Cow genome map
| Conread name: | Ss1.1-rski0137_h16.5 |
| Conread position: | 622-803 |
| Cow position: | chr4:3421633-3421811 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 99 |
| Conread position: | 622-803 |
| Cow position: | chr4:38209964-38209788 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 622-805 |
| Cow position: | chr4:41907571-41907393 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 77, 92 |
| Conread position: | 622-807 |
| Cow position: | chr4:20147194-20147376 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 77, 114 |
| Conread position: | 622-807 |
| Cow position: | chr4:68456909-68456725 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 32 |
| Conread position: | 622-814 |
| Cow position: | chr4:50494782-50494977 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 622-815 |
| Cow position: | chr4:23847040-23846856 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 623-793 |
| Cow position: | chr4:21531631-21531463 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 623-816 |
| Cow position: | chr4:46435336-46435534 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 626-807 |
| Cow position: | chr4:62794349-62794165 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 111, 93 |
| Conread position: | 628-805 |
| Cow position: | chr4:37915319-37915149 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 628-814 |
| Cow position: | chr4:8182620-8182437 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 147, 82 |
| Conread position: | 638-803 |
| Cow position: | chr4:63293485-63293645 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 63 |
| Conread position: | 642-811 |
| Cow position: | chr4:617350-617182 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 644-807 |
| Cow position: | chr4:30943987-30944145 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 62, 73 |
| Conread position: | 644-814 |
| Cow position: | chr4:47230965-47230799 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 644-814 |
| Cow position: | chr4:47283980-47283814 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 644-814 |
| Cow position: | chr4:53050025-53050193 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 645-796 |
| Cow position: | chr4:44773009-44772859 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 645-796 |
| Cow position: | chr4:50837735-50837883 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 645-803 |
| Cow position: | chr4:13222153-13221993 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 57, 111 |
| Conread position: | 645-803 |
| Cow position: | chr4:19102848-19102689 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-803 |
| Cow position: | chr4:38940909-38940755 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 645-805 |
| Cow position: | chr4:19708973-19709132 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 645-807 |
| Cow position: | chr4:1646058-1645892 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 645-807 |
| Cow position: | chr4:10558570-10558727 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 645-807 |
| Cow position: | chr4:19584737-19584905 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-807 |
| Cow position: | chr4:23271316-23271475 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 645-807 |
| Cow position: | chr4:26659333-26659491 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 645-807 |
| Cow position: | chr4:37732449-37732288 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 76 |
| Conread position: | 645-807 |
| Cow position: | chr4:46656163-46656325 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 53, 68 |
| Conread position: | 645-807 |
| Cow position: | chr4:51617965-51617805 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 645-807 |
| Cow position: | chr4:60527214-60527372 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 645-807 |
| Cow position: | chr4:65173136-65173293 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 645-807 |
| Cow position: | chr4:67393125-67393286 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 645-810 |
| Cow position: | chr4:5790676-5790840 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-811 |
| Cow position: | chr4:26959935-26959771 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 645-813 |
| Cow position: | chr4:45874432-45874266 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 645-814 |
| Cow position: | chr4:1985681-1985849 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 91 |
| Conread position: | 645-814 |
| Cow position: | chr4:5250221-5250389 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 59, 91 |
| Conread position: | 645-814 |
| Cow position: | chr4:10915802-10915632 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 162, 116 |
| Conread position: | 645-814 |
| Cow position: | chr4:11185997-11186166 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-814 |
| Cow position: | chr4:19431662-19431493 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 110 |
| Conread position: | 645-814 |
| Cow position: | chr4:19573318-19573487 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 50, 92 |
| Conread position: | 645-814 |
| Cow position: | chr4:25802724-25802892 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 645-814 |
| Cow position: | chr4:27521586-27521758 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 645-814 |
| Cow position: | chr4:28660517-28660348 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 86 |
| Conread position: | 645-814 |
| Cow position: | chr4:37991623-37991789 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 160, 60 |
| Conread position: | 645-814 |
| Cow position: | chr4:38949503-38949330 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 645-814 |
| Cow position: | chr4:39010083-39010251 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 85, 67 |
| Conread position: | 645-814 |
| Cow position: | chr4:45483832-45484001 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 68, 81 |
| Conread position: | 645-814 |
| Cow position: | chr4:61451247-61451415 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 97 |
| Conread position: | 645-816 |
| Cow position: | chr4:29318042-29317868 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 59, 140 |
| Conread position: | 645-816 |
| Cow position: | chr4:38946249-38946418 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 646-803 |
| Cow position: | chr4:19496529-19496687 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 646-814 |
| Cow position: | chr4:23807984-23808157 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 647-805 |
| Cow position: | chr4:27699067-27699229 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 133 |
| Conread position: | 647-807 |
| Cow position: | chr4:22138186-22138025 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 87 |
| Conread position: | 647-810 |
| Cow position: | chr4:31177860-31178016 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 647-810 |
| Cow position: | chr4:47305113-47305275 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 58, 89 |
| Conread position: | 647-810 |
| Cow position: | chr4:68076502-68076345 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 647-811 |
| Cow position: | chr4:7043784-7043622 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 647-814 |
| Cow position: | chr4:49808553-49808716 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 647-814 |
| Cow position: | chr4:56746025-56746192 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 648-803 |
| Cow position: | chr4:28854238-28854089 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 648-805 |
| Cow position: | chr4:17186314-17186159 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 648-806 |
| Cow position: | chr4:3853512-3853669 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 648-807 |
| Cow position: | chr4:17051249-17051093 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 648-807 |
| Cow position: | chr4:59002103-59001947 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 648-814 |
| Cow position: | chr4:56852884-56853050 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 130 |
| Conread position: | 649-807 |
| Cow position: | chr4:56395550-56395707 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 65 |
| Conread position: | 649-816 |
| Cow position: | chr4:6073017-6072852 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 652-810 |
| Cow position: | chr4:19238258-19238412 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 653-802 |
| Cow position: | chr4:19700137-19700293 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 655-812 |
| Cow position: | chr4:42608782-42608935 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 59 |
Show alignments to all cow chromosomes.