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Cow genome map

           
Conread name:
           
Ss1.1-rski0108_p17.5
        

               
Conread position:
               
96-544
               

               
Cow position:
               
chr9:23541676-23541240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
64, 51
               

               
Conread position:
               
118-559
               

               
Cow position:
               
chr9:28452417-28451974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
169, 22
               

               
Conread position:
               
140-346
               

               
Cow position:
               
chr9:53120773-53120967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
145-426
               

               
Cow position:
               
chr9:39135853-39135574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
7, 83
               

               
Conread position:
               
146-375
               

               
Cow position:
               
chr9:18817935-18817707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
146-499
               

               
Cow position:
               
chr9:33411794-33411453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
146-557
               

               
Cow position:
               
chr9:22434153-22433750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
147-548
               

               
Cow position:
               
chr9:41416102-41416527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
148-317
               

               
Cow position:
               
chr9:38799941-38799771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
150-335
               

               
Cow position:
               
chr9:55577486-55577671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
21, 136
               

               
Conread position:
               
150-369
               

               
Cow position:
               
chr9:48046315-48046536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
150-463
               

               
Cow position:
               
chr9:34024477-34024789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
150-539
               

               
Cow position:
               
chr9:19034133-19034504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
9, 13
               

               
Conread position:
               
151-387
               

               
Cow position:
               
chr9:3198396-3198172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
151-387
               

               
Cow position:
               
chr9:44918501-44918266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
21, 135
               

               
Conread position:
               
151-517
               

               
Cow position:
               
chr9:48730207-48730569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
152-355
               

               
Cow position:
               
chr9:52153095-52153297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
152-365
               

               
Cow position:
               
chr9:61847338-61847131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 122
               

               
Conread position:
               
152-366
               

               
Cow position:
               
chr9:54086234-54086021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
152-376
               

               
Cow position:
               
chr9:11161116-11161333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
152-382
               

               
Cow position:
               
chr9:9091333-9091095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
152-402
               

               
Cow position:
               
chr9:41470319-41470068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
152-423
               

               
Cow position:
               
chr9:34484372-34484646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
152-427
               

               
Cow position:
               
chr9:55495218-55494931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
152-559
               

               
Cow position:
               
chr9:46317003-46316602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
153-347
               

               
Cow position:
               
chr9:45170607-45170406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
153-369
               

               
Cow position:
               
chr9:26683640-26683433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
153-382
               

               
Cow position:
               
chr9:48901053-48900826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
132, 22
               

               
Conread position:
               
154-370
               

               
Cow position:
               
chr9:33398894-33399085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
154-376
               

               
Cow position:
               
chr9:33101323-33101111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
154-382
               

               
Cow position:
               
chr9:53632146-53631914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
154-559
               

               
Cow position:
               
chr9:20090844-20091225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 17
               

               
Conread position:
               
154-559
               

               
Cow position:
               
chr9:47500416-47500023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
155-544
               

               
Cow position:
               
chr9:20416731-20416346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
37, 8
               

               
Conread position:
               
157-386
               

               
Cow position:
               
chr9:18003393-18003178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
157-432
               

               
Cow position:
               
chr9:45749214-45749501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
157-507
               

               
Cow position:
               
chr9:50310980-50310643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
158-300
               

               
Cow position:
               
chr9:37016507-37016367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
158-361
               

               
Cow position:
               
chr9:60741400-60741195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
51, 162
               

               
Conread position:
               
158-369
               

               
Cow position:
               
chr9:37127434-37127648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
158-371
               

               
Cow position:
               
chr9:27308088-27307882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
147, 12
               

               
Conread position:
               
158-418
               

               
Cow position:
               
chr9:39148870-39149125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
158-422
               

               
Cow position:
               
chr9:60355416-60355162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
52, 124
               

               
Conread position:
               
160-388
               

               
Cow position:
               
chr9:5772897-5772661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 7
               

               
Conread position:
               
160-388
               

               
Cow position:
               
chr9:55807416-55807647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
160-403
               

               
Cow position:
               
chr9:48808937-48809169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
160-501
               

               
Cow position:
               
chr9:4629898-4630230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
161-351
               

               
Cow position:
               
chr9:44526897-44527097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 28
               

               
Conread position:
               
161-419
               

               
Cow position:
               
chr9:59699763-59699500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
112, 42
               

               
Conread position:
               
162-548
               

               
Cow position:
               
chr9:19902884-19903238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
163-425
               

               
Cow position:
               
chr9:63361922-63361666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 113
               

               
Conread position:
               
163-521
               

               
Cow position:
               
chr9:4263303-4262947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
163-556
               

               
Cow position:
               
chr9:40543533-40543141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 166
               

               
Conread position:
               
163-558
               

               
Cow position:
               
chr9:8288411-8288800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr9:25965054-25964644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 169
               

               
Conread position:
               
163-559
               

               
Cow position:
               
chr9:55321441-55321821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
164-376
               

               
Cow position:
               
chr9:13993550-13993769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
164-387
               

               
Cow position:
               
chr9:11506085-11506317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 77
               

               
Conread position:
               
164-414
               

               
Cow position:
               
chr9:36457787-36458043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
164-425
               

               
Cow position:
               
chr9:49545576-49545315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
164-489
               

               
Cow position:
               
chr9:45444947-45445278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 249
               

               
Conread position:
               
165-285
               

               
Cow position:
               
chr9:53433091-53433210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
165-537
               

               
Cow position:
               
chr9:30402638-30402258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
166-352
               

               
Cow position:
               
chr9:24000959-24000777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
166-477
               

               
Cow position:
               
chr9:52755060-52754755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
166-559
               

               
Cow position:
               
chr9:5227368-5226984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
166-559
               

               
Cow position:
               
chr9:12428710-12428326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
114, 216
               

               
Conread position:
               
167-355
               

               
Cow position:
               
chr9:2026293-2026096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
167-425
               

               
Cow position:
               
chr9:7805573-7805827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 119
               

               
Conread position:
               
167-545
               

               
Cow position:
               
chr9:10650494-10650133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr9:34902301-34901932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
168-376
               

               
Cow position:
               
chr9:2397605-2397811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
168-559
               

               
Cow position:
               
chr9:10118873-10118481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 218
               

               
Conread position:
               
169-559
               

               
Cow position:
               
chr9:9724082-9723700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
170-443
               

               
Cow position:
               
chr9:44584396-44584664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
7, 113
               

               
Conread position:
               
172-382
               

               
Cow position:
               
chr9:17785771-17785556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
172-444
               

               
Cow position:
               
chr9:12337699-12337975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 266
               

               
Conread position:
               
172-559
               

               
Cow position:
               
chr9:58979204-58979581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 103
               

               
Conread position:
               
173-350
               

               
Cow position:
               
chr9:51609083-51609253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
173-365
               

               
Cow position:
               
chr9:5836576-5836757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
7, 68
               

               
Conread position:
               
173-373
               

               
Cow position:
               
chr9:11380845-11380645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
173-376
               

               
Cow position:
               
chr9:40221388-40221182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
19, 109
               

               
Conread position:
               
173-388
               

               
Cow position:
               
chr9:1884341-1884114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
173-392
               

               
Cow position:
               
chr9:765815-766018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
173-392
               

               
Cow position:
               
chr9:26715050-26715274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 131
               

               
Conread position:
               
173-429
               

               
Cow position:
               
chr9:3353166-3353413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 42
               

               
Conread position:
               
173-440
               

               
Cow position:
               
chr9:25375932-25375668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
107, 30
               

               
Conread position:
               
173-521
               

               
Cow position:
               
chr9:18425709-18426063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
173-544
               

               
Cow position:
               
chr9:31215879-31216257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
173-556
               

               
Cow position:
               
chr9:8998151-8998537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
173-556
               

               
Cow position:
               
chr9:20681604-20681222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 123
               

               
Conread position:
               
173-559
               

               
Cow position:
               
chr9:20579788-20579422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 109
               

               
Conread position:
               
173-559
               

               
Cow position:
               
chr9:28983001-28983363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
173-559
               

               
Cow position:
               
chr9:43623063-43623440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 153
               

               
Conread position:
               
174-352
               

               
Cow position:
               
chr9:61434238-61434068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
174-517
               

               
Cow position:
               
chr9:32349020-32348680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr9:10906021-10905662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
36, 161
               

               
Conread position:
               
174-559
               

               
Cow position:
               
chr9:5500668-5501041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 22
               

               
Conread position:
               
174-559
               

               
Cow position:
               
chr9:6192654-6192279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 15
               

               
Conread position:
               
175-401
               

               
Cow position:
               
chr9:43352775-43353006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
33, 144
               

               
Conread position:
               
175-410
               

               
Cow position:
               
chr9:41644954-41644712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
28, 151
               

               
Conread position:
               
175-423
               

               
Cow position:
               
chr9:23971090-23970845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 22
               

               
Conread position:
               
175-434
               

               
Cow position:
               
chr9:5342444-5342185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
175-512
               

