Cow genome map
| Conread name: | Ss1.1-rski0137_h16.5 |
| Conread position: | 622-807 |
| Cow position: | chr16:33198420-33198233 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 628-806 |
| Cow position: | chr16:8738090-8738266 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 628-807 |
| Cow position: | chr16:45122060-45122242 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 642-807 |
| Cow position: | chr16:8493952-8493789 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 67, 89 |
| Conread position: | 642-807 |
| Cow position: | chr16:38244581-38244418 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 642-814 |
| Cow position: | chr16:10011814-10011641 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 644-807 |
| Cow position: | chr16:3304064-3304236 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 118 |
| Conread position: | 644-809 |
| Cow position: | chr16:12458043-12457881 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 645-793 |
| Cow position: | chr16:31241252-31241106 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 645-797 |
| Cow position: | chr16:29037957-29038107 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 645-800 |
| Cow position: | chr16:15949466-15949315 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 645-803 |
| Cow position: | chr16:31011369-31011524 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-803 |
| Cow position: | chr16:42977509-42977670 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 645-803 |
| Cow position: | chr16:49174326-49174492 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 645-804 |
| Cow position: | chr16:7665679-7665837 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 91 |
| Conread position: | 645-805 |
| Cow position: | chr16:7442059-7441902 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 31 |
| Conread position: | 645-806 |
| Cow position: | chr16:21370148-21369991 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 129 |
| Conread position: | 645-807 |
| Cow position: | chr16:3049112-3048952 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-807 |
| Cow position: | chr16:4277512-4277352 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 645-807 |
| Cow position: | chr16:7928343-7928182 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 645-807 |
| Cow position: | chr16:9097065-9097226 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 61, 92 |
| Conread position: | 645-807 |
| Cow position: | chr16:11584363-11584207 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 69 |
| Conread position: | 645-807 |
| Cow position: | chr16:12220723-12220886 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 58, 93 |
| Conread position: | 645-807 |
| Cow position: | chr16:18048113-18047952 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 645-807 |
| Cow position: | chr16:20614540-20614696 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 645-807 |
| Cow position: | chr16:28444448-28444287 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 91 |
| Conread position: | 645-807 |
| Cow position: | chr16:43308519-43308365 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 645-807 |
| Cow position: | chr16:44138451-44138291 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-810 |
| Cow position: | chr16:15407517-15407353 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 645-811 |
| Cow position: | chr16:16597599-16597763 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-811 |
| Cow position: | chr16:17745878-17746048 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 140 |
| Conread position: | 645-811 |
| Cow position: | chr16:56082323-56082158 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 645-814 |
| Cow position: | chr16:2223355-2223187 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 92 |
| Conread position: | 645-814 |
| Cow position: | chr16:3047298-3047136 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 126, 53 |
| Conread position: | 645-814 |
| Cow position: | chr16:4275698-4275536 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 126, 53 |
| Conread position: | 645-814 |
| Cow position: | chr16:5382223-5382393 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 645-814 |
| Cow position: | chr16:10032904-10033072 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 645-814 |
| Cow position: | chr16:27327083-27326915 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 645-814 |
| Cow position: | chr16:33290426-33290594 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-814 |
| Cow position: | chr16:33302226-33302392 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 645-814 |
| Cow position: | chr16:46548227-46548055 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 645-814 |
| Cow position: | chr16:47820609-47820781 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-814 |
| Cow position: | chr16:52325557-52325389 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-814 |
| Cow position: | chr16:56595348-56595181 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 62, 69 |
| Conread position: | 645-816 |
| Cow position: | chr16:4857060-4856890 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 645-816 |
| Cow position: | chr16:29311565-29311737 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 646-807 |
| Cow position: | chr16:15714152-15714312 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 59, 87 |
| Conread position: | 646-814 |
| Cow position: | chr16:38663667-38663501 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 646-814 |
| Cow position: | chr16:40029841-40029678 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 647-810 |
| Cow position: | chr16:17617319-17617158 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 647-810 |
| Cow position: | chr16:21442567-21442406 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 647-810 |
| Cow position: | chr16:40446305-40446471 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 647-810 |
| Cow position: | chr16:47274683-47274521 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 90 |
| Conread position: | 647-811 |
| Cow position: | chr16:9987024-9986852 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 647-814 |
| Cow position: | chr16:24672819-24672653 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 647-814 |
| Cow position: | chr16:44144432-44144598 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 89 |
| Conread position: | 648-793 |
| Cow position: | chr16:12320266-12320409 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 648-803 |
| Cow position: | chr16:45193764-45193612 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 648-807 |
| Cow position: | chr16:8068779-8068616 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 648-807 |
| Cow position: | chr16:12324500-12324654 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 648-807 |
| Cow position: | chr16:31149423-31149575 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 648-811 |
| Cow position: | chr16:11134936-11134781 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 648-811 |
| Cow position: | chr16:13306827-13306667 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 648-814 |
| Cow position: | chr16:8953638-8953466 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 648-814 |
| Cow position: | chr16:31484616-31484460 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 648-814 |
| Cow position: | chr16:56912643-56912480 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 90 |
| Conread position: | 649-803 |
| Cow position: | chr16:23681408-23681557 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 49, 68 |
| Conread position: | 649-806 |
| Cow position: | chr16:51393345-51393188 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 649-807 |
| Cow position: | chr16:27117350-27117507 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 649-814 |
| Cow position: | chr16:56615457-56615295 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 652-814 |
| Cow position: | chr16:46433276-46433117 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 653-793 |
| Cow position: | chr16:33646065-33646201 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 653-814 |
| Cow position: | chr16:16232106-16232266 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 655-807 |
| Cow position: | chr16:2751026-2751174 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 655-814 |
| Cow position: | chr16:15824391-15824234 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 655-814 |
| Cow position: | chr16:26842798-26842957 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 41, 31 |
Show alignments to all cow chromosomes.