Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 13-173
Cow position:
Alignm length: 166
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 19-280
Cow position:
Alignm length: 272
Alignm identity: 187
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 59, 25

Conread position: 24-289
Cow position:
Alignm length: 273
Alignm identity: 189
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 139

Conread position: 26-298
Cow position:
Alignm length: 281
Alignm identity: 202
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 24, 0

Conread position: 28-293
Cow position:
Alignm length: 274
Alignm identity: 181
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 175

Conread position: 29-257
Cow position:
Alignm length: 238
Alignm identity: 182
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 51, 162

Conread position: 30-298
Cow position:
Alignm length: 275
Alignm identity: 187
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 49, 38

Conread position: 30-298
Cow position:
Alignm length: 277
Alignm identity: 194
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 50, 121

Conread position: 31-291
Cow position:
Alignm length: 268
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 31-291
Cow position:
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 242

Conread position: 31-291
Cow position:
Alignm length: 263
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 51

Conread position: 31-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 7

Conread position: 31-298
Cow position:
Alignm length: 274
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 31-298
Cow position:
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 32-173
Cow position:
Alignm length: 147
Alignm identity: 117
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 48, 19

Conread position: 32-201
Cow position:
Alignm length: 175
Alignm identity: 142
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 0

Conread position: 32-251
Cow position:
Alignm length: 223
Alignm identity: 174
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 47, 182

Conread position: 32-257
Cow position:
Alignm length: 232
Alignm identity: 178
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 48, 161

Conread position: 32-267
Cow position:
Alignm length: 243
Alignm identity: 172
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 32-274
Cow position:
Alignm length: 248
Alignm identity: 180
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 23, 0

Conread position: 32-274
Cow position:
Alignm length: 249
Alignm identity: 181
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 48, 0

Conread position: 32-276
Cow position:
Alignm length: 248
Alignm identity: 180
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 173, 48

Conread position: 32-286
Cow position:
Alignm length: 260
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 161

Conread position: 32-288
Cow position:
Alignm length: 265
Alignm identity: 173
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 22, 6

Conread position: 32-289
Cow position:
Alignm length: 268
Alignm identity: 197
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 48, 6

Conread position: 32-289
Cow position:
Alignm length: 263
Alignm identity: 184
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 48, 34

Conread position: 32-290
Cow position:
Alignm length: 267
Alignm identity: 197
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 169

Conread position: 32-290
Cow position:
Alignm length: 264
Alignm identity: 197
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 48, 24

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position:
Alignm length: 264
Alignm identity: 191
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 22, 82

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 124

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 188
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 92

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 268
Alignm identity: 195
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 68

Conread position: 32-298
Cow position:
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 204
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 48, 164

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 73

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 99

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 203
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 48, 13

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 232

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 150

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 182
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 12

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 240

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 6

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 278
Alignm identity: 193
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 22, 12

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 277
Alignm identity: 203
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 53

Conread position: 32-298
Cow position:
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 6

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 194
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 277
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 160

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 33-274
Cow position:
Alignm length: 245
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 112

Conread position: 33-279
Cow position:
Alignm length: 253
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 33-290
Cow position:
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 28

Conread position: 33-291
Cow position:
Alignm length: 265
Alignm identity: 185
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 46, 60

Conread position: 35-292
Cow position:
Alignm length: 272
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 37-298
Cow position:
Alignm length: 264
Alignm identity: 192
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 54

Conread position: 38-180
Cow position:
Alignm length: 148
Alignm identity: 118
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 38-240
Cow position:
Alignm length: 210
Alignm identity: 157
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 42, 72

Conread position: 38-247
Cow position:
Alignm length: 211
Alignm identity: 161
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 167, 37

Conread position: 38-276
Cow position:
Alignm length: 244
Alignm identity: 178
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 41, 128

Conread position: 38-291
Cow position:
Alignm length: 260
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-291
Cow position:
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 87

Conread position: 38-298
Cow position:
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position:
Alignm length: 270
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position:
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 56