               
Cow position:
               
chr9:6189560-6189235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
175-559
               

               
Cow position:
               
chr9:29006361-29006745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
176-342
               

               
Cow position:
               
chr9:3946343-3946178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
176-353
               

               
Cow position:
               
chr9:50647875-50648048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
176-360
               

               
Cow position:
               
chr9:1917785-1917967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
176-373
               

               
Cow position:
               
chr9:6237688-6237491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
176-376
               

               
Cow position:
               
chr9:17026999-17027201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
176-376
               

               
Cow position:
               
chr9:31694237-31694027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 157
               

               
Conread position:
               
176-385
               

               
Cow position:
               
chr9:8016674-8016885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
131, 98
               

               
Conread position:
               
176-425
               

               
Cow position:
               
chr9:35049283-35049526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
66, 111
               

               
Conread position:
               
176-546
               

               
Cow position:
               
chr9:26477014-26477387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
176-559
               

               
Cow position:
               
chr9:50977453-50977062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 264
               

               
Conread position:
               
176-559
               

               
Cow position:
               
chr9:52505504-52505123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
176-559
               

               
Cow position:
               
chr9:53762504-53762881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 13
               

               
Conread position:
               
177-368
               

               
Cow position:
               
chr9:63185896-63185698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
177-375
               

               
Cow position:
               
chr9:12355589-12355789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
177-384
               

               
Cow position:
               
chr9:28315228-28315441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
177-386
               

               
Cow position:
               
chr9:34964929-34964729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
177-393
               

               
Cow position:
               
chr9:35933015-35932791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
177-420
               

               
Cow position:
               
chr9:52030285-52030526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
118, 21
               

               
Conread position:
               
177-423
               

               
Cow position:
               
chr9:16216779-16217026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
25, 202
               

               
Conread position:
               
177-449
               

               
Cow position:
               
chr9:47517002-47517271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
177-469
               

               
Cow position:
               
chr9:8629104-8628822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
177-496
               

               
Cow position:
               
chr9:58132145-58131843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
177-511
               

               
Cow position:
               
chr9:44396463-44396795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
112, 221
               

               
Conread position:
               
177-555
               

               
Cow position:
               
chr9:41728063-41728436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
177-556
               

               
Cow position:
               
chr9:14975122-14974749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
96, 20
               

               
Conread position:
               
177-557
               

               
Cow position:
               
chr9:49709646-49710020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
92, 29
               

               
Conread position:
               
177-558
               

               
Cow position:
               
chr9:38792821-38793196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 31
               

               
Conread position:
               
177-558
               

               
Cow position:
               
chr9:50607126-50606766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
177-559
               

               
Cow position:
               
chr9:20318772-20318394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
33, 148
               

               
Conread position:
               
177-559
               

               
Cow position:
               
chr9:22318164-22318526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
177-559
               

               
Cow position:
               
chr9:26279368-26278993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
177-559
               

               
Cow position:
               
chr9:29824819-29825220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
177-559
               

               
Cow position:
               
chr9:34697497-34697113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
177-559
               

               
Cow position:
               
chr9:45141792-45141421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
178-284
               

               
Cow position:
               
chr9:42986508-42986402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
178-349
               

               
Cow position:
               
chr9:34001187-34001015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
127, 29
               

               
Conread position:
               
178-352
               

               
Cow position:
               
chr9:35534196-35534019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 66
               

               
Conread position:
               
178-353
               

               
Cow position:
               
chr9:58734061-58734239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
178-355
               

               
Cow position:
               
chr9:19657167-19656993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
178-362
               

               
Cow position:
               
chr9:3536695-3536513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
93, 55
               

               
Conread position:
               
178-365
               

               
Cow position:
               
chr9:61637240-61637410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
178-382
               

               
Cow position:
               
chr9:31344801-31344597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
93, 10
               

               
Conread position:
               
178-382
               

               
Cow position:
               
chr9:48281996-48282212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
178-385
               

               
Cow position:
               
chr9:5155902-5156114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
178-392
               

               
Cow position:
               
chr9:5187054-5186847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
178-395
               

               
Cow position:
               
chr9:8535662-8535891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
178-396
               

               
Cow position:
               
chr9:24079107-24079326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
178-434
               

               
Cow position:
               
chr9:8992375-8992117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
178-492
               

               
Cow position:
               
chr9:20466141-20465843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
178-556
               

               
Cow position:
               
chr9:52689811-52689444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 148
               

               
Conread position:
               
178-559
               

               
Cow position:
               
chr9:19637815-19637458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
178-559
               

               
Cow position:
               
chr9:34286605-34286984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
179-317
               

               
Cow position:
               
chr9:60138603-60138740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
179-352
               

               
Cow position:
               
chr9:30194816-30194991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
6, 104
               

               
Conread position:
               
179-371
               

               
Cow position:
               
chr9:52257652-52257464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
179-372
               

               
Cow position:
               
chr9:11393407-11393207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
10, 153
               

               
Conread position:
               
179-401
               

               
Cow position:
               
chr9:23840598-23840366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
90, 17
               

               
Conread position:
               
179-425
               

               
Cow position:
               
chr9:7611983-7611739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
31, 83
               

               
Conread position:
               
179-431
               

               
Cow position:
               
chr9:35845211-35844953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
123, 18
               

               
Conread position:
               
179-435
               

               
Cow position:
               
chr9:35729229-35728971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
179-435
               

               
Cow position:
               
chr9:38289513-38289264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
179-455
               

               
Cow position:
               
chr9:5110661-5110940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
179-474
               

               
Cow position:
               
chr9:6954446-6954148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
179-497
               

               
Cow position:
               
chr9:51717783-51717459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
130, 10
               

               
Conread position:
               
179-512
               

               
Cow position:
               
chr9:34410587-34410259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
179-559
               

               
Cow position:
               
chr9:5327068-5327438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
179-559
               

               
Cow position:
               
chr9:6839804-6840191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 14
               

               
Conread position:
               
179-559
               

               
Cow position:
               
chr9:29091576-29091984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
179-559
               

               
Cow position:
               
chr9:48118870-48118513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
179-559
               

               
Cow position:
               
chr9:52485109-52484733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 105
               

               
Conread position:
               
180-335
               

               
Cow position:
               
chr9:8066229-8066079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
180-366
               

               
Cow position:
               
chr9:20828710-20828900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
180-379
               

               
Cow position:
               
chr9:6446910-6447115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
180-438
               

               
Cow position:
               
chr9:56827277-56827547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
180-490
               

               
Cow position:
               
chr9:37934432-37934122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
92, 135
               

               
Conread position:
               
180-509
               

               
Cow position:
               
chr9:49863748-49863414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
180-558
               

               
Cow position:
               
chr9:12910595-12910216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
180-558
               

               
Cow position:
               
chr9:40303326-40302946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
210, 18
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr9:7409586-7409966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
196, 23
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr9:9199965-9199600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr9:10144684-10144292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 204
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr9:28772946-28773305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr9:32676484-32676866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
107, 54
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr9:43207573-43207193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 248
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr9:44709641-44710009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
341, 17
               

               
Conread position:
               
180-559
               

               
Cow position:
               
chr9:47868828-47869187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
181-371
               

               
Cow position:
               
chr9:11447999-11447809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
99, 134
               

               
Conread position:
               
181-374
               

               
Cow position:
               
chr9:55013536-55013330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 186
               

               
Conread position:
               
181-425
               

               
Cow position:
               
chr9:48016799-48017034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
186, 17
               

               
Conread position:
               
181-517
               

               
Cow position:
               
chr9:3573267-3573611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
18, 166
               

               
Conread position:
               
181-520
               

               
Cow position:
               
chr9:33696866-33697173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
268, 26
               

               
Conread position:
               
181-521
               

               
Cow position:
               
chr9:62724348-62724682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
18, 119
               

               
Conread position:
               
181-559
               

               
Cow position:
               
chr9:26057622-26057256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
182-350
               

               
Cow position:
               
chr9:41653758-41653596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 110
               

               
Conread position:
               
182-377
               

               
Cow position:
               
chr9:61301169-61300972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
182-385
               

               
Cow position:
               
chr9:12268843-12269043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
182-387
               

               
Cow position:
               
chr9:52649039-52648842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
182-396
               

               
Cow position:
               
chr9:7543449-7543235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
182-398
               

               
Cow position:
               
chr9:8967752-8967961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
182-494
               

               
Cow position:
               
chr9:33584876-33584564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 222
               

               
Conread position:
               
182-508
               

               
Cow position:
               
chr9:5900141-5899829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
194, 21
               

               
Conread position:
               
182-520
               

               
Cow position:
               
chr9:20815677-20816007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
102, 21
               

               
Conread position:
               
182-555
               

               
Cow position:
               
chr9:647583-647955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
182-559
               

               
Cow position:
               
chr9:9753594-9753205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
182-559
               

               
Cow position:
               
chr9:18380675-18381043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 97
               

               
Conread position:
               
