Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 8-168
Cow position:
Alignm length: 167
Alignm identity: 124
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 25, 44

Conread position: 8-289
Cow position:
Alignm length: 289
Alignm identity: 210
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 25, 37

Conread position: 13-292
Cow position:
Alignm length: 285
Alignm identity: 191
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 73, 31

Conread position: 19-298
Cow position:
Alignm length: 287
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 89

Conread position: 19-298
Cow position:
Alignm length: 286
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 23-227
Cow position:
Alignm length: 210
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 26

Conread position: 24-264
Cow position:
Alignm length: 244
Alignm identity: 143
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 55, 0

Conread position: 24-299
Cow position:
Alignm length: 282
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 25-292
Cow position:
Alignm length: 273
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 26

Conread position: 25-298
Cow position:
Alignm length: 280
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 26

Conread position: 25-298
Cow position:
Alignm length: 279
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 26-289
Cow position:
Alignm length: 270
Alignm identity: 196
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 99

Conread position: 26-298
Cow position:
Alignm length: 280
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 9

Conread position: 30-298
Cow position:
Alignm length: 275
Alignm identity: 187
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 218

Conread position: 30-298
Cow position:
Alignm length: 275
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 31-276
Cow position:
Alignm length: 252
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 31-290
Cow position:
Alignm length: 264
Alignm identity: 174
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 23

Conread position: 31-290
Cow position:
Alignm length: 262
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 7

Conread position: 31-293
Cow position:
Alignm length: 265
Alignm identity: 191
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 90, 7

Conread position: 31-298
Cow position:
Alignm length: 271
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 31-298
Cow position:
Alignm length: 281
Alignm identity: 194
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 147

Conread position: 32-169
Cow position:
Alignm length: 143
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 32-172
Cow position:
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 32-178
Cow position:
Alignm length: 152
Alignm identity: 123
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 32-231
Cow position:
Alignm length: 203
Alignm identity: 151
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 48, 0

Conread position: 32-231
Cow position:
Alignm length: 206
Alignm identity: 155
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 43, 125

Conread position: 32-262
Cow position:
Alignm length: 237
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-267
Cow position:
Alignm length: 242
Alignm identity: 172
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 43, 75

Conread position: 32-267
Cow position:
Alignm length: 242
Alignm identity: 180
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 48, 0

Conread position: 32-273
Cow position:
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 32-274
Cow position:
Alignm length: 250
Alignm identity: 187
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 6

Conread position: 32-275
Cow position:
Alignm length: 251
Alignm identity: 183
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 13, 0

Conread position: 32-281
Cow position:
Alignm length: 260
Alignm identity: 184
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 47, 159

Conread position: 32-283
Cow position:
Alignm length: 255
Alignm identity: 188
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 90, 44

Conread position: 32-289
Cow position:
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 272
Alignm identity: 195
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 89, 47

Conread position: 32-291
Cow position:
Alignm length: 268
Alignm identity: 199
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 48, 208

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 164

Conread position: 32-291
Cow position:
Alignm length: 267
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 115

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 284
Alignm identity: 199
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 48, 16

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-292
Cow position:
Alignm length: 269
Alignm identity: 197
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 47, 93

Conread position: 32-293
Cow position:
Alignm length: 268
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 242

Conread position: 32-293
Cow position:
Alignm length: 267
Alignm identity: 184
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 30, 43

Conread position: 32-293
Cow position:
Alignm length: 268
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 94

Conread position: 32-293
Cow position:
Alignm length: 269
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 218

Conread position: 32-293
Cow position:
Alignm length: 263
Alignm identity: 184
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 173, 12

Conread position: 32-293
Cow position:
Alignm length: 267
Alignm identity: 195
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 48, 202

Conread position: 32-293
Cow position:
Alignm length: 268
Alignm identity: 195
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 32-293
Cow position:
Alignm length: 271
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 99

Conread position: 32-294
Cow position:
Alignm length: 269
Alignm identity: 197
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 48, 19

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 78

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 92

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 198
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 48, 147

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 242

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 178
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 89, 79

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 197
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 26, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 195
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 48, 16

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 184
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 13, 94

Conread position: 32-298
Cow position:
Alignm length: 286
Alignm identity: 202
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 187
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 47, 6

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 278
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 207

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 207

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 130

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 147

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 106

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 78

Conread position: 34-255
Cow position:
Alignm length: 227
Alignm identity: 157
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 44, 91

Conread position: 34-290
Cow position:
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 34-292
Cow position:
Alignm length: 262
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 216

Conread position: 34-298
Cow position:
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 34-298
Cow position:
Alignm length: 270
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 174

