Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 22-299
Cow position:
Alignm length: 281
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 25-240
Cow position:
Alignm length: 217
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 180, 41

Conread position: 30-293
Cow position:
Alignm length: 267
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 30-294
Cow position:
Alignm length: 271
Alignm identity: 203
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 46, 8

Conread position: 30-298
Cow position:
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 31-231
Cow position:
Alignm length: 207
Alignm identity: 159
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 45, 20

Conread position: 31-290
Cow position:
Alignm length: 263
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 47

Conread position: 31-291
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 10, 0

Conread position: 31-296
Cow position:
Alignm length: 276
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 47

Conread position: 31-298
Cow position:
Alignm length: 274
Alignm identity: 184
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 13, 81

Conread position: 31-298
Cow position:
Alignm length: 274
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 32-150
Cow position:
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 32-164
Cow position:
Alignm length: 136
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 32-201
Cow position:
Alignm length: 175
Alignm identity: 137
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 32-244
Cow position:
Alignm length: 217
Alignm identity: 151
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 87

Conread position: 32-274
Cow position:
Alignm length: 249
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-276
Cow position:
Alignm length: 250
Alignm identity: 191
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 48, 19

Conread position: 32-279
Cow position:
Alignm length: 255
Alignm identity: 192
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 48, 12

Conread position: 32-289
Cow position:
Alignm length: 259
Alignm identity: 190
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 173, 48

Conread position: 32-290
Cow position:
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 53

Conread position: 32-290
Cow position:
Alignm length: 263
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 49

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 237

Conread position: 32-290
Cow position:
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 242

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 135

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 98

Conread position: 32-291
Cow position:
Alignm length: 269
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 160

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 127

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 81

Conread position: 32-292
Cow position:
Alignm length: 273
Alignm identity: 186
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 13

Conread position: 32-292
Cow position:
Alignm length: 266
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 62

Conread position: 32-293
Cow position:
Alignm length: 268
Alignm identity: 191
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 21, 12

Conread position: 32-293
Cow position:
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 32-293
Cow position:
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 89

Conread position: 32-295
Cow position:
Alignm length: 269
Alignm identity: 200
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 165

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 155

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 283
Alignm identity: 206
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 48, 16

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 128

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 220

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 200
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 12

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 200
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 48, 63

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 47, 125

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 80

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 216

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 283
Alignm identity: 195
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 19

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 275
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 123

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 193
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 78

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 242

Conread position: 32-298
Cow position:
Alignm length: 276
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 121

Conread position: 32-299
Cow position:
Alignm length: 274
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 33-292
Cow position:
Alignm length: 270
Alignm identity: 190
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 37, 156

Conread position: 34-257
Cow position:
Alignm length: 229
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 82, 46

Conread position: 34-293
Cow position:
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 34-298
Cow position:
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 35-290
Cow position:
Alignm length: 265
Alignm identity: 189
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 34, 159

Conread position: 35-291
Cow position:
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 35-298
Cow position:
Alignm length: 270
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 37-240
Cow position:
Alignm length: 206
Alignm identity: 147
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 87, 38

Conread position: 37-293
Cow position:
Alignm length: 262
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 38-292
Cow position:
Alignm length: 260
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 22

Conread position: 38-298
Cow position:
Alignm length: 264
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 30

Conread position: 38-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 241

Conread position: 39-169
Cow position:
Alignm length: 136
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 39-298
Cow position:
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 27

Conread position: 39-298
Cow position:
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 27

Conread position: 39-298
Cow position:
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 250

Conread position: 40-231
Cow position:
Alignm length: 199
Alignm identity: 147
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 10, 0

Conread position: 41-232
Cow position:
Alignm length: 197
Alignm identity: 143
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 38, 72

Conread position: 44-290
Cow position:
Alignm length: 255
Alignm identity: 173
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 6, 149

Conread position: 45-274
Cow position:
Alignm length: 236
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 45-298
Cow position:
Alignm length: 260
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 45-298
Cow position:
Alignm length: 261
Alignm identity: 198
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 9, 216

Conread position: 49-274
Cow position:
Alignm length: 232
Alignm identity: 174
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 27, 85

Conread position: 52-293
Cow position:
Alignm length: 248
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 52-295
Cow position:
Alignm length: 248
Alignm identity: 179
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 31, 53

Conread position: 53-289
Cow position:
Alignm length: 243
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 53-289
Cow position:
Alignm length: 244
Alignm identity: 162
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 88

Conread position: 53-289
Cow position:
Alignm length: 246
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 53-290
Cow position:
Alignm length: 241
Alignm identity: 163
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 43

Conread position: 53-291
Cow position:
Alignm length: 242
Alignm identity: 164
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 43

Conread position: 53-293
Cow position:
Alignm length: 249
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 22

Conread position: 53-293
Cow position:
Alignm length: 246
Alignm identity: 182
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 27, 59

Conread position: 53-298
Cow position:
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 72

Conread position: 53-298
Cow position:
Alignm length: 252
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 54-261
Cow position:
Alignm length: 214
Alignm identity: 165
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 26, 203

Conread position: 55-298
Cow position:
Alignm length: 250
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 55-298
Cow position:
Alignm length: 249
Alignm identity: 184
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 25, 147

Conread position: 59-257
Cow position:
Alignm length: 205
Alignm identity: 153
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 20, 55

Conread position: 61-174
Cow position:
Alignm length: 115
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 81

Conread position: 62-298
Cow position:
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 152

Conread position: 69-292
Cow position:
Alignm length: 226
Alignm identity: 158
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 52, 34

Conread position: 76-236
Cow position:
Alignm length: 162
Alignm identity: 123
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 129, 45

Conread position: 87-298
Cow position:
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 49

Conread position: 94-248
Cow position:
Alignm length: 156
Alignm identity: 125
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 111, 0

Conread position: 97-293
Cow position:
Alignm length: 198
Alignm identity: 135
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 107, 29

Conread position: 99-290
Cow position:
Alignm length: 195
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 126

Conread position: 99-291
Cow position:
Alignm length: 196
Alignm identity: 144
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 23, 98

Conread position: 106-290
Cow position:
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 87, 15

Conread position: 120-243
Cow position:
Alignm length: 126
Alignm identity: 108
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 63, 0

Conread position: 126-298
Cow position:
Alignm length: 177
Alignm identity: 147
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 15, 0

Conread position: 132-291
Cow position:
Alignm length: 161
Alignm identity: 131
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 74, 0

Conread position: 132-293
Cow position:
Alignm length: 163
Alignm identity: 130
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 73, 0

Conread position: 132-298
Cow position:
Alignm length: 168
Alignm identity: 130
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 74, 0

Conread position: 133-298
Cow position:
Alignm length: 168
Alignm identity: 134
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 15, 45

Conread position: 133-298
Cow position:
Alignm length: 170
Alignm identity: 131
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 5, 0

Conread position: 136-293
Cow position:
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 144-290
Cow position:
Alignm length: 148
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 152-286
Cow position:
Alignm length: 137
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 118

Conread position: 162-291
Cow position:
Alignm length: 131
Alignm identity: 105
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 166-285
Cow position:
Alignm length: 121
Alignm identity: 102
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 166-294
Cow position:
Alignm length: 130
Alignm identity: 101
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 43, 0

Show alignments to all cow chromosomes.