182-559
               

               
Cow position:
               
chr9:28747709-28747341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
182-559
               

               
Cow position:
               
chr9:31625938-31626329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
23, 182
               

               
Conread position:
               
183-323
               

               
Cow position:
               
chr9:18716268-18716408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
119, 105
               

               
Conread position:
               
183-345
               

               
Cow position:
               
chr9:20394506-20394342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 102
               

               
Conread position:
               
183-355
               

               
Cow position:
               
chr9:47510760-47510587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
135, 124
               

               
Conread position:
               
183-372
               

               
Cow position:
               
chr9:61019556-61019362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
183-376
               

               
Cow position:
               
chr9:54677070-54677268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
100, 14
               

               
Conread position:
               
183-381
               

               
Cow position:
               
chr9:6929988-6929782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 136
               

               
Conread position:
               
183-381
               

               
Cow position:
               
chr9:37951089-37950888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
183-388
               

               
Cow position:
               
chr9:32662228-32662015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 136
               

               
Conread position:
               
183-388
               

               
Cow position:
               
chr9:35295502-35295706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
183-396
               

               
Cow position:
               
chr9:6392472-6392671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
183-408
               

               
Cow position:
               
chr9:43679931-43680156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
183-425
               

               
Cow position:
               
chr9:28156510-28156746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
183-435
               

               
Cow position:
               
chr9:2037245-2037493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
23, 200
               

               
Conread position:
               
183-445
               

               
Cow position:
               
chr9:44822513-44822254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
24, 96
               

               
Conread position:
               
183-521
               

               
Cow position:
               
chr9:38624817-38624484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 54
               

               
Conread position:
               
183-531
               

               
Cow position:
               
chr9:33114147-33114501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 205
               

               
Conread position:
               
183-532
               

               
Cow position:
               
chr9:33668555-33668882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
252, 24
               

               
Conread position:
               
183-548
               

               
Cow position:
               
chr9:1370745-1371108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
150, 51
               

               
Conread position:
               
183-556
               

               
Cow position:
               
chr9:17677310-17676940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 146
               

               
Conread position:
               
183-558
               

               
Cow position:
               
chr9:62150918-62151284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
183-559
               

               
Cow position:
               
chr9:8723606-8723976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 24
               

               
Conread position:
               
183-559
               

               
Cow position:
               
chr9:13670445-13670816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 102
               

               
Conread position:
               
183-559
               

               
Cow position:
               
chr9:35028356-35027984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 20
               

               
Conread position:
               
183-559
               

               
Cow position:
               
chr9:39152852-39152498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
183-559
               

               
Cow position:
               
chr9:39428970-39428616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
183-559
               

               
Cow position:
               
chr9:42061901-42062296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 255
               

               
Conread position:
               
183-559
               

               
Cow position:
               
chr9:58448317-58447939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
25, 257
               

               
Conread position:
               
184-326
               

               
Cow position:
               
chr9:42608589-42608722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
184-326
               

               
Cow position:
               
chr9:60036436-60036573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
24, 97
               

               
Conread position:
               
184-352
               

               
Cow position:
               
chr9:388382-388213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
18, 95
               

               
Conread position:
               
184-368
               

               
Cow position:
               
chr9:64140751-64140563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
110, 24
               

               
Conread position:
               
184-369
               

               
Cow position:
               
chr9:54364038-54363863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
184-381
               

               
Cow position:
               
chr9:20017209-20017407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
184-388
               

               
Cow position:
               
chr9:26557775-26557984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
184-392
               

               
Cow position:
               
chr9:55191248-55191457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 77
               

               
Conread position:
               
184-424
               

               
Cow position:
               
chr9:63700957-63700721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
184-425
               

               
Cow position:
               
chr9:42586736-42586504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
184-432
               

               
Cow position:
               
chr9:4241218-4241466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 93
               

               
Conread position:
               
184-489
               

               
Cow position:
               
chr9:23956165-23955870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
184-512
               

               
Cow position:
               
chr9:40005292-40005612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
184-544
               

               
Cow position:
               
chr9:48563889-48564251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
103, 84
               

               
Conread position:
               
184-554
               

               
Cow position:
               
chr9:40215059-40215422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
184-558
               

               
Cow position:
               
chr9:6397974-6397598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 13
               

               
Conread position:
               
184-558
               

               
Cow position:
               
chr9:31640514-31640139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
184-559
               

               
Cow position:
               
chr9:20406468-20406818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
101, 19
               

               
Conread position:
               
184-559
               

               
Cow position:
               
chr9:45285727-45285347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
184-559
               

               
Cow position:
               
chr9:57274028-57274416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
185-333
               

               
Cow position:
               
chr9:34399482-34399632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
185-371
               

               
Cow position:
               
chr9:35403392-35403582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
185-372
               

               
Cow position:
               
chr9:8537118-8537305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 131
               

               
Conread position:
               
185-375
               

               
Cow position:
               
chr9:5172722-5172530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:8613401-8613198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
102, 55
               

               
Conread position:
               
185-415
               

               
Cow position:
               
chr9:11098639-11098413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 97
               

               
Conread position:
               
185-418
               

               
Cow position:
               
chr9:35832798-35832573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
185-432
               

               
Cow position:
               
chr9:33347666-33347430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
185-433
               

               
Cow position:
               
chr9:5104597-5104342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
185-465
               

               
Cow position:
               
chr9:58662054-58662328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 171
               

               
Conread position:
               
185-492
               

               
Cow position:
               
chr9:23943101-23943399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 10
               

               
Conread position:
               
185-492
               

               
Cow position:
               
chr9:38941625-38941315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 257
               

               
Conread position:
               
185-492
               

               
Cow position:
               
chr9:41785033-41785337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 89
               

               
Conread position:
               
185-496
               

               
Cow position:
               
chr9:45728589-45728900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
54, 247
               

               
Conread position:
               
185-556
               

               
Cow position:
               
chr9:16120982-16121349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
18, 122
               

               
Conread position:
               
185-556
               

               
Cow position:
               
chr9:53258246-53257876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
23, 244
               

               
Conread position:
               
185-557
               

               
Cow position:
               
chr9:4341344-4340988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
185-558
               

               
Cow position:
               
chr9:9573132-9573515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
102, 118
               

               
Conread position:
               
185-558
               

               
Cow position:
               
chr9:36410535-36410173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
185-559
               

               
Cow position:
               
chr9:43048807-43048442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 179
               

               
Conread position:
               
186-306
               

               
Cow position:
               
chr9:21839990-21840107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
186-388
               

               
Cow position:
               
chr9:8645077-8645283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
186-458
               

               
Cow position:
               
chr9:50382505-50382242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
186-477
               

               
Cow position:
               
chr9:3356946-3356654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
22, 131
               

               
Conread position:
               
186-491
               

               
Cow position:
               
chr9:40507781-40507489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
186-511
               

               
Cow position:
               
chr9:13744121-13743797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 248
               

               
Conread position:
               
186-520
               

               
Cow position:
               
chr9:1867284-1867594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
186-525
               

               
Cow position:
               
chr9:7952716-7953049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 10
               

               
Conread position:
               
187-321
               

               
Cow position:
               
chr9:38370289-38370426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
187-369
               

               
Cow position:
               
chr9:13141342-13141534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 186
               

               
Conread position:
               
187-376
               

               
Cow position:
               
chr9:36624113-36623921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
187-382
               

               
Cow position:
               
chr9:22447481-22447284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
187-396
               

               
Cow position:
               
chr9:34917363-34917163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
187-412
               

               
Cow position:
               
chr9:34034084-34034295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 111
               

               
Conread position:
               
187-425
               

               
Cow position:
               
chr9:22466594-22466825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
187-543
               

               
Cow position:
               
chr9:12280785-12281137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
187-548
               

               
Cow position:
               
chr9:5433457-5433811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
187-552
               

               
Cow position:
               
chr9:47591172-47590802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 243
               

               
Conread position:
               
187-558
               

               
Cow position:
               
chr9:56453158-56453511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 85
               

               
Conread position:
               
187-559
               

               
Cow position:
               
chr9:13205752-13205384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
187-559
               

               
Cow position:
               
chr9:20847761-20848115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
187-559
               

               
Cow position:
               
chr9:22637908-22638287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 224
               

               
Conread position:
               
187-559
               

               
Cow position:
               
chr9:33940410-33940791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
188-317
               

               
Cow position:
               
chr9:43876141-43876011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
188-338
               

               
Cow position:
               
chr9:64302817-64302665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
87, 48
               

               
Conread position:
               
188-355
               

               
Cow position:
               
chr9:3369811-3369977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
188-365
               

               
Cow position:
               
chr9:9494973-9495149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
14, 68
               

               
Conread position:
               
188-372
               

               
Cow position:
               
chr9:26388031-26388208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
188-374
               

               
Cow position:
               
chr9:34264898-34265097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
94, 53
               

               
Conread position:
               
188-390
               

               
Cow position:
               
chr9:19771175-19771380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
188-390
               

