Cow genome map


           Conread name:
           Ss1.1-rsag040_h9.5
        

               Conread position:
               19-291
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               25-288
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               23, 57
               

               Conread position:
               25-292
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 13
               

               Conread position:
               30-291
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               31-273
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 14
               

               Conread position:
               31-298
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               48, 7
               

               Conread position:
               32-186
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               32-186
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-274
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               30, 44
               

               Conread position:
               32-279
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               37, 22
               

               Conread position:
               32-280
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-280
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 13
               

               Conread position:
               32-280
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               35, 49
               

               Conread position:
               32-289
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 6
               

               Conread position:
               32-290
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               46, 96
               

               Conread position:
               32-290
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 243
               

               Conread position:
               32-290
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 167
               

               Conread position:
               32-291
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               34, 44
               

               Conread position:
               32-291
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 38
               

               Conread position:
               32-291
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-291
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-291
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-291
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 239
               

               Conread position:
               32-291
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-291
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               48, 163
               

               Conread position:
               32-291
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               48, 93
               

               Conread position:
               32-292
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               44, 113
               

               Conread position:
               32-292
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 218
               

               Conread position:
               32-292
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 72
               

               Conread position:
               32-293
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 16
               

               Conread position:
               32-295
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 50
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 256
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 120
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 167
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 109
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               48, 12
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 62
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               202
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               48, 16
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 91
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               207
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               48, 129
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 22
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 170
               

               Conread position:
               32-298
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 168
               

               Conread position:
               32-299
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 232
               

               Conread position:
               33-240
               

               Cow position:
               
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               47, 62
               

               Conread position:
               33-247
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               44, 195
               

               Conread position:
               33-285
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               33-298
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 203
               

               Conread position:
               33-298
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               34-298
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 161
               

               Conread position:
               35-202
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               86, 44
               

               Conread position:
               35-231
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               44, 98
               

               Conread position:
               35-290
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 194
               

               Conread position:
               35-291
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 16
               

               Conread position:
               35-291
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               19, 229
               

               Conread position:
               35-298
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               38-200
               

               Cow position:
               
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               41, 72
               

               Conread position:
               38-298
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               42, 7
               

               Conread position:
               44-293
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 233
               

               Conread position:
               45-292
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               34, 80
               

               Conread position:
               45-298
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               35, 235
               

               Conread position:
               47-239
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               29, 46
               

               Conread position:
               49-285
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               5, 111
               

               Conread position:
               52-298
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               27, 7
               

               Conread position:
               52-298
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               27, 138
               

               Conread position:
               52-298
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               27, 178
               

               Conread position:
               53-280
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               178
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               53-285
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               26, 72
               

               Conread position:
               53-288
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               53-293
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               26, 59
               

               Conread position:
               53-298
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               189
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               27, 152
               

               Conread position:
               53-298
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               24, 35
               

               Conread position:
               53-298
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               54-291
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 12
               

               Conread position:
               55-298
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               56-289
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               178
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               43, 35
               

               Conread position:
               59-274
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               21, 38
               

               Conread position:
               59-298
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               62, 18
               

               Conread position:
               59-299
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               60-298
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               9, 28
               

               Conread position:
               62-291
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               70-294
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 13
               

               Conread position:
               71-291
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               50, 74
               

               Conread position:
               75-298
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 138
               

               Conread position:
               96-298
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               160
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               116-291
               

               Cow position:
               
               

               Alignm length:
               179
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               5, 21
               

               Conread position:
               124-293
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               124-293
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               129-293
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               132-290
               

               Cow position:
               
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               74, 135
               

               Conread position:
               132-298
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               132-298
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               137-298
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               148-298
               

               Cow position:
               
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               157-290
               

               Cow position:
               
               

               Alignm length:
               135
               

               Alignm identity:
               101
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               48, 42
               
Show alignments to all cow chromosomes.