649711-60649882 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 92, 0

Conread position: 132-290
Cow position: chr4:59291281-59291123 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 74, 135

Conread position: 132-298
Cow position: chr4:43867466-43867633 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 74, 0

Conread position: 132-298
Cow position: chr4:68837726-68837558 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 56, 0

Conread position: 137-298
Cow position: chr4:67797627-67797468 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 148-298
Cow position: chr4:43898254-43898099 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 157-290
Cow position: chr4:67381975-67382108 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 48, 42

Show alignments to all cow chromosomes.