               
Cow position:
               
chr9:59586129-59586329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
188-414
               

               
Cow position:
               
chr9:16121344-16121565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
188-425
               

               
Cow position:
               
chr9:53390390-53390132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
188-496
               

               
Cow position:
               
chr9:53109066-53109373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 88
               

               
Conread position:
               
188-508
               

               
Cow position:
               
chr9:52513652-52513320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
8, 261
               

               
Conread position:
               
188-557
               

               
Cow position:
               
chr9:8901417-8901042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 135
               

               
Conread position:
               
188-559
               

               
Cow position:
               
chr9:9403357-9402992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
188-559
               

               
Cow position:
               
chr9:19555203-19555558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
188-559
               

               
Cow position:
               
chr9:52130829-52131205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
189-325
               

               
Cow position:
               
chr9:48115087-48115215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
189-350
               

               
Cow position:
               
chr9:33248146-33247992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
189-352
               

               
Cow position:
               
chr9:9985009-9985169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
97, 45
               

               
Conread position:
               
189-352
               

               
Cow position:
               
chr9:54640002-54639839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 150
               

               
Conread position:
               
189-364
               

               
Cow position:
               
chr9:51891065-51891238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 89
               

               
Conread position:
               
189-365
               

               
Cow position:
               
chr9:17719089-17719255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
189-365
               

               
Cow position:
               
chr9:27495048-27495230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
189-371
               

               
Cow position:
               
chr9:27261577-27261391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
189-371
               

               
Cow position:
               
chr9:37062415-37062593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
189-371
               

               
Cow position:
               
chr9:54611502-54611317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
189-376
               

               
Cow position:
               
chr9:16115791-16115604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
18, 90
               

               
Conread position:
               
189-381
               

               
Cow position:
               
chr9:41717880-41717683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
189-381
               

               
Cow position:
               
chr9:58255312-58255502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
189-382
               

               
Cow position:
               
chr9:32858829-32858625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
14, 138
               

               
Conread position:
               
189-388
               

               
Cow position:
               
chr9:36401843-36401649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
189-396
               

               
Cow position:
               
chr9:34760550-34760340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
189-397
               

               
Cow position:
               
chr9:19718517-19718315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
189-399
               

               
Cow position:
               
chr9:35466709-35466495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
189-425
               

               
Cow position:
               
chr9:26102551-26102776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
189-431
               

               
Cow position:
               
chr9:52763937-52763700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
238, 45
               

               
Conread position:
               
189-433
               

               
Cow position:
               
chr9:36453721-36453479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 8
               

               
Conread position:
               
189-517
               

               
Cow position:
               
chr9:42264037-42264348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 94
               

               
Conread position:
               
189-519
               

               
Cow position:
               
chr9:20755946-20755615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
14, 165
               

               
Conread position:
               
189-524
               

               
Cow position:
               
chr9:32670131-32669799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
189-530
               

               
Cow position:
               
chr9:39011651-39011322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
189-547
               

               
Cow position:
               
chr9:60395232-60394879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
189-548
               

               
Cow position:
               
chr9:25546473-25546809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
189-548
               

               
Cow position:
               
chr9:25556800-25557138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
189-548
               

               
Cow position:
               
chr9:32019513-32019158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
21, 165
               

               
Conread position:
               
189-556
               

               
Cow position:
               
chr9:35128292-35128677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
189-556
               

               
Cow position:
               
chr9:51721070-51720721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 9
               

               
Conread position:
               
189-559
               

               
Cow position:
               
chr9:6934265-6933890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
189-559
               

               
Cow position:
               
chr9:8950708-8951089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
189-559
               

               
Cow position:
               
chr9:13993975-13994370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
62, 139
               

               
Conread position:
               
189-559
               

               
Cow position:
               
chr9:20901304-20900938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
189-559
               

               
Cow position:
               
chr9:52619460-52619832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
189-559
               

               
Cow position:
               
chr9:61302818-61303187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
190-363
               

               
Cow position:
               
chr9:22360689-22360854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
190-371
               

               
Cow position:
               
chr9:5357838-5358010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
190-388
               

               
Cow position:
               
chr9:32052092-32052292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
190-402
               

               
Cow position:
               
chr9:34135546-34135746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
190-418
               

               
Cow position:
               
chr9:12786657-12786427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
91, 13
               

               
Conread position:
               
190-425
               

               
Cow position:
               
chr9:22408571-22408810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
12, 202
               

               
Conread position:
               
190-469
               

               
Cow position:
               
chr9:13460591-13460325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
224, 47
               

               
Conread position:
               
190-556
               

               
Cow position:
               
chr9:13169845-13169485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 13
               

               
Conread position:
               
190-558
               

               
Cow position:
               
chr9:11950216-11949835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
90, 127
               

               
Conread position:
               
190-559
               

               
Cow position:
               
chr9:54681338-54681686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 45
               

               
Conread position:
               
190-559
               

               
Cow position:
               
chr9:55256732-55256367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
191-348
               

               
Cow position:
               
chr9:48367711-48367550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
191-369
               

               
Cow position:
               
chr9:16826384-16826199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 169
               

               
Conread position:
               
191-371
               

               
Cow position:
               
chr9:14519557-14519382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
191-382
               

               
Cow position:
               
chr9:4257160-4256977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
17, 76
               

               
Conread position:
               
191-384
               

               
Cow position:
               
chr9:8834313-8834115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
191-399
               

               
Cow position:
               
chr9:32812007-32812204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
191-402
               

               
Cow position:
               
chr9:5068655-5068871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
191-434
               

               
Cow position:
               
chr9:39315681-39315913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 69
               

               
Conread position:
               
191-528
               

               
Cow position:
               
chr9:28917670-28917326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
12, 63
               

               
Conread position:
               
191-538
               

               
Cow position:
               
chr9:20322275-20321942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
22, 56
               

               
Conread position:
               
191-559
               

               
Cow position:
               
chr9:6338609-6338982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
191-559
               

               
Cow position:
               
chr9:15806109-15805741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 125
               

               
Conread position:
               
191-559
               

               
Cow position:
               
chr9:26085875-26086247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
67, 196
               

               
Conread position:
               
192-372
               

               
Cow position:
               
chr9:57642331-57642507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
192-376
               

               
Cow position:
               
chr9:40270731-40270541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
192-391
               

               
Cow position:
               
chr9:12495033-12495233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
87, 163
               

               
Conread position:
               
192-410
               

               
Cow position:
               
chr9:62631848-62631633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
143, 84
               

               
Conread position:
               
192-548
               

               
Cow position:
               
chr9:389178-388839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
235, 36
               

               
Conread position:
               
192-549
               

               
Cow position:
               
chr9:30477955-30477607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
192-556
               

               
Cow position:
               
chr9:11168563-11168911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
192-559
               

               
Cow position:
               
chr9:5441830-5442176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
341, 52
               

               
Conread position:
               
192-559
               

               
Cow position:
               
chr9:34375109-34374748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 227
               

               
Conread position:
               
192-559
               

               
Cow position:
               
chr9:52406988-52407350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
193-379
               

               
Cow position:
               
chr9:17769142-17769324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
193-389
               

               
Cow position:
               
chr9:32773042-32773230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
193-421
               

               
Cow position:
               
chr9:11030004-11030233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
194-349
               

               
Cow position:
               
chr9:13722319-13722161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
194-386
               

               
Cow position:
               
chr9:40984325-40984519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
194-402
               

               
Cow position:
               
chr9:22804149-22803941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
194-441
               

               
Cow position:
               
chr9:52519000-52518754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
194-491
               

               
Cow position:
               
chr9:1878178-1877892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
194-559
               

               
Cow position:
               
chr9:28726908-28726537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
194-559
               

               
Cow position:
               
chr9:54716794-54716431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
195-472
               

               
Cow position:
               
chr9:9686597-9686318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 189
               

               
Conread position:
               
195-547
               

               
Cow position:
               
chr9:5757158-5756831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
195-558
               

               
Cow position:
               
chr9:25804649-25805017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 240
               

               
Conread position:
               
196-361
               

               
Cow position:
               
chr9:55284518-55284355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
196-391
               

               
Cow position:
               
chr9:58440557-58440351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
196-395
               

               
Cow position:
               
chr9:53496940-53496731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
65, 115
               

               
Conread position:
               
196-398
               

               
Cow position:
               
chr9:12129131-12129333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
97, 136
               

               
Conread position:
               
196-415
               

               
Cow position:
               
chr9:32089216-32089431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
196-420
               

               
Cow position:
               
chr9:3924278-3924491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
20, 73
               

               
Conread position:
               
196-442
               

               
Cow position:
               
chr9:61351524-61351268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
196-473
               

               
Cow position:
               
chr9:17840855-17840577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
196-493
               

               
Cow position:
               
chr9:6951935-6952224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
185, 78
               

               
Conread position:
               
196-513
               

               
Cow position:
               
chr9:31359428-31359738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
196-557
               

