Cow genome map
| Conread name: | Ss1.1-rski0137_h16.5 |
| Conread position: | 622-805 |
| Cow position: | chr5:14920886-14920702 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 84, 106 |
| Conread position: | 622-806 |
| Cow position: | chr5:19278662-19278478 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 622-807 |
| Cow position: | chr5:45845647-45845464 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 61, 76 |
| Conread position: | 622-811 |
| Cow position: | chr5:30253785-30253970 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 92 |
| Conread position: | 623-806 |
| Cow position: | chr5:20288218-20288033 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 628-807 |
| Cow position: | chr5:26549090-26548917 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 78, 84 |
| Conread position: | 643-807 |
| Cow position: | chr5:11668119-11667958 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 65, 7 |
| Conread position: | 644-793 |
| Cow position: | chr5:53980688-53980540 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 645-792 |
| Cow position: | chr5:60016232-60016375 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 645-802 |
| Cow position: | chr5:72045610-72045456 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 645-803 |
| Cow position: | chr5:29828114-29828270 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 645-803 |
| Cow position: | chr5:49821495-49821653 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 92 |
| Conread position: | 645-804 |
| Cow position: | chr5:4280515-4280667 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-804 |
| Cow position: | chr5:48062050-48061885 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 645-805 |
| Cow position: | chr5:51053582-51053424 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 645-806 |
| Cow position: | chr5:3771913-3772067 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-806 |
| Cow position: | chr5:35235622-35235462 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 645-806 |
| Cow position: | chr5:57447599-57447439 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 88 |
| Conread position: | 645-807 |
| Cow position: | chr5:7057334-7057171 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 15 |
| Conread position: | 645-807 |
| Cow position: | chr5:14550517-14550356 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 92 |
| Conread position: | 645-807 |
| Cow position: | chr5:24915460-24915299 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 645-807 |
| Cow position: | chr5:26149101-26149261 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 60, 91 |
| Conread position: | 645-807 |
| Cow position: | chr5:34288186-34288028 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 66 |
| Conread position: | 645-807 |
| Cow position: | chr5:34347667-34347507 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 645-807 |
| Cow position: | chr5:34918413-34918569 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 645-807 |
| Cow position: | chr5:43611765-43611925 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 645-807 |
| Cow position: | chr5:51298646-51298489 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 645-807 |
| Cow position: | chr5:52165110-52164947 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 645-811 |
| Cow position: | chr5:7012783-7012619 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 645-811 |
| Cow position: | chr5:12901984-12902149 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 645-811 |
| Cow position: | chr5:17104917-17105075 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 645-811 |
| Cow position: | chr5:19561381-19561216 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 645-811 |
| Cow position: | chr5:30492727-30492560 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 92 |
| Conread position: | 645-811 |
| Cow position: | chr5:55756351-55756183 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 96 |
| Conread position: | 645-811 |
| Cow position: | chr5:55949612-55949448 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 645-811 |
| Cow position: | chr5:74065450-74065290 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 645-813 |
| Cow position: | chr5:46540989-46540828 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 55, 82 |
| Conread position: | 645-814 |
| Cow position: | chr5:30232975-30233142 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 61, 38 |
| Conread position: | 645-814 |
| Cow position: | chr5:31527328-31527160 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 81 |
| Conread position: | 645-814 |
| Cow position: | chr5:33834109-33834273 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 645-814 |
| Cow position: | chr5:39937182-39937348 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 645-814 |
| Cow position: | chr5:51012066-51012233 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 645-814 |
| Cow position: | chr5:52853038-52853199 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 645-814 |
| Cow position: | chr5:57497357-57497193 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 645-814 |
| Cow position: | chr5:60514961-60514792 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 645-816 |
| Cow position: | chr5:21828935-21829097 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 645-816 |
| Cow position: | chr5:25035191-25035019 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 645-816 |
| Cow position: | chr5:61914631-61914806 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 646-807 |
| Cow position: | chr5:55783895-55783735 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 646-807 |
| Cow position: | chr5:59662990-59662831 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 91 |
| Conread position: | 646-810 |
| Cow position: | chr5:43604207-43604368 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 646-814 |
| Cow position: | chr5:62996025-62996192 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 60, 68 |
| Conread position: | 647-807 |
| Cow position: | chr5:35969601-35969766 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 647-814 |
| Cow position: | chr5:32394668-32394835 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 81 |
| Conread position: | 647-814 |
| Cow position: | chr5:33273762-33273931 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 647-814 |
| Cow position: | chr5:42064274-42064439 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 648-802 |
| Cow position: | chr5:22667141-22667291 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 72 |
| Conread position: | 648-803 |
| Cow position: | chr5:69383325-69383473 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 648-807 |
| Cow position: | chr5:2240921-2240763 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 89 |
| Conread position: | 648-807 |
| Cow position: | chr5:32975828-32975989 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 131 |
| Conread position: | 648-807 |
| Cow position: | chr5:65941180-65941024 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 123, 68 |
| Conread position: | 648-811 |
| Cow position: | chr5:30276760-30276917 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 648-811 |
| Cow position: | chr5:43402975-43403139 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 648-811 |
| Cow position: | chr5:59335840-59336003 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 75 |
| Conread position: | 648-813 |
| Cow position: | chr5:24996152-24995989 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 648-814 |
| Cow position: | chr5:29599476-29599319 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 648-814 |
| Cow position: | chr5:32338895-32338728 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 62, 147 |
| Conread position: | 652-807 |
| Cow position: | chr5:15770382-15770226 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 652-807 |
| Cow position: | chr5:55943642-55943492 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 66 |
| Conread position: | 653-811 |
| Cow position: | chr5:66582039-66582200 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 653-814 |
| Cow position: | chr5:54875619-54875461 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 63, 83 |
| Conread position: | 654-807 |
| Cow position: | chr5:64060522-64060672 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 655-807 |
| Cow position: | chr5:45854574-45854727 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 655-814 |
| Cow position: | chr5:56624440-56624281 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 656-814 |
| Cow position: | chr5:25495280-25495118 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 129 |
Show alignments to all cow chromosomes.