Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 20-279
Cow position:
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 28-290
Cow position:
Alignm length: 270
Alignm identity: 196
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 52, 17

Conread position: 30-279
Cow position:
Alignm length: 255
Alignm identity: 186
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 50, 112

Conread position: 30-292
Cow position:
Alignm length: 269
Alignm identity: 195
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 45, 85

Conread position: 31-220
Cow position:
Alignm length: 196
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 31-291
Cow position:
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 147

Conread position: 31-291
Cow position:
Alignm length: 264
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 61

Conread position: 31-298
Cow position:
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 14

Conread position: 31-298
Cow position:
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 31-298
Cow position:
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 169

Conread position: 32-196
Cow position:
Alignm length: 173
Alignm identity: 133
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 32-202
Cow position:
Alignm length: 176
Alignm identity: 138
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 48, 0

Conread position: 32-237
Cow position:
Alignm length: 212
Alignm identity: 164
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 48, 193

Conread position: 32-241
Cow position:
Alignm length: 214
Alignm identity: 147
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 47, 6

Conread position: 32-248
Cow position:
Alignm length: 223
Alignm identity: 159
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 36, 96

Conread position: 32-267
Cow position:
Alignm length: 242
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-273
Cow position:
Alignm length: 247
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 32-274
Cow position:
Alignm length: 248
Alignm identity: 183
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 48, 93

Conread position: 32-285
Cow position:
Alignm length: 260
Alignm identity: 188
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 30, 12

Conread position: 32-285
Cow position:
Alignm length: 261
Alignm identity: 191
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 48, 13

Conread position: 32-287
Cow position:
Alignm length: 263
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 165

Conread position: 32-289
Cow position:
Alignm length: 260
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 47

Conread position: 32-290
Cow position:
Alignm length: 264
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-290
Cow position:
Alignm length: 264
Alignm identity: 189
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 48, 30

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 157

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 196
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 44, 153

Conread position: 32-291
Cow position:
Alignm length: 261
Alignm identity: 184
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 174, 50

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 198
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 48, 30

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 240

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 197
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 48, 129

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 152

Conread position: 32-293
Cow position:
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 96

Conread position: 32-294
Cow position:
Alignm length: 266
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 126

Conread position: 32-297
Cow position:
Alignm length: 275
Alignm identity: 197
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 16, 6

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 166

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 241

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 253

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 13

Conread position: 32-298
Cow position:
Alignm length: 276
Alignm identity: 203
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 6

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 168

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 127

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 38

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 200
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 10, 208

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 197
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 44, 147

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 200
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 48, 35

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 73

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 193
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 242

Conread position: 32-298
Cow position:
Alignm length: 269
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-307
Cow position:
Alignm length: 282
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-313
Cow position:
Alignm length: 284
Alignm identity: 198
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 236, 12

Conread position: 32-313
Cow position:
Alignm length: 289
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 33-298
Cow position:
Alignm length: 273
Alignm identity: 185
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 21, 190

Conread position: 33-298
Cow position:
Alignm length: 273
Alignm identity: 199
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 47, 0

Conread position: 34-298
Cow position:
Alignm length: 271
Alignm identity: 194
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 42, 189

Conread position: 35-240
Cow position:
Alignm length: 212
Alignm identity: 169
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 46, 159

Conread position: 35-290
Cow position:
Alignm length: 262
Alignm identity: 181
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 44, 116

Conread position: 35-290
Cow position:
Alignm length: 262
Alignm identity: 180
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 44, 116

Conread position: 35-298
Cow position:
Alignm length: 268
Alignm identity: 193
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 45, 10

Conread position: 35-298
Cow position:
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 35-298
Cow position:
Alignm length: 270
Alignm identity: 181
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 44, 178

Conread position: 38-221
Cow position:
Alignm length: 196
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 77

Conread position: 38-249
Cow position:
Alignm length: 217
Alignm identity: 156
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 42, 81

Conread position: 38-285
Cow position:
Alignm length: 251
Alignm identity: 184
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 42, 84

Conread position: 38-289
Cow position:
Alignm length: 255
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 59

