Cow genome map
| Conread name: | Ss1.1-rski0137_h16.5 |
| Conread position: | 1-613 |
| Cow position: | chr18:24710393-24709780 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 490, 0 |
| Conread position: | 231-352 |
| Cow position: | chr18:41921849-41921970 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 622-807 |
| Cow position: | chr18:43283771-43283590 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 73 |
| Conread position: | 629-807 |
| Cow position: | chr18:33896426-33896248 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 148 |
| Conread position: | 642-804 |
| Cow position: | chr18:54572285-54572125 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 83 |
| Conread position: | 642-810 |
| Cow position: | chr18:35795217-35795051 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 642-814 |
| Cow position: | chr18:31557155-31556985 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 644-795 |
| Cow position: | chr18:37382086-37381937 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 644-807 |
| Cow position: | chr18:4556162-4555998 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 93 |
| Conread position: | 645-801 |
| Cow position: | chr18:3098024-3097865 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 645-803 |
| Cow position: | chr18:9365929-9366084 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 90 |
| Conread position: | 645-803 |
| Cow position: | chr18:39662787-39662943 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 54 |
| Conread position: | 645-805 |
| Cow position: | chr18:37187989-37187830 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 645-806 |
| Cow position: | chr18:52649339-52649174 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 645-807 |
| Cow position: | chr18:1954581-1954414 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 65 |
| Conread position: | 645-807 |
| Cow position: | chr18:5189685-5189525 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 68 |
| Conread position: | 645-807 |
| Cow position: | chr18:16659424-16659262 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 645-807 |
| Cow position: | chr18:22569058-22568902 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-807 |
| Cow position: | chr18:34444728-34444571 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 645-807 |
| Cow position: | chr18:38937829-38937986 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 645-807 |
| Cow position: | chr18:44514094-44514256 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 645-807 |
| Cow position: | chr18:50004697-50004540 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 53, 69 |
| Conread position: | 645-807 |
| Cow position: | chr18:50632434-50632279 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 645-810 |
| Cow position: | chr18:21751386-21751549 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 645-811 |
| Cow position: | chr18:238108-237943 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 91 |
| Conread position: | 645-811 |
| Cow position: | chr18:41702842-41703004 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-811 |
| Cow position: | chr18:42427628-42427786 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 645-814 |
| Cow position: | chr18:3709238-3709404 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 49 |
| Conread position: | 645-814 |
| Cow position: | chr18:4485607-4485770 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 645-814 |
| Cow position: | chr18:8208417-8208250 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 645-814 |
| Cow position: | chr18:22045405-22045238 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 645-814 |
| Cow position: | chr18:22790080-22789917 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 645-814 |
| Cow position: | chr18:38379918-38380089 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 645-814 |
| Cow position: | chr18:47175373-47175205 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 645-814 |
| Cow position: | chr18:51643357-51643197 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 645-814 |
| Cow position: | chr18:52251849-52251681 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-816 |
| Cow position: | chr18:50276235-50276067 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 646-802 |
| Cow position: | chr18:51757103-51757254 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 646-814 |
| Cow position: | chr18:39623809-39623977 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 647-807 |
| Cow position: | chr18:14871594-14871438 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 647-807 |
| Cow position: | chr18:42479576-42479414 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 80, 63 |
| Conread position: | 647-810 |
| Cow position: | chr18:29371877-29372039 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 647-810 |
| Cow position: | chr18:49970643-49970482 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 647-814 |
| Cow position: | chr18:46276292-46276126 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 648-807 |
| Cow position: | chr18:4489897-4489735 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 648-807 |
| Cow position: | chr18:49440852-49441009 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 648-807 |
| Cow position: | chr18:49603032-49602876 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 649-796 |
| Cow position: | chr18:44548734-44548591 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 652-811 |
| Cow position: | chr18:30676644-30676482 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 47 |
| Conread position: | 654-810 |
| Cow position: | chr18:37690167-37690320 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 657-807 |
| Cow position: | chr18:17390974-17390824 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 86, 53 |
| Conread position: | 660-814 |
| Cow position: | chr18:7487255-7487408 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 53 |
Show alignments to all cow chromosomes.