Conread position: 34-298
Cow position:
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 34-298
Cow position:
Alignm length: 272
Alignm identity: 186
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 17, 0

Conread position: 35-192
Cow position:
Alignm length: 163
Alignm identity: 127
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 35-275
Cow position:
Alignm length: 247
Alignm identity: 185
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 45, 121

Conread position: 35-292
Cow position:
Alignm length: 264
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 35-292
Cow position:
Alignm length: 261
Alignm identity: 194
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 45, 57

Conread position: 35-298
Cow position:
Alignm length: 270
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 234

Conread position: 38-236
Cow position:
Alignm length: 202
Alignm identity: 148
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 42, 0

Conread position: 38-248
Cow position:
Alignm length: 215
Alignm identity: 166
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 81, 45

Conread position: 38-276
Cow position:
Alignm length: 243
Alignm identity: 168
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 30

Conread position: 38-290
Cow position:
Alignm length: 254
Alignm identity: 175
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 172, 73

Conread position: 38-291
Cow position:
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position:
Alignm length: 268
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 38-298
Cow position:
Alignm length: 266
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 38-299
Cow position:
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 41-285
Cow position:
Alignm length: 253
Alignm identity: 192
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 68, 39

Conread position: 42-299
Cow position:
Alignm length: 261
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 229

Conread position: 45-226
Cow position:
Alignm length: 186
Alignm identity: 147
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 5, 31

Conread position: 45-298
Cow position:
Alignm length: 260
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 9

Conread position: 45-298
Cow position:
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 21

Conread position: 45-298
Cow position:
Alignm length: 261
Alignm identity: 192
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 11, 114

Conread position: 47-220
Cow position:
Alignm length: 180
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 32, 68

Conread position: 52-276
Cow position:
Alignm length: 228
Alignm identity: 159
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 59, 23

Conread position: 53-239
Cow position:
Alignm length: 196
Alignm identity: 148
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 23, 186

Conread position: 53-298
Cow position:
Alignm length: 254
Alignm identity: 192
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 27, 141

Conread position: 54-290
Cow position:
Alignm length: 239
Alignm identity: 164
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 152, 26

Conread position: 54-290
Cow position:
Alignm length: 243
Alignm identity: 169
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 0

Conread position: 54-290
Cow position:
Alignm length: 257
Alignm identity: 193
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 72

Conread position: 54-298
Cow position:
Alignm length: 247
Alignm identity: 176
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 67, 25

Conread position: 55-274
Cow position:
Alignm length: 226
Alignm identity: 167
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 24, 60

Conread position: 55-291
Cow position:
Alignm length: 254
Alignm identity: 181
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 0

Conread position: 55-298
Cow position:
Alignm length: 247
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 13

Conread position: 58-293
Cow position:
Alignm length: 240
Alignm identity: 172
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 50, 110

Conread position: 59-288
Cow position:
Alignm length: 232
Alignm identity: 164
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 38, 23

Conread position: 61-292
Cow position:
Alignm length: 237
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 110

Conread position: 62-293
Cow position:
Alignm length: 237
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 77

Conread position: 62-307
Cow position:
Alignm length: 251
Alignm identity: 175
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 7

Conread position: 92-298
Cow position:
Alignm length: 212
Alignm identity: 167
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 29, 49

Conread position: 97-298
Cow position:
Alignm length: 204
Alignm identity: 154
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 24, 0

Conread position: 103-302
Cow position:
Alignm length: 202
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 103, 17

Conread position: 105-298
Cow position:
Alignm length: 196
Alignm identity: 148
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 109-260
Cow position:
Alignm length: 154
Alignm identity: 123
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 12, 0

Conread position: 109-298
Cow position:
Alignm length: 192
Alignm identity: 156
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 12, 108

Conread position: 124-289
Cow position:
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 81, 23

Conread position: 127-298
Cow position:
Alignm length: 173
Alignm identity: 138
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 79, 0

Conread position: 127-298
Cow position:
Alignm length: 173
Alignm identity: 137
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 79, 68

Conread position: 128-291
Cow position:
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 78, 32

Conread position: 132-298
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 30

Conread position: 137-291
Cow position:
Alignm length: 156
Alignm identity: 119
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 68, 0

Conread position: 143-279
Cow position:
Alignm length: 138
Alignm identity: 108
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 41

Conread position: 152-274
Cow position:
Alignm length: 127
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 156-298
Cow position:
Alignm length: 145
Alignm identity: 116
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 171-291
Cow position:
Alignm length: 122
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 0

Show alignments to all cow chromosomes.