Conread position: 38-298
Cow position:
Alignm length: 268
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 161

Conread position: 39-217
Cow position:
Alignm length: 185
Alignm identity: 143
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 41, 0

Conread position: 40-290
Cow position:
Alignm length: 257
Alignm identity: 172
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 14, 154

Conread position: 40-294
Cow position:
Alignm length: 260
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 86

Conread position: 45-273
Cow position:
Alignm length: 245
Alignm identity: 181
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 0

Conread position: 45-286
Cow position:
Alignm length: 246
Alignm identity: 190
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 34, 13

Conread position: 45-288
Cow position:
Alignm length: 251
Alignm identity: 187
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 11, 180

Conread position: 45-290
Cow position:
Alignm length: 249
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 216

Conread position: 45-298
Cow position:
Alignm length: 260
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 151

Conread position: 45-301
Cow position:
Alignm length: 265
Alignm identity: 190
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 125

Conread position: 45-368
Cow position:
Alignm length: 337
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 9

Conread position: 46-298
Cow position:
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 58

Conread position: 47-292
Cow position:
Alignm length: 252
Alignm identity: 180
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 34, 100

Conread position: 49-256
Cow position:
Alignm length: 214
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 106

Conread position: 49-298
Cow position:
Alignm length: 253
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 21

Conread position: 53-203
Cow position:
Alignm length: 155
Alignm identity: 125
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 28, 87

Conread position: 53-291
Cow position:
Alignm length: 245
Alignm identity: 185
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 23, 0

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 54-197
Cow position:
Alignm length: 148
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 68

Conread position: 54-285
Cow position:
Alignm length: 236
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 20

Conread position: 54-298
Cow position:
Alignm length: 252
Alignm identity: 172
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 7, 42

Conread position: 57-280
Cow position:
Alignm length: 233
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 198

Conread position: 59-254
Cow position:
Alignm length: 198
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 32

Conread position: 59-269
Cow position:
Alignm length: 215
Alignm identity: 160
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 25, 16

Conread position: 59-273
Cow position:
Alignm length: 221
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 59-279
Cow position:
Alignm length: 227
Alignm identity: 176
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 21, 212

Conread position: 59-298
Cow position:
Alignm length: 246
Alignm identity: 166
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 20, 66

Conread position: 59-298
Cow position:
Alignm length: 249
Alignm identity: 172
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 74

Conread position: 70-298
Cow position:
Alignm length: 231
Alignm identity: 161
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 33

Conread position: 77-298
Cow position:
Alignm length: 224
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 44

Conread position: 78-298
Cow position:
Alignm length: 223
Alignm identity: 169
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 43, 195

Conread position: 79-298
Cow position:
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 127, 36

Conread position: 85-291
Cow position:
Alignm length: 209
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 94-298
Cow position:
Alignm length: 210
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 149

Conread position: 98-298
Cow position:
Alignm length: 204
Alignm identity: 160
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 23, 0

Conread position: 103-298
Cow position:
Alignm length: 198
Alignm identity: 138
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 18, 165

Conread position: 105-291
Cow position:
Alignm length: 191
Alignm identity: 138
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 32

Conread position: 117-274
Cow position:
Alignm length: 159
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 88, 9

Conread position: 120-274
Cow position:
Alignm length: 158
Alignm identity: 123
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 85, 0

Conread position: 120-290
Cow position:
Alignm length: 172
Alignm identity: 137
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 85, 131

Conread position: 132-291
Cow position:
Alignm length: 162
Alignm identity: 129
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 73, 0

Conread position: 134-291
Cow position:
Alignm length: 161
Alignm identity: 132
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 71, 0

Conread position: 142-274
Cow position:
Alignm length: 134
Alignm identity: 107
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 63, 32

Conread position: 145-298
Cow position:
Alignm length: 157
Alignm identity: 123
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 60, 0

Conread position: 154-290
Cow position:
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 126

Conread position: 183-293
Cow position:
Alignm length: 112
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Show alignments to all cow chromosomes.