               
Cow position:
               
chr9:19067591-19067959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 144
               

               
Conread position:
               
196-558
               

               
Cow position:
               
chr9:41789125-41789466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
196-559
               

               
Cow position:
               
chr9:42037494-42037836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
197-389
               

               
Cow position:
               
chr9:36634328-36634524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
197-409
               

               
Cow position:
               
chr9:42508652-42508869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
92, 103
               

               
Conread position:
               
197-425
               

               
Cow position:
               
chr9:29819550-29819771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
197-425
               

               
Cow position:
               
chr9:33151573-33151795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
197-425
               

               
Cow position:
               
chr9:54986336-54986102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
197-559
               

               
Cow position:
               
chr9:3387540-3387875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
321, 67
               

               
Conread position:
               
197-559
               

               
Cow position:
               
chr9:48627847-48628211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 230
               

               
Conread position:
               
197-559
               

               
Cow position:
               
chr9:49764469-49764839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
69, 244
               

               
Conread position:
               
198-326
               

               
Cow position:
               
chr9:11092339-11092209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
198-357
               

               
Cow position:
               
chr9:21816355-21816516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
198-365
               

               
Cow position:
               
chr9:47928745-47928899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
198-381
               

               
Cow position:
               
chr9:34423443-34423631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
198-382
               

               
Cow position:
               
chr9:34362561-34362748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
198-388
               

               
Cow position:
               
chr9:3847218-3847418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
198-392
               

               
Cow position:
               
chr9:32877883-32878074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
43, 78
               

               
Conread position:
               
198-392
               

               
Cow position:
               
chr9:59897421-59897609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
198-397
               

               
Cow position:
               
chr9:26394524-26394325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 179
               

               
Conread position:
               
198-398
               

               
Cow position:
               
chr9:35306524-35306320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
198-398
               

               
Cow position:
               
chr9:46344750-46344962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
198-412
               

               
Cow position:
               
chr9:8767589-8767375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
154, 15
               

               
Conread position:
               
198-424
               

               
Cow position:
               
chr9:36627947-36628170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
198-425
               

               
Cow position:
               
chr9:22440648-22440429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
198-425
               

               
Cow position:
               
chr9:43159580-43159805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 36
               

               
Conread position:
               
198-435
               

               
Cow position:
               
chr9:17277069-17276825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 128
               

               
Conread position:
               
198-461
               

               
Cow position:
               
chr9:34279235-34278969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
11, 172
               

               
Conread position:
               
198-467
               

               
Cow position:
               
chr9:37198952-37199215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 98
               

               
Conread position:
               
198-476
               

               
Cow position:
               
chr9:9459814-9460076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 71
               

               
Conread position:
               
198-478
               

               
Cow position:
               
chr9:35547088-35547374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
6, 128
               

               
Conread position:
               
198-493
               

               
Cow position:
               
chr9:9311682-9311977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 233
               

               
Conread position:
               
198-508
               

               
Cow position:
               
chr9:8636503-8636802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 38
               

               
Conread position:
               
198-517
               

               
Cow position:
               
chr9:60080717-60081047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 176
               

               
Conread position:
               
198-521
               

               
Cow position:
               
chr9:34283781-34284093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
198-532
               

               
Cow position:
               
chr9:27279131-27279466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 233
               

               
Conread position:
               
198-535
               

               
Cow position:
               
chr9:26345137-26344809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 87
               

               
Conread position:
               
198-537
               

               
Cow position:
               
chr9:3378587-3378906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
198-544
               

               
Cow position:
               
chr9:5456347-5456005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
320, 87
               

               
Conread position:
               
198-546
               

               
Cow position:
               
chr9:6852226-6851897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
325, 33
               

               
Conread position:
               
198-548
               

               
Cow position:
               
chr9:9596125-9595782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 90
               

               
Conread position:
               
198-556
               

               
Cow position:
               
chr9:21030127-21030493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
12, 129
               

               
Conread position:
               
198-558
               

               
Cow position:
               
chr9:15215865-15215502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
81, 239
               

               
Conread position:
               
198-558
               

               
Cow position:
               
chr9:36491079-36490709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
198-558
               

               
Cow position:
               
chr9:55795583-55795939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 142
               

               
Conread position:
               
198-559
               

               
Cow position:
               
chr9:9443777-9443413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
198-559
               

               
Cow position:
               
chr9:9551911-9552271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 49
               

               
Conread position:
               
198-559
               

               
Cow position:
               
chr9:11299849-11299507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 91
               

               
Conread position:
               
198-559
               

               
Cow position:
               
chr9:17799460-17799811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 86
               

               
Conread position:
               
198-559
               

               
Cow position:
               
chr9:33219131-33218768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
198-559
               

               
Cow position:
               
chr9:34689780-34689419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 179
               

               
Conread position:
               
198-559
               

               
Cow position:
               
chr9:51620269-51620620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 93
               

               
Conread position:
               
198-561
               

               
Cow position:
               
chr9:49374005-49374375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
10, 214
               

               
Conread position:
               
199-317
               

               
Cow position:
               
chr9:1894191-1894067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
199-345
               

               
Cow position:
               
chr9:45369358-45369219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
199-376
               

               
Cow position:
               
chr9:8467885-8468061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
199-401
               

               
Cow position:
               
chr9:9358385-9358181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 140
               

               
Conread position:
               
199-412
               

               
Cow position:
               
chr9:54664674-54664893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
87, 146
               

               
Conread position:
               
199-418
               

               
Cow position:
               
chr9:13742362-13742569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
199-426
               

               
Cow position:
               
chr9:63785085-63784861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
199-427
               

               
Cow position:
               
chr9:47214724-47214489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
199-462
               

               
Cow position:
               
chr9:59998204-59997946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
199-477
               

               
Cow position:
               
chr9:58452244-58451978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
199-488
               

               
Cow position:
               
chr9:45171398-45171106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
199-545
               

               
Cow position:
               
chr9:50202380-50202739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
83, 239
               

               
Conread position:
               
199-558
               

               
Cow position:
               
chr9:52638346-52637977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr9:4861222-4861572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr9:9516922-9516586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 72
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr9:18253094-18252743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 122
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr9:30137949-30138310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr9:41282838-41283207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 229
               

               
Conread position:
               
199-559
               

               
Cow position:
               
chr9:59013512-59013150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 163
               

               
Conread position:
               
200-326
               

               
Cow position:
               
chr9:52643421-52643551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
200-365
               

               
Cow position:
               
chr9:34666279-34666437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
200-365
               

               
Cow position:
               
chr9:53323960-53323791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
200-401
               

               
Cow position:
               
chr9:18226923-18226706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
200-544
               

               
Cow position:
               
chr9:5263331-5263669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
200-556
               

               
Cow position:
               
chr9:1751156-1751515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
67, 48
               

               
Conread position:
               
200-559
               

               
Cow position:
               
chr9:32307407-32307053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 182
               

               
Conread position:
               
201-326
               

               
Cow position:
               
chr9:43784873-43784739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
202-322
               

               
Cow position:
               
chr9:35905168-35905050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
202-330
               

               
Cow position:
               
chr9:6634755-6634633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
202-355
               

               
Cow position:
               
chr9:26493649-26493792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
202-374
               

               
Cow position:
               
chr9:45740315-45740140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
202-376
               

               
Cow position:
               
chr9:54598502-54598677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
202-398
               

               
Cow position:
               
chr9:12773523-12773716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
202-398
               

               
Cow position:
               
chr9:20525242-20525433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 36
               

               
Conread position:
               
202-398
               

               
Cow position:
               
chr9:43202167-43202360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
202-402
               

               
Cow position:
               
chr9:40603496-40603698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
202-418
               

               
Cow position:
               
chr9:27345760-27345538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
74, 109
               

               
Conread position:
               
202-532
               

               
Cow position:
               
chr9:52267933-52267600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 39
               
UCSC Genome Browser

               
Conread position:
               
202-538
               

               
Cow position:
               
chr9:51566669-51566333 (view  custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
78, 235
               
UCSC Genome Browser

               
               
               
Conread position:
202-558

               
               
               
Cow position:
chr9:56032488-56032146 (view  custom track)

               
               
               
Alignm length:
360

               
               
               
Alignm identity:
249

               
               
               
Alignm E-value:
3.9937e-43

               
               
               
Alignm gaps (pig, cow):
85, 228
UCSC Genome Browser

               
               
               
Conread position:
202-559

               
               
               
Cow position:
chr9:37016730-37017068 (view  custom track)

               
               
               
Alignm length:
363

               
               
               
Alignm identity:
247

               
               
               
Alignm E-value:
4e-34

               
               
               
Alignm gaps (pig, cow):
38, 14

               
               
               Conread position:202-559
               
               
               Cow position:chr9:46981393-46981052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):182, 33

               
               
               Conread position:202-559
               
               
               Cow position:chr9:58614326-58614673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 76

               
               
               Conread position:203-350
               
               
               Cow position:chr9:20355699-20355845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:203-367
               
