Cow genome map
| Conread name: | Ss1.1-rski0137_h16.5 |
| Conread position: | 621-807 |
| Cow position: | chr17:21718939-21718757 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 85, 94 |
| Conread position: | 622-802 |
| Cow position: | chr17:32989535-32989708 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 77, 91 |
| Conread position: | 622-802 |
| Cow position: | chr17:32993565-32993392 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 77, 91 |
| Conread position: | 622-807 |
| Cow position: | chr17:9824728-9824907 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 92 |
| Conread position: | 622-807 |
| Cow position: | chr17:20022455-20022274 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 622-807 |
| Cow position: | chr17:24824301-24824486 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 110 |
| Conread position: | 622-807 |
| Cow position: | chr17:32333032-32332852 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 77, 101 |
| Conread position: | 622-813 |
| Cow position: | chr17:21325391-21325589 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 195 |
| Conread position: | 622-814 |
| Cow position: | chr17:17035008-17035192 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 642-807 |
| Cow position: | chr17:18201836-18202001 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 642-807 |
| Cow position: | chr17:24841774-24841937 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 96 |
| Conread position: | 642-814 |
| Cow position: | chr17:25117963-25118134 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 99 |
| Conread position: | 644-791 |
| Cow position: | chr17:5012995-5012844 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 645-796 |
| Cow position: | chr17:3387799-3387948 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 645-797 |
| Cow position: | chr17:32138342-32138186 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-803 |
| Cow position: | chr17:20992960-20992802 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 66 |
| Conread position: | 645-806 |
| Cow position: | chr17:9078139-9077974 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-807 |
| Cow position: | chr17:5898445-5898284 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 77 |
| Conread position: | 645-807 |
| Cow position: | chr17:7810673-7810506 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-807 |
| Cow position: | chr17:8663586-8663747 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 645-807 |
| Cow position: | chr17:12289327-12289170 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 56, 82 |
| Conread position: | 645-807 |
| Cow position: | chr17:20884605-20884765 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 93 |
| Conread position: | 645-807 |
| Cow position: | chr17:20929323-20929484 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 645-807 |
| Cow position: | chr17:21003747-21003591 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 38 |
| Conread position: | 645-807 |
| Cow position: | chr17:21039639-21039796 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-807 |
| Cow position: | chr17:25473198-25473041 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 53, 69 |
| Conread position: | 645-807 |
| Cow position: | chr17:25702683-25702844 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 645-807 |
| Cow position: | chr17:26183426-26183587 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 645-807 |
| Cow position: | chr17:26225109-26225268 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-807 |
| Cow position: | chr17:32419034-32418877 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-808 |
| Cow position: | chr17:17044250-17044093 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 158, 68 |
| Conread position: | 645-810 |
| Cow position: | chr17:15303894-15303730 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 645-810 |
| Cow position: | chr17:39963959-39964121 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 645-811 |
| Cow position: | chr17:4817609-4817774 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 645-811 |
| Cow position: | chr17:9260530-9260367 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-811 |
| Cow position: | chr17:20359194-20359357 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 68 |
| Conread position: | 645-811 |
| Cow position: | chr17:24559372-24559537 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 645-812 |
| Cow position: | chr17:15883753-15883920 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 92 |
| Conread position: | 645-814 |
| Cow position: | chr17:3467834-3467998 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 645-814 |
| Cow position: | chr17:6761766-6761607 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 645-814 |
| Cow position: | chr17:6767179-6767011 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 56, 68 |
| Conread position: | 645-814 |
| Cow position: | chr17:7571185-7571355 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 645-814 |
| Cow position: | chr17:9509914-9509745 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 157, 69 |
| Conread position: | 645-814 |
| Cow position: | chr17:11618666-11618835 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 161, 74 |
| Conread position: | 645-814 |
| Cow position: | chr17:11921083-11920916 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 81 |
| Conread position: | 645-814 |
| Cow position: | chr17:19544150-19543985 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 645-814 |
| Cow position: | chr17:21236604-21236772 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 645-814 |
| Cow position: | chr17:26231036-26231212 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-814 |
| Cow position: | chr17:27795736-27795903 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 38 |
| Conread position: | 645-814 |
| Cow position: | chr17:36814443-36814612 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 646-803 |
| Cow position: | chr17:40741735-40741890 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 646-805 |
| Cow position: | chr17:6787019-6787178 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 647-810 |
| Cow position: | chr17:36468107-36467945 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 647-816 |
| Cow position: | chr17:17222424-17222592 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 647-816 |
| Cow position: | chr17:25342657-25342491 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 648-807 |
| Cow position: | chr17:3153489-3153328 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 648-807 |
| Cow position: | chr17:10016364-10016517 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 648-807 |
| Cow position: | chr17:24895158-24895317 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 129 |
| Conread position: | 648-811 |
| Cow position: | chr17:11397751-11397911 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 648-813 |
| Cow position: | chr17:1081289-1081454 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 649-814 |
| Cow position: | chr17:21466177-21466011 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 650-805 |
| Cow position: | chr17:15334409-15334255 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 652-814 |
| Cow position: | chr17:35051703-35051866 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 77 |
| Conread position: | 653-807 |
| Cow position: | chr17:22241094-22241248 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 86, 65 |
| Conread position: | 660-807 |
| Cow position: | chr17:24116706-24116854 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.