Cow genome map

Conread name: Ss1.1-rsag040_h9.5

Conread position: 20-298
Cow position:
Alignm length: 284
Alignm identity: 199
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 10, 23

Conread position: 30-290
Cow position:
Alignm length: 269
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 18, 76

Conread position: 30-298
Cow position:
Alignm length: 274
Alignm identity: 198
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 50, 95

Conread position: 31-274
Cow position:
Alignm length: 249
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 118

Conread position: 31-298
Cow position:
Alignm length: 274
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 228

Conread position: 32-168
Cow position:
Alignm length: 142
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 32-228
Cow position:
Alignm length: 204
Alignm identity: 157
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 48, 168

Conread position: 32-240
Cow position:
Alignm length: 216
Alignm identity: 159
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 48, 12

Conread position: 32-256
Cow position:
Alignm length: 228
Alignm identity: 172
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 102

Conread position: 32-257
Cow position:
Alignm length: 229
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 44

Conread position: 32-260
Cow position:
Alignm length: 236
Alignm identity: 169
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 12

Conread position: 32-267
Cow position:
Alignm length: 244
Alignm identity: 166
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 27

Conread position: 32-267
Cow position:
Alignm length: 241
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 13

Conread position: 32-274
Cow position:
Alignm length: 249
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 16

Conread position: 32-276
Cow position:
Alignm length: 251
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 32-280
Cow position:
Alignm length: 254
Alignm identity: 177
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 39, 6

Conread position: 32-281
Cow position:
Alignm length: 256
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 32-285
Cow position:
Alignm length: 261
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-290
Cow position:
Alignm length: 265
Alignm identity: 192
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 47, 85

Conread position: 32-290
Cow position:
Alignm length: 264
Alignm identity: 182
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 75

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 192
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 48, 93

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 263
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 230

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-291
Cow position:
Alignm length: 266
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 108

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 176

Conread position: 32-291
Cow position:
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 32-293
Cow position:
Alignm length: 268
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 191

Conread position: 32-293
Cow position:
Alignm length: 274
Alignm identity: 198
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 48, 30

Conread position: 32-295
Cow position:
Alignm length: 281
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 47, 253

Conread position: 32-298
Cow position:
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 62

Conread position: 32-298
Cow position:
Alignm length: 271
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 66

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 164

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 16

Conread position: 32-298
Cow position:
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 120

Conread position: 32-298
Cow position:
Alignm length: 269
Alignm identity: 195
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 161, 48

Conread position: 32-298
Cow position:
Alignm length: 275
Alignm identity: 200
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 50, 0

Conread position: 32-298
Cow position:
Alignm length: 281
Alignm identity: 202
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 48, 12

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 237

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 142

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 81

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 33

Conread position: 32-298
Cow position:
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 12

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 32-298
Cow position:
Alignm length: 270
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 11

Conread position: 32-299
Cow position:
Alignm length: 277
Alignm identity: 199
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 18, 0

Conread position: 33-274
Cow position:
Alignm length: 247
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 47, 126

Conread position: 33-274
Cow position:
Alignm length: 248
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 33-291
Cow position:
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 73

Conread position: 34-260
Cow position:
Alignm length: 235
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 39, 61

Conread position: 34-274
Cow position:
Alignm length: 247
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 34-293
Cow position:
Alignm length: 261
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 46

Conread position: 34-298
Cow position:
Alignm length: 271
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 45, 223

Conread position: 35-277
Cow position:
Alignm length: 247
Alignm identity: 172
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 19, 173

Conread position: 35-289
Cow position:
Alignm length: 257
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 40

Conread position: 35-298
Cow position:
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 46

Conread position: 35-298
Cow position:
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 75

Conread position: 35-298
Cow position:
Alignm length: 269
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 56

Conread position: 35-299
Cow position:
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 38-281
Cow position:
Alignm length: 251
Alignm identity: 170
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 237

Conread position: 38-287
Cow position:
Alignm length: 259
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 148

Conread position: 38-288
Cow position:
Alignm length: 259
Alignm identity: 186
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 37, 0

Conread position: 38-298
Cow position:
Alignm length: 268
Alignm identity: 191
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 42, 30

Conread position: 39-298
Cow position:
Alignm length: 267
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 157

Conread position: 44-299
Cow position:
Alignm length: 260
Alignm identity: 191
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 36, 110

Conread position: 45-249
Cow position:
Alignm length: 214
Alignm identity: 169
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 5, 120

Conread position: 45-289
Cow position:
Alignm length: 252
Alignm identity: 187
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 11, 150

Conread position: 47-293
Cow position:
Alignm length: 255
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 32, 194

Conread position: 47-298
Cow position:
Alignm length: 261
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 53-280
Cow position:
Alignm length: 233
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 27, 72

Conread position: 53-299
Cow position:
Alignm length: 260
Alignm identity: 188
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 27, 177

Conread position: 54-171
Cow position:
Alignm length: 122
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 54-248
Cow position:
Alignm length: 203
Alignm identity: 154
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 23, 71

Conread position: 54-298
Cow position:
Alignm length: 250
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 71

Conread position: 58-293
Cow position:
Alignm length: 242
Alignm identity: 180
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 29, 0

Conread position: 59-272
Cow position:
Alignm length: 216
Alignm identity: 157
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 20, 63

Conread position: 59-274
Cow position:
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 56

Conread position: 59-289
Cow position:
Alignm length: 238
Alignm identity: 164
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 59-298
Cow position:
Alignm length: 246
Alignm identity: 183
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 21, 0

Conread position: 60-290
Cow position:
Alignm length: 237
Alignm identity: 167
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 19, 212

Conread position: 62-298
Cow position:
Alignm length: 239
Alignm identity: 168
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 75

Conread position: 70-298
Cow position:
Alignm length: 231
Alignm identity: 167
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 13

Conread position: 78-302
Cow position:
Alignm length: 227
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 43, 218

Conread position: 80-287
Cow position:
Alignm length: 210
Alignm identity: 151
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 41, 67

Conread position: 81-279
Cow position:
Alignm length: 201
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 187

Conread position: 107-274
Cow position:
Alignm length: 176
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 108-293
Cow position:
Alignm length: 188
Alignm identity: 135
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 114-298
Cow position:
Alignm length: 187
Alignm identity: 146
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 7, 0

Conread position: 123-273
Cow position:
Alignm length: 152
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 10

Conread position: 123-298
Cow position:
Alignm length: 177
Alignm identity: 138
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 82, 0

Conread position: 129-293
Cow position:
Alignm length: 167
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 6

Conread position: 132-298
Cow position:
Alignm length: 170
Alignm identity: 132
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 73, 83

Conread position: 133-298
Cow position:
Alignm length: 166
Alignm identity: 136
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 72, 0

Conread position: 133-298
Cow position:
Alignm length: 168
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 134-293
Cow position:
Alignm length: 161
Alignm identity: 124
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 72, 149

Conread position: 134-298
Cow position:
Alignm length: 167
Alignm identity: 134
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 8, 0

Conread position: 142-298
Cow position:
Alignm length: 165
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 21, 117

Conread position: 145-298
Cow position:
Alignm length: 155
Alignm identity: 121
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 162-291
Cow position:
Alignm length: 131
Alignm identity: 99
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 195-298
Cow position:
Alignm length: 106
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 196-298
Cow position:
Alignm length: 105
Alignm identity: 87
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 205-293
Cow position:
Alignm length: 89
Alignm identity: 76
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.