               
               Cow position:chr9:62136287-62136119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:203-376
               
               
               Cow position:chr9:44625049-44625216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:203-388
               
               
               Cow position:chr9:34276383-34276194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):84, 118

               
               
               Conread position:203-399
               
               
               Cow position:chr9:9557513-9557713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:203-425
               
               
               Cow position:chr9:14738082-14738302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:203-435
               
               
               Cow position:chr9:57131328-57131558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:203-533
               
               
               Cow position:chr9:43757374-43757695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 32

               
               
               Conread position:203-536
               
               
               Cow position:chr9:27355748-27356081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:203-536
               
               
               Cow position:chr9:27358534-27358867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:203-553
               
               
               Cow position:chr9:61022449-61022788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 178

               
               
               Conread position:203-558
               
               
               Cow position:chr9:20942789-20942427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 112

               
               
               Conread position:203-559
               
               
               Cow position:chr9:24887035-24887382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 217

               
               
               Conread position:203-559
               
               
               Cow position:chr9:26440984-26440616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:203-559
               
               
               Cow position:chr9:33597803-33598165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 240

               
               
               Conread position:203-559
               
               
               Cow position:chr9:63896376-63896714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 57

               
               
               Conread position:203-560
               
               
               Cow position:chr9:21460323-21459973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:204-338
               
               
               Cow position:chr9:33201217-33201080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:204-376
               
               
               Cow position:chr9:8592599-8592423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:204-390
               
               
               Cow position:chr9:61286592-61286780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:204-423
               
               
               Cow position:chr9:44759096-44758881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:204-424
               
               
               Cow position:chr9:39709684-39709909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):76, 202

               
               
               Conread position:204-488
               
               
               Cow position:chr9:52510946-52511227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 179

               
               
               Conread position:204-544
               
               
               Cow position:chr9:11123649-11123316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:204-544
               
               
               Cow position:chr9:17872276-17871935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 80

               
               
               Conread position:204-558
               
               
               Cow position:chr9:31346780-31347137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 189

               
               
               Conread position:204-558
               
               
               Cow position:chr9:53139304-53138948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):85, 157

               
               
               Conread position:204-559
               
               
               Cow position:chr9:1729856-1729492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 266

               
               
               Conread position:204-559
               
               
               Cow position:chr9:31638827-31638457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:205-357
               
               
               Cow position:chr9:34743168-34743016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):107, 62

               
               
               Conread position:205-442
               
               
               Cow position:chr9:63169801-63170041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:205-559
               
               
               Cow position:chr9:16300742-16300382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:207-352
               
               
               Cow position:chr9:23027361-23027504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:207-364
               
               
               Cow position:chr9:9243378-9243543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:207-371
               
               
               Cow position:chr9:58611142-58611305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:207-373
               
               
               Cow position:chr9:11873461-11873303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:207-414
               
               
               Cow position:chr9:21292573-21292365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:207-415
               
               
               Cow position:chr9:42687911-42687718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:207-425
               
               
               Cow position:chr9:7806120-7805908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:207-540
               
               
               Cow position:chr9:64637386-64637707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):80, 53

               
               
               Conread position:207-558
               
               
               Cow position:chr9:41679596-41679928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:207-559
               
               
               Cow position:chr9:26403629-26403969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):317, 67

               
               
               Conread position:207-559
               
               
               Cow position:chr9:35167003-35167356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 27

               
               
               Conread position:207-559
               
               
               Cow position:chr9:42497662-42498013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 81

               
               
               Conread position:207-559
               
               
               Cow position:chr9:55117916-55118263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):69, 178

               
               
               Conread position:207-559
               
               
               Cow position:chr9:56065400-56065732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:207-559
               
               
               Cow position:chr9:64105737-64106091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 91

               
               
               Conread position:208-401
               
               
               Cow position:chr9:34707475-34707283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:155
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:208-418
               
               
               Cow position:chr9:49402483-49402697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 157

               
               
               Conread position:208-474
               
               
               Cow position:chr9:33822952-33823217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:208-516
               
               
               Cow position:chr9:9580661-9580373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:208-559
               
               
               Cow position:chr9:22152247-22151903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:209-350
               
               
               Cow position:chr9:4244260-4244406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:209-369
               
               
               Cow position:chr9:20712674-20712833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:209-465
               
               
               Cow position:chr9:5650125-5649883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):235, 27

               
               
               Conread position:209-477
               
               
               Cow position:chr9:33541887-33542157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):10, 224

               
               
               Conread position:209-551
               
               
               Cow position:chr9:54492974-54493299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:209-558
               
               
               Cow position:chr9:12226149-12225798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 121

               
               
               Conread position:209-559
               
               
               Cow position:chr9:30123766-30124104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:209-559
               
               
               Cow position:chr9:52578703-52578353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:211-532
               
               
               Cow position:chr9:5835988-5836316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:211-557
               
               
               Cow position:chr9:61738759-61739100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):67, 234

               
               
               Conread position:214-559
               
               
               Cow position:chr9:8919845-8920182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):209, 70

               
               
               Conread position:215-362
               
               
               Cow position:chr9:11200098-11199947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:215-559
               
               
               Cow position:chr9:3070575-3070233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:216-365
               
               
               Cow position:chr9:28342812-28342658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:216-372
               
               
               Cow position:chr9:37955331-37955171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:216-377
               
               
               Cow position:chr9:11209610-11209440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 95

               
               
               Conread position:216-388
               
               
               Cow position:chr9:52998535-52998364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:145
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:216-392
               
               
               Cow position:chr9:1712865-1712686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):72, 88

               
               
               Conread position:216-398
               
               
               Cow position:chr9:44944630-44944452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:216-404
               
               
               Cow position:chr9:7101277-7101474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 79

               
               
               Conread position:216-414
               
               
               Cow position:chr9:22165874-22165671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:216-425
               
               
               Cow position:chr9:55529646-55529848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:216-427
               
               
               Cow position:chr9:64310936-64310725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:216-431
               
               
               Cow position:chr9:41964889-41964676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:216-465
               
               
               Cow position:chr9:5164142-5163894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:216-469
               
               
               Cow position:chr9:25400344-25400103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):224, 52

               
               
               Conread position:216-480
               
               
               Cow position:chr9:21387273-21387527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:216-491
               
               
               Cow position:chr9:38645506-38645227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):29, 137

               
               
               Conread position:216-493
               
               
               Cow position:chr9:33043697-33043412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:216-518
               
               
               Cow position:chr9:21080416-21080704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:216-521
               
               
               Cow position:chr9:3185972-3186273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:216-536
               
               
               Cow position:chr9:39211454-39211768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):136, 57

               
               
               Conread position:216-542
               
               
               Cow position:chr9:1756308-1755975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):79, 235

               
               
               Conread position:216-548
               
               
               Cow position:chr9:9815256-9815588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:216-559
               
               
               Cow position:chr9:10010655-10010988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 120

               
               
               Conread position:216-559
               
               
               Cow position:chr9:22443780-22443438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 65

               
               
               Conread position:216-559
               
               
               Cow position:chr9:34958209-34957871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:217-382
               
               
               Cow position:chr9:14357256-14357425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:217-410
               
               
               Cow position:chr9:48115527-48115716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:217-425
               
               
               Cow position:chr9:31514091-31513886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 142

               
               
               Conread position:217-435
               
               
               Cow position:chr9:5469713-5469930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 54

               
               
               Conread position:217-475
               
               
               Cow position:chr9:29195188-29194923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 229

               
               
               Conread position:217-501
               
               
               Cow position:chr9:29339468-29339199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:217-521
               
               
               Cow position:chr9:18216068-18215771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):71, 124

               
               
               Conread position:217-559
               
               
               Cow position:chr9:8546185-8546502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:217-559
               
               
               Cow position:chr9:38846497-38846169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 166

               
               
               Conread position:217-559
               
               
               Cow position:chr9:55288045-55287714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 152

               
               
               Conread position:217-559
               
               
               Cow position:chr9:56772905-56773263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 161

               
               
               Conread position:218-559
               
               
               Cow position:chr9:29185295-29184949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 254

               
               
               Conread position:219-372
               
               
               Cow position:chr9:44261654-44261506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:219-425
               
               
               Cow position:chr9:58369147-58368944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:219-463
               
               
               Cow position:chr9:24652245-24652499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:219-507
               
               
               Cow position:chr9:55438586-55438293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):225, 57

               
               
               Conread position:219-559
               
               
               Cow position:chr9:33120042-33119702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:222-419
               
               
               Cow position:chr9:20637224-20637419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:222-548
               
               
               Cow position:chr9:44834117-44833791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 102

               
               
               Conread position:222-559
               
               
               Cow position:chr9:23388831-23388494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 139

               
               
               Conread position:223-493
               
               
               Cow position:chr9:46930310-46930576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 9

               
               
               Conread position:226-435
               
               
               Cow position:chr9:59834825-59835022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):200, 51

               
               