Conread position: 38-291
Cow position:
Alignm length: 261
Alignm identity: 194
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 42, 32

Conread position: 38-298
Cow position:
Alignm length: 268
Alignm identity: 181
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 34, 0

Conread position: 38-298
Cow position:
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 118

Conread position: 38-298
Cow position:
Alignm length: 270
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 235

Conread position: 39-291
Cow position:
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 39-298
Cow position:
Alignm length: 266
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 40-298
Cow position:
Alignm length: 262
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 39, 0

Conread position: 40-298
Cow position:
Alignm length: 265
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 86

Conread position: 45-185
Cow position:
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 79

Conread position: 45-290
Cow position:
Alignm length: 252
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 45-298
Cow position:
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 105

Conread position: 45-298
Cow position:
Alignm length: 264
Alignm identity: 188
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 34, 68

Conread position: 45-298
Cow position:
Alignm length: 261
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 115

Conread position: 46-297
Cow position:
Alignm length: 255
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 79

Conread position: 48-291
Cow position:
Alignm length: 246
Alignm identity: 158
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 52-290
Cow position:
Alignm length: 241
Alignm identity: 176
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 69, 23

Conread position: 52-291
Cow position:
Alignm length: 242
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 21

Conread position: 53-283
Cow position:
Alignm length: 237
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 53-291
Cow position:
Alignm length: 245
Alignm identity: 186
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 221

Conread position: 53-291
Cow position:
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 182
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 27, 13

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 217

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 54-291
Cow position:
Alignm length: 244
Alignm identity: 183
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 59

Conread position: 55-293
Cow position:
Alignm length: 252
Alignm identity: 171
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 173

Conread position: 55-298
Cow position:
Alignm length: 251
Alignm identity: 185
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 25, 47

Conread position: 55-298
Cow position:
Alignm length: 251
Alignm identity: 187
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 7, 103

Conread position: 56-201
Cow position:
Alignm length: 150
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 24, 69

Conread position: 57-228
Cow position:
Alignm length: 182
Alignm identity: 143
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 23, 0

Conread position: 57-291
Cow position:
Alignm length: 239
Alignm identity: 179
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 23, 35

Conread position: 57-298
Cow position:
Alignm length: 248
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 59-291
Cow position:
Alignm length: 238
Alignm identity: 167
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 21, 196

Conread position: 59-298
Cow position:
Alignm length: 243
Alignm identity: 159
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 194

Conread position: 59-299
Cow position:
Alignm length: 250
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 103

Conread position: 62-290
Cow position:
Alignm length: 235
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 57

Conread position: 62-292
Cow position:
Alignm length: 238
Alignm identity: 163
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 12

Conread position: 63-293
Cow position:
Alignm length: 237
Alignm identity: 170
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 14, 48

Conread position: 80-255
Cow position:
Alignm length: 180
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 84-298
Cow position:
Alignm length: 215
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 93-292
Cow position:
Alignm length: 202
Alignm identity: 158
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 62

Conread position: 98-298
Cow position:
Alignm length: 203
Alignm identity: 158
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 23, 66

Conread position: 98-298
Cow position:
Alignm length: 203
Alignm identity: 147
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 23, 0

Conread position: 99-298
Cow position:
Alignm length: 201
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 91

Conread position: 115-298
Cow position:
Alignm length: 187
Alignm identity: 139
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 6, 83

Conread position: 132-274
Cow position:
Alignm length: 144
Alignm identity: 116
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 73, 0

Conread position: 132-298
Cow position:
Alignm length: 168
Alignm identity: 133
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 74, 0

Conread position: 133-298
Cow position:
Alignm length: 168
Alignm identity: 128
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 73, 33

Conread position: 144-298
Cow position:
Alignm length: 158
Alignm identity: 125
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 23, 15

Conread position: 152-291
Cow position:
Alignm length: 141
Alignm identity: 113
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 54, 0

Conread position: 163-290
Cow position:
Alignm length: 129
Alignm identity: 102
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 166-293
Cow position:
Alignm length: 129
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 40, 0

Show alignments to all cow chromosomes.