               Conread position:228-487
               
               
               Cow position:chr9:41394795-41394537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):46, 205

               
               
               Conread position:231-559
               
               
               Cow position:chr9:64091544-64091868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:236-425
               
               
               Cow position:chr9:52258203-52258014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:240-548
               
               
               Cow position:chr9:41513504-41513797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):278, 48

               
               
               Conread position:240-557
               
               
               Cow position:chr9:56011370-56011675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):278, 44

               
               
               Conread position:241-377
               
               
               Cow position:chr9:54630181-54630315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:241-559
               
               
               Cow position:chr9:823827-824144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:243-559
               
               
               Cow position:chr9:17741071-17740764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 107

               
               
               Conread position:243-559
               
               
               Cow position:chr9:57897233-57896937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:250-467
               
               
               Cow position:chr9:44770323-44770106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:252-520
               
               
               Cow position:chr9:6596346-6596090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:252-558
               
               
               Cow position:chr9:9416517-9416220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:252-559
               
               
               Cow position:chr9:48107232-48106934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:252-559
               
               
               Cow position:chr9:51204600-51204904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 220

               
               
               Conread position:255-544
               
               
               Cow position:chr9:44832169-44831886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:256-420
               
               
               Cow position:chr9:1733229-1733392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:258-559
               
               
               Cow position:chr9:767266-766969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:258-559
               
               
               Cow position:chr9:4646437-4646144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):226, 36

               
               
               Conread position:258-559
               
               
               Cow position:chr9:61997714-61997415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:262-407
               
               
               Cow position:chr9:34065660-34065513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:262-512
               
               
               Cow position:chr9:39681230-39681476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:262-559
               
               
               Cow position:chr9:28354408-28354702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:262-559
               
               
               Cow position:chr9:33681549-33681868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:264-556
               
               
               Cow position:chr9:28947756-28948033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:264-559
               
               
               Cow position:chr9:10667132-10666844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:264-559
               
               
               Cow position:chr9:31079185-31078901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:265-487
               
               
               Cow position:chr9:26310404-26310620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:265-559
               
               
               Cow position:chr9:11068586-11068286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 126

               
               
               Conread position:267-559
               
               
               Cow position:chr9:34309925-34310214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):173, 21

               
               
               Conread position:268-555
               
               
               Cow position:chr9:7634167-7634453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:268-558
               
               
               Cow position:chr9:3738326-3738039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:269-396
               
               
               Cow position:chr9:46190039-46190166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:269-398
               
               
               Cow position:chr9:34079198-34079072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:269-414
               
               
               Cow position:chr9:24243826-24243679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:269-415
               
               
               Cow position:chr9:6293491-6293638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:269-417
               
               
               Cow position:chr9:54051669-54051819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:269-419
               
               
               Cow position:chr9:55354508-55354658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:129
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:269-424
               
               
               Cow position:chr9:16137445-16137290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:269-433
               
               
               Cow position:chr9:39758415-39758579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:269-489
               
               
               Cow position:chr9:46664722-46664935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:269-508
               
               
               Cow position:chr9:64064466-64064228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):175, 204

               
               
               Conread position:269-521
               
               
               Cow position:chr9:28686284-28686537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 60

               
               
               Conread position:269-521
               
               
               Cow position:chr9:35105891-35105645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:269-539
               
               
               Cow position:chr9:18342626-18342888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):18, 152

               
               
               Conread position:269-544
               
               
               Cow position:chr9:31814489-31814206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):97, 195

               
               
               Conread position:269-547
               
               
               Cow position:chr9:22696120-22696395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):251, 76

               
               
               Conread position:269-553
               
               
               Cow position:chr9:50543530-50543246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:269-554
               
               
               Cow position:chr9:1972845-1973121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):252, 93

               
               
               Conread position:269-555
               
               
               Cow position:chr9:37677793-37678067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):249, 16

               
               
               Conread position:269-557
               
               
               Cow position:chr9:9654412-9654130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:269-557
               
               
               Cow position:chr9:50139182-50139467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 136

               
               
               Conread position:269-558
               
               
               Cow position:chr9:1520842-1520551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:269-558
               
               
               Cow position:chr9:9406156-9405868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 179

               
               
               Conread position:269-559
               
               
               Cow position:chr9:3782267-3782544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):249, 56

               
               
               Conread position:269-559
               
               
               Cow position:chr9:4268085-4267800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:269-559
               
               
               Cow position:chr9:8562719-8563021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 98

               
               
               Conread position:269-559
               
               
               Cow position:chr9:18217202-18216920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:269-559
               
               
               Cow position:chr9:21888067-21888353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 122

               
               
               Conread position:269-559
               
               
               Cow position:chr9:36445517-36445807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:269-559
               
               
               Cow position:chr9:59386874-59386589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):18, 153

               
               
               Conread position:270-395
               
               
               Cow position:chr9:53045448-53045323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:270-465
               
               
               Cow position:chr9:43342229-43342419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:270-543
               
               
               Cow position:chr9:17310662-17310387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):253, 18

               
               
               Conread position:270-547
               
               
               Cow position:chr9:1938022-1938301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):62, 173

               
               
               Conread position:270-548
               
               
               Cow position:chr9:41957706-41957977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:270-553
               
               
               Cow position:chr9:9461756-9461477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):123, 51

               
               
               Conread position:270-559
               
               
               Cow position:chr9:8337925-8338210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:270-559
               
               
               Cow position:chr9:32817242-32816950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):170, 18

               
               
               Conread position:270-559
               
               
               Cow position:chr9:43870874-43871163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 11

               
               
               Conread position:270-559
               
               
               Cow position:chr9:54528411-54528695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 104

               
               
               Conread position:270-559
               
               
               Cow position:chr9:55084405-55084113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:270-559
               
               
               Cow position:chr9:60110150-60110422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:270-559
               
               
               Cow position:chr9:62668148-62668436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):157, 41

               
               
               Conread position:271-381
               
               
               Cow position:chr9:31345399-31345509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:271-425
               
               
               Cow position:chr9:19758620-19758772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:271-536
               
               
               Cow position:chr9:11304175-11303917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):246, 23

               
               
               Conread position:271-547
               
               
               Cow position:chr9:10309097-10308836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):247, 81

               
               
               Conread position:271-547
               
               
               Cow position:chr9:33237292-33237564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:271-558
               
               
               Cow position:chr9:11319735-11319451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:271-559
               
               
               Cow position:chr9:44467441-44467169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:271-559
               
               
               Cow position:chr9:64559983-64559697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):246, 101

               
               
               Conread position:272-559
               
               
               Cow position:chr9:64155949-64155676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):205, 12

               
               
               Conread position:274-388
               
               
               Cow position:chr9:23403720-23403834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:274-396
               
               
               Cow position:chr9:26277733-26277852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:274-467
               
               
               Cow position:chr9:53751056-53750863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:274-558
               
               
               Cow position:chr9:11313612-11313327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:274-559
               
               
               Cow position:chr9:8534796-8534501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 153

               
               
               Conread position:274-559
               
               
               Cow position:chr9:17411291-17410996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):221, 158

               
               
               Conread position:274-559
               
               
               Cow position:chr9:62399866-62400134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):140, 26

               
               
               Conread position:275-486
               
               
               Cow position:chr9:28378871-28379080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):199, 106

               
               
               Conread position:275-548
               
               
               Cow position:chr9:5509632-5509894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:275-559
               
               
               Cow position:chr9:47906376-47906096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):80, 43

               
               
               Conread position:277-469
               
               
               Cow position:chr9:23797140-23797330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 153

               
               
               Conread position:277-491
               
               
               Cow position:chr9:52598816-52598608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:277-521
               
               
               Cow position:chr9:42478577-42478323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:277-543
               
               
               Cow position:chr9:5594407-5594668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:277-548
               
               
               Cow position:chr9:17518584-17518316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 142

               
               
               Conread position:277-548
               
               
               Cow position:chr9:62442195-62442463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):245, 74

               
               
               Conread position:277-558
               
               
               Cow position:chr9:30652804-30652526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):149, 75

               
               
               Conread position:277-559
               
               
               Cow position:chr9:19493561-19493279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:277-559
               
               
               Cow position:chr9:64050656-64050372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):245, 137

               
               
               Conread position:278-417
               
               
               Cow position:chr9:61547608-61547743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:278-540
               
               
               Cow position:chr9:49293237-49292981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:278-559
               
               
               Cow position:chr9:42446078-42445798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 170

               
               
               Conread position:278-559
               
               
               Cow position:chr9:50081134-50080862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):240, 149

               
               
               Conread position:278-560
               
               
               Cow position:chr9:40542042-40542304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):243, 42

               
               
               Conread position:279-521
               
               
               Cow position:chr9:52839972-52839741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:280-489
               
               
               Cow position:chr9:23788347-23788551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:280-535
               
               
               Cow position:chr9:5219264-5219009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 159

               
               
               Conread position:280-559
               
               
               Cow position:chr9:55075221-55074946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:281-483
               
               
               Cow position:chr9:28754728-28754927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:282-475
               
               
               Cow position:chr9:54615390-54615202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):163, 75

               
               
               Conread position:283-532
               
               
               Cow position:chr9:5077794-5077564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:283-559
               
               
               Cow position:chr9:14796859-14796589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):227, 139

               
               
               Conread position:283-559
               
               
               Cow position:chr9:19713991-19714257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):236, 146

               
               
               Conread position:284-414
               
               
               Cow position:chr9:34014337-34014207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:284-424
               
               
               Cow position:chr9:30780030-30780168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:284-438
               
               
               Cow position:chr9:52828568-52828723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:284-496
               
               
               Cow position:chr9:3343661-3343863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:284-548
               
               
               Cow position:chr9:43443716-43443969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:284-548
               
               
               Cow position:chr9:63745727-63745986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):234, 90

               
               
               Conread position:284-559
               
               
               Cow position:chr9:5245765-5246039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):100, 206

               
               
               Conread position:284-559
               
               
               Cow position:chr9:38961516-38961250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:284-559
               
               
               Cow position:chr9:45756276-45756540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):143, 32

               
               
               Conread position:285-397
               
               
               Cow position:chr9:49830758-49830869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:285-404
               
               
               Cow position:chr9:35793590-35793709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:285-444
               
               
               Cow position:chr9:31098972-31098815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 9

               
               
               Conread position:285-474
               
               
               Cow position:chr9:9625097-9624912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):134, 48

               
               
               Conread position:285-517
               
               
               Cow position:chr9:10819915-10819691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:285-521
               
               
               Cow position:chr9:29684058-29684293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):130, 15

               
               
               Conread position:285-559
               
               
               Cow position:chr9:34468665-34468401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):28, 11

               
               
               Conread position:285-559
               
               
               Cow position:chr9:62357616-62357345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:286-435
               
               
               Cow position:chr9:62908107-62907958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 78

               
               
               Conread position:286-557
               
               
               Cow position:chr9:63194521-63194787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):238, 133

               
               
               Conread position:286-559
               
               
               Cow position:chr9:5763716-5763450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:287-538
               
               
               Cow position:chr9:3774080-3774327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):229, 67

               
               
               Conread position:288-388
               
               
               Cow position:chr9:50505130-50505030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:288-394
               
               
               Cow position:chr9:8706283-8706390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:288-511
               
               
               Cow position:chr9:5399051-5399273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 152

               
               
               Conread position:288-544
               
               
               Cow position:chr9:25921739-25921996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:288-548
               
               
               Cow position:chr9:4580488-4580244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:288-559
               
               
               Cow position:chr9:5209499-5209764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:288-559
               
               
               Cow position:chr9:37069643-37069385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 115

               
               
               Conread position:288-559
               
               
               Cow position:chr9:62656719-62656980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):66, 142

               
               
               Conread position:288-560
               
               
               Cow position:chr9:15951240-15950974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:290-535
               
               
               Cow position:chr9:58670661-58670887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:290-559
               
               
               Cow position:chr9:23042696-23042960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):133, 93

               
               
               Conread position:290-559
               
               
               Cow position:chr9:32371833-32371577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:291-559
               
               
               Cow position:chr9:55889734-55889991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):211, 13

               
               
               Conread position:292-559
               
               
               Cow position:chr9:49416907-49417171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):119, 109

               
               
               Conread position:293-425
               
               
               Cow position:chr9:6685820-6685952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:294-483
               
               
               Cow position:chr9:32982153-32981964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:294-548
               
               
               Cow position:chr9:60027119-60027370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 145

               
               
               Conread position:296-483
               
               
               Cow position:chr9:55532738-55532922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:296-537
               
               
               Cow position:chr9:3220060-3220300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):222, 133

               
               
               Conread position:296-559
               
               
               Cow position:chr9:6879703-6879950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):136, 77

               
               
               Conread position:296-559
               
               
               Cow position:chr9:7362952-7363209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):227, 68

               
               
               Conread position:298-411
               
               
               Cow position:chr9:54932969-54932855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:299-435
               
               
               Cow position:chr9:56204737-56204869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:299-558
               
               
               Cow position:chr9:23431220-23430963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:300-559
               
               
               Cow position:chr9:24872764-24873012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:302-558
               
               
               Cow position:chr9:46242327-46242081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 45

               
               
               Conread position:302-559
               
               
               Cow position:chr9:32624938-32625188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:302-559
               
               
               Cow position:chr9:39577669-39577918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):215, 38

               
               
               Conread position:303-485
               
               
               Cow position:chr9:40776729-40776907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:303-559
               
               
               Cow position:chr9:11363828-11364075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:305-556
               
               
               Cow position:chr9:44921467-44921210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):42, 148

               
               
               Conread position:306-516
               
               
               Cow position:chr9:41486308-41486100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:307-424
               
               
               Cow position:chr9:38799551-38799434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:307-558
               
               
               Cow position:chr9:18110928-18110682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):120, 9

               
               
               Conread position:308-527
               
               
               Cow position:chr9:43936881-43937091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:314-548
               
               
               Cow position:chr9:17928699-17928932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:314-558
               
               
               Cow position:chr9:24997575-24997339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:314-559
               
               
               Cow position:chr9:5141014-5141264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:314-559
               
               
               Cow position:chr9:9823564-9823322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):130, 81

               
               
               Conread position:314-559
               
               
               Cow position:chr9:44108891-44108647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 26

               
               
               Conread position:314-559
               
               
               Cow position:chr9:54924562-54924806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:315-559
               
               
               Cow position:chr9:16745617-16745860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):125, 9

               
               
               Conread position:316-559
               
               
               Cow position:chr9:6089033-6089282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:319-548
               
               
               Cow position:chr9:35904798-35904573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:319-557
               
               
               Cow position:chr9:43875772-43875540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 133

               
               
               Conread position:321-559
               
               
               Cow position:chr9:22114686-22114447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):222, 63

               
               
               Conread position:321-559
               
               
               Cow position:chr9:35375375-35375608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):197, 31

               
               
               Conread position:324-543
               
               
               Cow position:chr9:20896850-20897069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:335-556
               
               
               Cow position:chr9:27029742-27029523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):186, 89

               
               
               Conread position:335-559
               
               
               Cow position:chr9:35849867-35850083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:336-559
               
               
               Cow position:chr9:34106681-34106906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):51, 86

               
               
               Conread position:337-558
               
               
               Cow position:chr9:3931926-3932146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):169, 17

               
               
               Conread position:342-556
               
               
               Cow position:chr9:38343860-38344071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:343-559
               
               
               Cow position:chr9:36827106-36827314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:344-559
               
               
               Cow position:chr9:6225482-6225268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:345-546
               
               
               Cow position:chr9:34742751-34742558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:345-548
               
               
               Cow position:chr9:35533980-35533777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):169, 74

               
               
               Conread position:348-559
               
               
               Cow position:chr9:1952294-1952085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:351-559
               
               
               Cow position:chr9:22360989-22361195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 154

               
               
               Conread position:357-559
               
               
               Cow position:chr9:33038476-33038278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):145, 33

               
               
               Conread position:359-559
               
               
               Cow position:chr9:31588116-31587915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:372-559
               
               
               Cow position:chr9:30195214-30195393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:374-556
               
               
               Cow position:chr9:31270782-31270960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:378-558
               
               
               Cow position:chr9:26390775-26390951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):149, 21

               
               
               Conread position:379-559
               
               
               Cow position:chr9:20811058-20810881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):107, 59

               
               
               Conread position:381-547
               
               
               Cow position:chr9:1712467-1712305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:384-559
               
               
               Cow position:chr9:21840084-21840259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:386-559
               
               
               Cow position:chr9:58734382-58734554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):137, 41

               
               
               Conread position:386-559
               
               
               Cow position:chr9:59507103-59507271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):158, 95

               
               
               Conread position:390-547
               
               
               Cow position:chr9:4324139-4323986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:390-559
               
               
               Cow position:chr9:5238414-5238576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:395-559
               
               
               Cow position:chr9:49279487-49279658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:397-559
               
               
               Cow position:chr9:50667446-50667608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:403-555
               
               
               Cow position:chr9:49403790-49403933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:403-559
               
               
               Cow position:chr9:14358194-14358346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):115, 17

               
               
               Conread position:403-559
               
               
               Cow position:chr9:60037681-60037837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:405-558
               
               
               Cow position:chr9:4928658-4928810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:411-559
               
               
               Cow position:chr9:41652825-41652969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:415-544
               
               
               Cow position:chr9:32829967-32829840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:421-559
               
               
               Cow position:chr9:37528497-37528637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:426-559
               
               
               Cow position:chr9:31292740-31292872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:433-556
               
               
               Cow position:chr9:32812400-32812525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:438-559
               
               
               Cow position:chr9:53608332-53608211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:453-559
               
               
               Cow position:chr9:22440432-22440329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):72, 0
Show alignments to all cow chromosomes.